PPSampler2: predicting protein complexes more accurately and efficiently by sampling

scientific article

PPSampler2: predicting protein complexes more accurately and efficiently by sampling is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcsb/WiditaM13
P6179Dimensions Publication ID1002117375
P356DOI10.1186/1752-0509-7-S6-S14
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/1752-0509-7-s6-s14
P932PMC publication ID4029527
P698PubMed publication ID24565288
P5875ResearchGate publication ID260377554

P2093author name stringOsamu Maruyama
Chasanah Kusumastuti Widita
P2860cites workUp-to-date catalogues of yeast protein complexesQ42029545
NWE: Node-weighted expansion for protein complex prediction using random walk distancesQ42629148
Complex discovery from weighted PPI networks.Q45989256
Using indirect protein-protein interactions for protein complex prediction.Q51874626
WI-PHI: a weighted yeast interactome enriched for direct physical interactionsQ56890231
An automated method for finding molecular complexes in large protein interaction networksQ21284295
Markov clustering versus affinity propagation for the partitioning of protein interaction graphsQ21284364
Gene ontology: tool for the unification of biologyQ23781406
Proteome survey reveals modularity of the yeast cell machineryQ27929510
An efficient algorithm for large-scale detection of protein familiesQ28131838
GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genesQ29616254
Development and implementation of an algorithm for detection of protein complexes in large interaction networksQ33239865
A core-attachment based method to detect protein complexes in PPI networksQ33457746
RRW: repeated random walks on genome-scale protein networks for local cluster discoveryQ33501387
Computational approaches for detecting protein complexes from protein interaction networks: a surveyQ33531521
A Max-Flow-Based Approach to the Identification of Protein Complexes Using Protein Interaction and Microarray DataQ33670010
CORUM: the comprehensive resource of mammalian protein complexes--2009Q38377952
Sampling strategy for protein complex prediction using cluster size frequencyQ38493538
P407language of work or nameEnglishQ1860
P304page(s)S14
P577publication date2013-12-13
P1433published inBMC Systems BiologyQ4835949
P1476titlePPSampler2: predicting protein complexes more accurately and efficiently by sampling
P478volume7 Suppl 6

Reverse relations

cites work (P2860)
Q50095266CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations.
Q55353888Detecting complexes from edge-weighted PPI networks via genes expression analysis.
Q35011513Discovery of small protein complexes from PPI networks with size-specific supervised weighting
Q41477067From the static interactome to dynamic protein complexes: Three challenges
Q41483295Identifying protein complexes in PPI network using non-cooperative sequential game
Q36276423Protein complex prediction for large protein protein interaction networks with the Core&Peel method
Q51014077ReSAPP: predicting overlapping protein complexes by merging multiple-sampled partitions of proteins.
Q47110171RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks

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