Recent advances in clustering methods for protein interaction networks

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Recent advances in clustering methods for protein interaction networks is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1050118088
P356DOI10.1186/1471-2164-11-S3-S10
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/1471-2164-11-s3-s10
P932PMC publication ID2999340
P698PubMed publication ID21143777

P2093author name stringYouping Deng
Jianxin Wang
Min Li
Yi Pan
P2860cites workIdentification of functional modules using network topology and high-throughput dataQ21202795
An automated method for finding molecular complexes in large protein interaction networksQ21284295
Markov clustering versus affinity propagation for the partitioning of protein interaction graphsQ21284364
Finding and evaluating community structure in networksQ21563748
Finding community structure in very large networksQ21686179
Community structure in social and biological networksQ24534298
Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasisQ24537769
Modularity and community structure in networksQ24548534
Network-based prediction of protein functionQ24670295
Protein complexes and functional modules in molecular networksQ24683305
The Stanford Microarray Database accommodates additional microarray platforms and data formatsQ24792881
The use of edge-betweenness clustering to investigate biological function in protein interaction networksQ24806078
AVID: an integrative framework for discovering functional relationships among proteinsQ24813007
A protein interaction map of Drosophila melanogasterQ28131783
An efficient algorithm for large-scale detection of protein familiesQ28131838
Learning the parts of objects by non-negative matrix factorizationQ28146173
Uncovering the overlapping community structure of complex networks in nature and societyQ28255377
Integration of biological networks and gene expression data using CytoscapeQ28681323
Lethality and centrality in protein networksQ29547267
Comparative assessment of large-scale data sets of protein-protein interactionsQ29547451
A map of the interactome network of the metazoan C. elegansQ29547482
From molecular to modular cell biologyQ29547493
Discovering regulatory and signalling circuits in molecular interaction networksQ29614951
Hierarchical structure and the prediction of missing links in networksQ30050098
Functional cartography of complex metabolic networksQ30481006
Inferring modules of functionally interacting proteins using the Bond Energy Algorithm.Q30482747
Relating whole-genome expression data with protein-protein interactionsQ30669147
Discovering molecular pathways from protein interaction and gene expression dataQ30811155
Iterative cluster analysis of protein interaction dataQ30960315
Integrated analysis of multiple data sources reveals modular structure of biological networksQ31040268
A "seed-refine" algorithm for detecting protein complexes from protein interaction dataQ31107476
Identifying protein complexes directly from high-throughput TAP data with Markov random fieldsQ31140525
Integration of genomic data for inferring protein complexes from global protein-protein interaction networksQ31146496
From pull-down data to protein interaction networks and complexes with biological relevanceQ31147891
Co-clustering of biological networks and gene expression dataQ32186692
Development and implementation of an algorithm for detection of protein complexes in large interaction networksQ33239865
Discovering protein complexes in dense reliable neighborhoods of protein interaction networks.Q51902568
Dynamical systems for discovering protein complexes and functional modules from biological networks.Q51915917
Identification of functional modules in a PPI network by clique percolation clustering.Q51928949
Interaction graph mining for protein complexes using local clique merging.Q51935655
Predicting interactions in protein networks by completing defective cliques.Q51952704
Community detection in complex networks using extremal optimization.Q51963216
Scale-free behavior in protein domain networks.Q52590402
Small-world network approach to identify key residues in protein-protein interactionQ81193331
Topology of small-world networks of protein-protein complex structuresQ81295140
CFinder: locating cliques and overlapping modules in biological networksQ82534265
Decomposition of overlapping protein complexes: a graph theoretical method for analyzing static and dynamic protein associationsQ33244521
Evaluation of clustering algorithms for protein-protein interaction networksQ33262820
Inferring topology from clustering coefficients in protein-protein interaction networksQ33265102
Semantic integration to identify overlapping functional modules in protein interaction networksQ33291610
Growing functional modules from a seed protein via integration of protein interaction and gene expression dataQ33303617
CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactionsQ33317074
Discovering functional interaction patterns in protein-protein interaction networksQ33343113
A structural approach for finding functional modules from large biological networksQ33369614
Modifying the DPClus algorithm for identifying protein complexes based on new topological structuresQ33371821
Core and periphery structures in protein interaction networksQ33441756
MIPS: analysis and annotation of proteins from whole genomesQ34933194
Topological structure analysis of the protein-protein interaction network in budding yeastQ34980439
Specificity in protein interactions and its relationship with sequence diversity and coevolutionQ35808870
Consistent dissection of the protein interaction network by combining global and local metricsQ36465578
Predicting protein functions from redundancies in large-scale protein interaction networksQ36689451
Graph theory and networks in Biology.Q36794657
Defining and identifying communities in networksQ36851731
Discovering functions and revealing mechanisms at molecular level from biological networksQ36912278
Computational methods for predicting protein-protein interactionsQ37059679
The interactome as a tree--an attempt to visualize the protein-protein interaction network in yeastQ37537608
Combining functional and topological properties to identify core modules in protein interaction networks.Q38405905
Modular organization of protein interaction networksQ38517471
Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeast.Q38518663
Identification of functional modules in protein complexes via hyperclique pattern discovery.Q38520778
Ensemble non-negative matrix factorization methods for clustering protein-protein interactions.Q41346487
A novel functional module detection algorithm for protein-protein interaction networksQ41904780
Identifying functional modules in protein-protein interaction networks: an integrated exact approachQ42646303
An algorithm for finding functional modules and protein complexes in protein-protein interaction networksQ43091919
A parallel edge-betweenness clustering tool for Protein-Protein Interaction networksQ44541389
Functional topology in a network of protein interactionsQ47207928
Detection of functional modules from protein interaction networks.Q47285412
Protein complex prediction via cost-based clusteringQ47387430
Prediction of protein-protein interaction networks.Q47637567
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.Q47830557
Protein complex prediction based on mutually exclusive interactions in protein interaction network.Q47853971
Functional and topological characterization of protein interaction networksQ47866212
Identifying functional modules using expression profiles and confidence-scored protein interactions.Q48291481
An ensemble framework for clustering protein-protein interaction networks.Q48392247
Detecting functional modules in the yeast protein-protein interaction network.Q48439461
Identifying dynamic network modules with temporal and spatial constraints.Q51827592
P4510describes a project that usesCytoscapeQ3699942
P407language of work or nameEnglishQ1860
P304page(s)S10
P577publication date2010-12-01
P1433published inBMC GenomicsQ15765854
P1476titleRecent advances in clustering methods for protein interaction networks
P478volume11 Suppl 3

Reverse relations

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