PLOS Computational Biology (peer-reviewed open-access journal)

published in (P1433)

Q24811472	"Antedisciplinary" science
Q34679515	"Bioinformatics: introduction and methods," a bilingual Massive Open Online Course (MOOC) as a new example for global bioinformatics education
Q30386840	"Broadband" Bioinformatics Skills Transfer with the Knowledge Transfer Programme (KTP): Educational Model for Upliftment and Sustainable Development.
Q27333668	"Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution
Q34743729	"Gate-keeper" residues and active-site rearrangements in DNA polymerase μ help discriminate non-cognate nucleotides
Q33304213	"Getting started in...": a series not to miss
Q34220929	"Guilt by association" is the exception rather than the rule in gene networks
Q33422933	"I look in your eyes, honey": internal face features induce spatial frequency preference for human face processing
Q42776204	"Simple rules for editors"? Here is one rule to tackle neglected problems of publishing
Q33510924	'Glocal' robustness analysis and model discrimination for circadian oscillators
Q34916464	'HypothesisFinder:' a strategy for the detection of speculative statements in scientific text
Q113309529	(A)Symmetric Stem Cell Replication and Cancer
Q33279153	(A)symmetric stem cell replication and cancer
Q96121045	10 simple rules for teaching wet-lab experimentation to computational biology students, i.e., turning computer mice into lab rats
Q35539889	150 years of the mass action law.
Q64102758	16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses
Q21092526	2010 ISCB Overton Prize Awarded to Steven E. Brenner
Q21092511	2014 ISCB Accomplishment by a Senior Scientist Award: Gene Myers
Q21092509	2015 ISCB Overton Prize Awarded to Curtis Huttenhower
Q36070599	2016 ISCB Innovator Award: Serafim Batzoglou
Q40987699	2017 ISCB Accomplishment by a Senior Scientist Award given to Pavel Pevzner
Q33859820	2017 ISCB Innovator Award: Aviv Regev
Q40987710	2017 ISCB Overton Prize awarded to Christoph Bock
Q40987720	2017 Outstanding Contributions to ISCB Award: Fran Lewitter
Q94002744	2017 Reviewer and Editorial Board Thank You
Q55152474	2018 ISCB Innovator Award recognizes M. Madan Babu.
Q55315129	2018 ISCB Overton Prize awarded to Cole Trapnell.
Q55313411	2018 ISCB accomplishments by a senior scientist award.
Q55180876	2018 outstanding contributions to ISCB award: Russ Altman.
Q35225015	3-way networks: application of hypergraphs for modelling increased complexity in comparative genomics
Q113309569	3D Complex: a Structural Classification of Protein Complexes
Q33263952	3D complex: a structural classification of protein complexes
Q93122299	3D computational models explain muscle activation patterns and energetic functions of internal structures in fish swimming
Q91596456	3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries
Q59899911	3D morphology-based clustering and simulation of human pyramidal cell dendritic spines
Q34531182	3D reconstruction and standardization of the rat vibrissal cortex for precise registration of single neuron morphology
Q90135390	3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients
Q35944282	4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments
Q52664423	4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data.
Q35097085	A BMP-FGF morphogen toggle switch drives the ultrasensitive expression of multiple genes in the developing forebrain
Q113309483	A Balanced Memory Network
Q35743820	A Bayesian Attractor Model for Perceptual Decision Making
Q33869034	A Bayesian approach to analyse genetic variation within RNA viral populations.
Q112558514	A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series
Q42658335	A Bayesian approach to modelling heterogeneous calcium responses in cell populations.
Q33533323	A Bayesian approach to quantifying the effects of mass poultry vaccination upon the spatial and temporal dynamics of H5N1 in Northern Vietnam.
Q33654100	A Bayesian approach to the evolution of metabolic networks on a phylogeny
Q104468268	A Bayesian computational model reveals a failure to adapt interoceptive precision estimates across depression, anxiety, eating, and substance use disorders
Q35557608	A Bayesian ensemble approach for epidemiological projections
Q63487461	A Bayesian framework for the analysis of systems biology models of the brain.
Q33576696	A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies
Q30855143	A Bayesian framework to identify methylcytosines from high-throughput bisulfite sequencing data
Q30578000	A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data
Q46260997	A Bayesian method for detecting pairwise associations in compositional data
Q113308551	A Bayesian method for identifying associations between response variables and bacterial community composition
Q59807836	A Bayesian mixture modelling approach for spatial proteomics
Q112716329	A Bayesian model based computational analysis of the relationship between bisulfite accessible single-stranded DNA in chromatin and somatic hypermutation of immunoglobulin genes
Q64099397	A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation
Q35325857	A Bayesian model of category-specific emotional brain responses
Q100997441	A Bayesian non-parametric mixed-effects model of microbial growth curves
Q33525507	A Bayesian partition method for detecting pleiotropic and epistatic eQTL modules
Q98508196	A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis
Q27318544	A Bio-inspired Collision Avoidance Model Based on Spatial Information Derived from Motion Detectors Leads to Common Routes
Q28552981	A Biophysical Model of CRISPR/Cas9 Activity for Rational Design of Genome Editing and Gene Regulation
Q113309679	A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation
Q28553631	A Biophysical Systems Approach to Identifying the Pathways of Acute and Chronic Doxorubicin Mitochondrial Cardiotoxicity
Q27316829	A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo
Q33700672	A Boolean model of the gene regulatory network underlying Mammalian cortical area development
Q36282385	A Causal Inference Model Explains Perception of the McGurk Effect and Other Incongruent Audiovisual Speech
Q35804544	A Common Mechanism Underlying Food Choice and Social Decisions
Q113309625	A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules
Q36267296	A Comparative Analysis of Drug-Induced Hepatotoxicity in Clinically Relevant Situations
Q36248734	A Computational Approach for Identifying Synergistic Drug Combinations
Q27316965	A Computational Model for the AMPA Receptor Phosphorylation Master Switch Regulating Cerebellar Long-Term Depression
Q36134426	A Computational Model of Hepatic Energy Metabolism: Understanding Zonated Damage and Steatosis in NAFLD
Q35687184	A Computational Model of a Descending Mechanosensory Pathway Involved in Active Tactile Sensing
Q31081688	A Computational Model of the Rainbow Trout Hypothalamus-Pituitary-Ovary-Liver Axis
Q36074766	A Computational Modeling and Simulation Approach to Investigate Mechanisms of Subcellular cAMP Compartmentation.
Q35674681	A Computational, Tissue-Realistic Model of Pressure Ulcer Formation in Individuals with Spinal Cord Injury
Q27655680	A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family
Q28597169	A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis
Q28545926	A DIseAse MOdule Detection (DIAMOnD) algorithm derived from a systematic analysis of connectivity patterns of disease proteins in the human interactome
Q28552297	A Detailed Data-Driven Network Model of Prefrontal Cortex Reproduces Key Features of In Vivo Activity
Q28546514	A Developmental Switch for Hebbian Plasticity
Q35687027	A Diffusive Homeostatic Signal Maintains Neural Heterogeneity and Responsiveness in Cortical Networks
Q113309677	A Digital Atlas to Characterize the Mouse Brain Transcriptome
Q28551652	A Drug-Centric View of Drug Development: How Drugs Spread from Disease to Disease
Q35847227	A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic Events
Q35764855	A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle.
Q53592935	A FAIR guide for data providers to maximise sharing of human genomic data
Q35927246	A Feedback Model of Attention Explains the Diverse Effects of Attention on Neural Firing Rates and Receptive Field Structure
Q35858609	A Functional Cartography of Cognitive Systems
Q19370790	A Future Vision for PLOS Computational Biology
Q28547803	A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types
Q28816984	A General Shear-Dependent Model for Thrombus Formation
Q27317397	A Generative Statistical Algorithm for Automatic Detection of Complex Postures
Q35999287	A Geometrically-Constrained Mathematical Model of Mammary Gland Ductal Elongation Reveals Novel Cellular Dynamics within the Terminal End Bud.
Q61812002	A Gestalt inference model for auditory scene segregation
Q21563486	A Granger causality measure for point process models of ensemble neural spiking activity
Q28554789	A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics
Q27317166	A Jump-from-Cavity Pyrophosphate Ion Release Assisted by a Key Lysine Residue in T7 RNA Polymerase Transcription Elongation
Q113309255	A Keller-Segel model for C elegans L1 aggregation
Q35834574	A Kinetic Platform to Determine the Fate of Hydrogen Peroxide in Escherichia coli
Q57030866	A Kirchhoff-Nernst-Planck framework for modeling large scale extracellular electrodiffusion surrounding morphologically detailed neurons
Q35982371	A Knowledge-Based System for Display and Prediction of O-Glycosylation Network Behaviour in Response to Enzyme Knockouts
Q73017017	A Kuramoto model of self-other integration across interpersonal synchronization strategies
Q35872601	A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs
Q36251126	A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models
Q113309470	A Logical Model Provides Insights into T-cell Receptor Signaling
Q113309531	A Look inside HIV Resistance through Retroviral Protease Interaction Maps
Q36248746	A Looping-Based Model for Quenching Repression
Q27316326	A MAPK-Driven Feedback Loop Suppresses Rac Activity to Promote RhoA-Driven Cancer Cell Invasion
Q58749899	A Markov chain for numerical chromosomal instability in clonally expanding populations
Q113309494	A Mass Conserved Reaction-Diffusion System Captures Properties of Cell Polarity
Q28552038	A Mathematical Model of Neonatal Rat Atrial Monolayers with Constitutively Active Acetylcholine-Mediated K+ Current
Q36102605	A Mechanistic Model for Cooperative Behavior of Co-transcribing RNA Polymerases
Q30994004	A Method to Constrain Genome-Scale Models with 13C Labeling Data
Q35668576	A Minimal Regulatory Network of Extrinsic and Intrinsic Factors Recovers Observed Patterns of CD4+ T Cell Differentiation and Plasticity.
Q36010851	A Model for Direction Sensing in Dictyostelium discoideum: Ras Activity and Symmetry Breaking Driven by a Gβγ-Mediated, Gα2-Ric8 -- Dependent Signal Transduction Network
Q113309647	A Model for Integrating Elementary Neural Functions into Delayed-Response Behavior
Q28551837	A Model for an Angular Velocity-Tuned Motion Detector Accounting for Deviations in the Corridor-Centering Response of the Bee
Q35850923	A Model of Drosophila Larva Chemotaxis
Q28554062	A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development
Q36014804	A Molecular Clock Infers Heterogeneous Tissue Age Among Patients with Barrett's Esophagus
Q36134274	A Monte Carlo Study of Knots in Long Double-Stranded DNA Chains
Q27315917	A Motor-Gradient and Clustering Model of the Centripetal Motility of MTOCs in Meiosis I of Mouse Oocytes
Q35940178	A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers
Q28553224	A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism
Q35637029	A Multiscale Model Evaluates Screening for Neoplasia in Barrett's Esophagus
Q38774786	A Network Biology Approach Identifies Molecular Cross-Talk between Normal Prostate Epithelial and Prostate Carcinoma Cells
Q36244429	A Network Model of Local Field Potential Activity in Essential Tremor and the Impact of Deep Brain Stimulation
Q35890025	A Network Model to Describe the Terminal Differentiation of B Cells
Q27318669	A Neutrophil Phenotype Model for Extracorporeal Treatment of Sepsis
Q30361869	A New Approach to Model Pitch Perception Using Sparse Coding
Q35964679	A New Fiji-Based Algorithm That Systematically Quantifies Nine Synaptic Parameters Provides Insights into Drosophila NMJ Morphometry
Q113309488	A New Principle for Information Storage in an Enzymatic Pathway Model
Q28597655	A New Take on John Maynard Smith's Concept of Protein Space for Understanding Molecular Evolution
Q28554371	A Novel Drug-Mouse Phenotypic Similarity Method Detects Molecular Determinants of Drug Effects
Q113309467	A Numerical Approach to Ion Channel Modelling Using Whole-Cell Voltage-Clamp Recordings and a Genetic Algorithm
Q28550391	A Pan-Cancer Catalogue of Cancer Driver Protein Interaction Interfaces
Q58090909	A Pareto approach to resolve the conflict between information gain and experimental costs: Multiple-criteria design of carbon labeling experiments
Q36165228	A Parsimonious Model of the Rabbit Action Potential Elucidates the Minimal Physiological Requirements for Alternans and Spiral Wave Breakup
Q35074295	A Petri net model of granulomatous inflammation: implications for IL-10 mediated control of Leishmania donovani infection
Q113309552	A Phylogenomic Study of Human, Dog and Mouse
Q35989656	A Predictive Model for Yeast Cell Polarization in Pheromone Gradients
Q36257591	A Quantitative Model of the GIRK1/2 Channel Reveals That Its Basal and Evoked Activities Are Controlled by Unequal Stoichiometry of Gα and Gβγ.
Q113309411	A Quantitative Study of the Division Cycle of Caulobacter crescentus Stalked Cells
Q22341585	A Quick Introduction to Version Control with Git and GitHub
Q30883304	A RESTful API for accessing microbial community data for MG-RAST.
Q18002781	A Report of the Curriculum Task Force of the ISCB Education Committee
Q46305368	A Rescorla-Wagner drift-diffusion model of conditioning and timing.
Q43213510	A Review of 2008 for PLoS Computational Biology
Q55383709	A Review of 2009 for PLoS Computational Biology.
Q33813485	A Review of 2010 for PLoS Computational Biology
Q28732419	A Review of 2011 for PLoS Computational Biology
Q28553701	A Robust Actin Filaments Image Analysis Framework
Q40036873	A Robust Feedforward Model of the Olfactory System.
Q30663633	A Self-Organising Model of Thermoregulatory Huddling
Q35960370	A Sensorimotor Model for Computing Intended Reach Trajectories
Q27316809	A Sensory-Driven Trade-Off between Coordinated Motion in Social Prey and a Predator's Visual Confusion
Q35976290	A Simple and Accurate Model to Predict Responses to Multi-electrode Stimulation in the Retina.
Q36022760	A Single Mechanism Can Account for Human Perception of Depth in Mixed Correlation Random Dot Stereograms
Q35742414	A Spatially Detailed Model of Isometric Contraction Based on Competitive Binding of Troponin I Explains Cooperative Interactions between Tropomyosin and Crossbridges
Q36189772	A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging
Q21145342	A Stevedore's protein knot
Q36217558	A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability
Q35748905	A Stochastic Multiscale Model That Explains the Segregation of Axonal Microtubules and Neurofilaments in Neurological Diseases
Q113309451	A Stochastic View of Spliceosome Assembly and Recycling in the Nucleus
Q113309496	A Survey Of Genomic Properties For The Detection Of Regulatory Polymorphisms
Q30000005	A Systematic Bayesian Integration of Epidemiological and Genetic Data
Q30373773	A Thalamocortical Neural Mass Model of the EEG during NREM Sleep and Its Response to Auditory Stimulation.
Q33362918	A Theoretical Model of Jigsaw-Puzzle Pattern Formation by Plant Leaf Epidermal Cells
Q27318118	A Theory of Cheap Control in Embodied Systems
Q28552926	A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiae
Q57338756	A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions
Q35751220	A Three-Threshold Learning Rule Approaches the Maximal Capacity of Recurrent Neural Networks
Q36246181	A Topological Criterion for Filtering Information in Complex Brain Networks.
Q36251131	A Two-Locus Model of the Evolution of Insecticide Resistance to Inform and Optimise Public Health Insecticide Deployment Strategies
Q35831796	A Unifying Probabilistic View of Associative Learning
Q30836580	A Validated Multiscale In-Silico Model for Mechano-sensitive Tumour Angiogenesis and Growth
Q28550522	A Virtual Mixture Approach to the Study of Multistate Equilibrium: Application to Constant pH Simulation in Explicit Water
Q41956133	A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent "Heterosynaptic" LTD in the Dentate Gyrus In Vivo
Q35976389	A Well-Defined Readily Releasable Pool with Fixed Capacity for Storing Vesicles at Calyx of Held.
Q100310663	A bacterial size law revealed by a coarse-grained model of cell physiology
Q34743711	A balance equation determines a switch in neuronal excitability
Q33298401	A balanced memory network
Q113238615	A benchmark dataset for canopy crown detection and delineation in co-registered airborne RGB, LiDAR and hyperspectral imagery from the National Ecological Observation Network
Q58587959	A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs)
Q92982341	A benchmark of computational CRISPR-Cas9 guide design methods
Q64099412	A benchmark-driven approach to reconstruct metabolic networks for studying cancer metabolism
Q113308685	A bio-mimetic miniature drone for real-time audio based short-range tracking
Q28270697	A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank
Q35562666	A biologically constrained, mathematical model of cortical wave propagation preceding seizure termination.
Q35585459	A biologically plausible computational theory for value integration and action selection in decisions with competing alternatives
Q55429633	A biophysical mechanism for preferred direction enhancement in fly motion vision.
Q50422180	A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks.
Q89876140	A biophysical model of striatal microcircuits suggests gamma and beta oscillations interleaved at delta/theta frequencies mediate periodicity in motor control
Q24812608	A biophysical model of the mitochondrial respiratory system and oxidative phosphorylation
Q90315097	A biophysically detailed computational model of urinary bladder small DRG neuron soma
Q33432720	A bipolar clamp mechanism for activation of Jak-family protein tyrosine kinases
Q21563479	A brain-machine interface for control of medically-induced coma
Q28482152	A canonical model of multistability and scale-invariance in biological systems
Q92121577	A case study in the functional consequences of scaling the sizes of realistic cortical models
Q28481186	A cell-based computational modeling approach for developing site-directed molecular probes
Q27334858	A cell-based model for quorum sensing in heterogeneous bacterial colonies
Q91603745	A cell-based probabilistic approach unveils the concerted action of miRNAs
Q30479833	A cervid vocal fold model suggests greater glottal efficiency in calling at high frequencies
Q35533082	A change in vaccine efficacy and duration of protection explains recent rises in pertussis incidence in the United States.
Q28484779	A characterization of scale invariant responses in enzymatic networks
Q64992263	A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data.
Q34649488	A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana
Q97893845	A circuit model of auditory cortex
Q33330861	A coarse-grained biophysical model of E. coli and its application to perturbation of the rRNA operon copy number
Q35156745	A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations
Q35105592	A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes.
Q33500124	A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence
Q28476831	A combined experimental and mathematical approach for molecular-based optimization of irinotecan circadian delivery
Q33396205	A common cortical circuit mechanism for perceptual categorical discrimination and veridical judgment
Q27331774	A common model for cytokine receptor activation: combined scissor-like rotation and self-rotation of receptor dimer induced by class I cytokine
Q33247448	A community resource benchmarking predictions of peptide binding to MHC-I molecules
Q30488480	A compact representation of drawing movements with sequences of parabolic primitives
Q28741827	A compact statistical model of the song syntax in Bengalese finch
Q33335163	A comparative computer simulation of dendritic morphology
Q27320607	A comparative study and a phylogenetic exploration of the compositional architectures of mammalian nuclear genomes
Q27015636	A comparison of computational models for eukaryotic cell shape and motility
Q33892604	A comparison of mathematical models for polarization of single eukaryotic cells in response to guided cues
Q99546593	A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology
Q99613389	A compiler for biological networks on silicon chips
Q64109162	A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory
Q35034136	A complex-valued firing-rate model that approximates the dynamics of spiking networks
Q62648887	A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications
Q42515905	A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.
Q49980750	A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.
Q33628849	A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature
Q60309393	A comprehensive ensemble model for comparing the allosteric effect of ordered and disordered proteins
Q27334159	A comprehensive model of the spatio-temporal stem cell and tissue organisation in the intestinal crypt
Q36395800	A comprehensive overview and evaluation of circular RNA detection tools
Q28534683	A comprehensive survey of small-molecule binding pockets in proteins
Q33649778	A comprehensive, quantitative, and genome-wide model of translation
Q90628767	A computational account of threat-related attentional bias
Q33506604	A computational analysis of ATP binding of SV40 large tumor antigen helicase motor
Q58608477	A computational analysis of dynamic, multi-organ inflammatory crosstalk induced by endotoxin in mice
Q36314931	A computational analysis of in vivo VEGFR activation by multiple co-expressed ligands.
Q33809369	A computational and experimental study of the regulatory mechanisms of the complement system
Q28476189	A computational approach to analyze the mechanism of action of the kinase inhibitor bafetinib
Q50133302	A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal.
Q28476770	A computational approach to finding novel targets for existing drugs
Q35547227	A computational approach to identifying gene-microRNA modules in cancer
Q33301002	A computational approach to the functional screening of genomes
Q113309464	A computational approach to the functional screening of genomes
Q27334063	A computational clonal analysis of the developing mouse limb bud
Q27320492	A computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolution
Q89857165	A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks
Q28538580	A computational framework for analyzing stochasticity in gene expression
Q48114238	A computational framework for cortical microtubule dynamics in realistically shaped plant cells.
Q33719490	A computational framework for influenza antigenic cartography
Q92251682	A computational framework for the morpho-elastic development of molluskan shells by surface and volume growth
Q64108557	A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations
Q34288757	A computational investigation on the connection between dynamics properties of ribosomal proteins and ribosome assembly
Q60914005	A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types
Q113309253	A computational method for identifying an optimal combination of existing drugs to repair the action potentials of SQT1 ventricular myocytes
Q92772620	A computational model for gonadotropin releasing cells in the teleost fish medaka
Q55235240	A computational model for how cells choose temporal or spatial sensing during chemotaxis.
Q28538300	A computational model for the analysis of lipoprotein distributions in the mouse: translating FPLC profiles to lipoprotein metabolism
Q126510018	A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization
Q64106567	A computational model of epithelial solute and water transport along a human nephron
Q98471484	A computational model of induced pluripotent stem-cell derived cardiomyocytes for high throughput risk stratification of KCNQ1 genetic variants
Q28534910	A computational model of liver iron metabolism
Q90458492	A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data
Q52583059	A computational model of shared fine-scale structure in the human connectome.
Q38634940	A computational model of spatio-temporal cardiac intracellular calcium handling with realistic structure and spatial flux distribution from sarcoplasmic reticulum and t-tubule reconstructions
Q113238609	A computational model of stereoscopic prey capture in praying mantises
Q33747592	A computational model of the fetal circulation to quantify blood redistribution in intrauterine growth restriction
Q27324767	A computational model predicting disruption of blood vessel development
Q61451281	A computational model to understand mouse iron physiology and disease
Q95322039	A computational model tracks whole-lung Mycobacterium tuberculosis infection and predicts factors that inhibit dissemination
Q33290223	A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes
Q52691301	A computational study of astrocytic glutamate influence on post-synaptic neuronal excitability.
Q91603768	A computational study on the role of glutamate and NMDA receptors on cortical spreading depression using a multidomain electrodiffusion model
Q113308793	A computationally tractable birth-death model that combines phylogenetic and epidemiological data
Q41677056	A conceptual and computational framework for modelling and understanding the non-equilibrium gene regulatory networks of mouse embryonic stem cells.
Q27335526	A condensation-ordering mechanism in nanoparticle-catalyzed peptide aggregation
Q113309017	A confirmation bias in perceptual decision-making due to hierarchical approximate inference
Q112286720	A conserved expression signature predicts growth rate and reveals cell & lineage-specific differences
Q30496697	A continuum model for metabolic gas exchange in pear fruit
Q42703103	A continuum-mechanical skeletal muscle model including actin-titin interaction predicts stable contractions on the descending limb of the force-length relation.
Q113308929	A copula based topology preserving graph convolution network for clustering of single-cell RNA-seq data
Q47110228	A coupled-oscillator model of olfactory bulb gamma oscillations
Q33728635	A covering method for detecting genetic associations between rare variants and common phenotypes
Q36328057	A critical analysis of computational protein design with sparse residue interaction graphs
Q40265537	A critical quantity for noise attenuation in feedback systems
Q96590061	A crowdsourced set of curated structural variants for the human genome
Q40131995	A curated genome-scale metabolic model of Bordetella pertussis metabolism.
Q33263252	A curvature-mediated mechanism for localization of lipids to bacterial poles
Q113309573	A curvature-mediated mechanism for localization of lipids to bacterial poles
Q47138889	A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design.
Q113308982	A data-driven approach for constructing mutation categories for mutational signature analysis
Q101044731	A data-driven characterisation of natural facial expressions when giving good and bad news
Q64256232	A data-driven interactome of synergistic genes improves network-based cancer outcome prediction
Q28535329	A data-driven mathematical model of CA-MRSA transmission among age groups: evaluating the effect of control interventions
Q38667968	A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation
Q113308844	A data-informed mean-field approach to mapping of cortical parameter landscapes
Q47110309	A deep convolutional neural network for classification of red blood cells in sickle cell anemia.
Q111150155	A deep generative model of 3D single-cell organization
Q112611462	A deep learning algorithm for 3D cell detection in whole mouse brain image datasets
Q64113931	A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows
Q34383473	A dendritic mechanism for decoding traveling waves: principles and applications to motor cortex
Q27332265	A density-dependent switch drives stochastic clustering and polarization of signaling molecules
Q28534350	A design principle of group-level decision making in cell populations
Q27333080	A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes
Q35224566	A deterministic model predicts the properties of stochastic calcium oscillations in airway smooth muscle cells
Q33438450	A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation.
Q33576721	A differentiation-based phylogeny of cancer subtypes
Q24814475	A digital atlas to characterize the mouse brain transcriptome
Q27321764	A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis
Q48253036	A direct interaction of cholesterol with the dopamine transporter prevents its out-to-inward transition
Q35133575	A discrete model of Drosophila eggshell patterning reveals cell-autonomous and juxtacrine effects
Q34649426	A discriminative approach for unsupervised clustering of DNA sequence motifs
Q35075087	A disorder-induced domino-like destabilization mechanism governs the folding and functional dynamics of the repeat protein IκBα
Q99411742	A disordered encounter complex is central to the yeast Abp1p SH3 domain binding pathway
Q61810616	A diurnal flux balance model of Synechocystis sp. PCC 6803 metabolism
Q27323154	A division in PIN-mediated auxin patterning during organ initiation in grasses
Q28473618	A dual receptor crosstalk model of G-protein-coupled signal transduction
Q89387204	A dual regulation mechanism of histidine kinase CheA identified by combining network-dynamics modeling and system-level input-output data
Q102330758	A dual-feedback loop model of the mammalian circadian clock for multi-input control of circadian phase
Q33365257	A dynamic genetic-hormonal regulatory network model explains multiple cellular behaviors of the root apical meristem of Arabidopsis thaliana
Q28472847	A dynamic model of interactions of Ca2+, calmodulin, and catalytic subunits of Ca2+/calmodulin-dependent protein kinase II
Q21145365	A dynamic network approach for the study of human phenotypes
Q64900411	A dynamic network model of temporal receptive fields in primary auditory cortex.
Q33691405	A dynamic neural field model of mesoscopic cortical activity captured with voltage-sensitive dye imaging
Q64117679	A dynamic power-law sexual network model of gonorrhoea outbreaks
Q30010177	A dynamic view of domain-motif interactions
Q34124915	A dynamical model of oocyte maturation unveils precisely orchestrated meiotic decisions
Q33961361	A dynamical model reveals gene co-localizations in nucleus
Q28647868	A dynamical phyllotaxis model to determine floral organ number
Q34629080	A dynamical role for acetylcholine in synaptic renormalization
Q47862370	A dynamical systems approach for estimating phase interactions between rhythms of different frequencies from experimental data.
Q30837931	A dynamical systems hypothesis of schizophrenia
Q28477181	A dynamical systems model for combinatorial cancer therapy enhances oncolytic adenovirus efficacy by MEK-inhibition
Q33404054	A factor graph nested effects model to identify networks from genetic perturbations
Q30656546	A family of algorithms for computing consensus about node state from network data
Q33363117	A feature-based approach to modeling protein-DNA interactions
Q34145635	A feedback quenched oscillator produces turing patterning with one diffuser
Q34064161	A first attempt to bring computational biology into advanced high school biology classrooms
Q33285032	A first look at ARFome: dual-coding genes in mammalian genomes
Q113309485	A first-principles model of early evolution: Emergence of gene families, species and preferred protein folds
Q33290829	A first-principles model of early evolution: emergence of gene families, species, and preferred protein folds
Q90123389	A flexible and generalizable model of online latent-state learning
Q27324454	A forced damped oscillation framework for undulatory swimming provides new insights into how propulsion arises in active and passive swimming
Q96223645	A framework for integrating directed and undirected annotations to build explanatory models of cis-eQTL data
Q97677986	A framework to assess the quality and impact of bioinformatics training across ELIXIR
Q47137896	A free-boundary model of a motile cell explains turning behavior.
Q58762156	A fully autonomous terrestrial bat-like acoustic robot
Q96121014	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma
Q96223775	A functional spiking-neuron model of activity-silent working memory in humans based on calcium-mediated short-term synaptic plasticity
Q104468375	A functional theory of bistable perception based on dynamical circular inference
Q113309330	A gap-filling algorithm for prediction of metabolic interactions in microbial communities
Q21563499	A general definition and nomenclature for alternative splicing events
Q113308591	A general framework for predicting the transcriptomic consequences of non-coding variation and small molecules
Q28546338	A general framework for thermodynamically consistent parameterization and efficient sampling of enzymatic reactions
Q36314724	A general model for metabolic scaling in self-similar asymmetric networks
Q34979331	A general model for toxin-antitoxin module dynamics can explain persister cell formation in E. coli
Q113308553	A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks
Q33327690	A generalized allosteric mechanism for cis-regulated cyclic nucleotide binding domains.
Q33491537	A generalized framework for quantifying the dynamics of EEG event-related desynchronization
Q89695529	A generative growth model for thalamocortical axonal branching in primary visual cortex
Q92523968	A generative learning model for saccade adaptation
Q104129949	A generative spiking neural-network model of goal-directed behaviour and one-step planning
Q33314596	A generic mechanism for adaptive growth rate regulation
Q33384411	A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates
Q30678474	A genome-scale integration and analysis of Lactococcus lactis translation data
Q112282823	A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications
Q28474709	A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189
Q33372098	A genomewide functional network for the laboratory mouse
Q100406831	A genotype imputation method for de-identified haplotype reference information by using recurrent neural network
Q64120556	A global map of the protein shape universe
Q60952326	A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies
Q41333816	A graphical modelling approach to the dissection of highly correlated transcription factor binding site profiles
Q99719913	A greedy classifier optimization strategy to assess ion channel blocking activity and pro-arrhythmia in hiPSC-cardiomyocytes
Q34550721	A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
Q21090166	A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
Q113309669	A guild of forty-five CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
Q34671716	A healthy fear of the unknown: perspectives on the interpretation of parameter fits from computational models in neuroscience
Q28541682	A hepatitis C virus infection model with time-varying drug effectiveness: solution and analysis
Q28471804	A hidden Markov model for single particle tracks quantifies dynamic interactions between LFA-1 and the actin cytoskeleton
Q113309212	A hidden Markov model reliably characterizes ketamine-induced spectral dynamics in macaque local field potentials and human electroencephalograms
Q28472278	A hidden feedback in signaling cascades is revealed
Q38655276	A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium.
Q27332205	A hierarchical neuronal model for generation and online recognition of birdsongs
Q64272245	A hierarchical sparse coding model predicts acoustic feature encoding in both auditory midbrain and cortex
Q47127373	A hierarchical stochastic model for bistable perception
Q30492724	A hierarchy of time-scales and the brain
Q27335114	A high-throughput screening approach to discovering good forms of biologically inspired visual representation
Q30678483	A horizontal alignment tool for numerical trend discovery in sequence data: application to protein hydropathy
Q36304142	A human judgment approach to epidemiological forecasting
Q28543697	A human platelet calcium calculator trained by pairwise agonist scanning
Q33550753	A human-specific de novo protein-coding gene associated with human brain functions
Q28477128	A hybrid model of mammalian cell cycle regulation
Q113308848	A hybrid stochastic-deterministic approach to explore multiple infection and evolution in HIV
Q113309176	A hydro-osmotic coarsening theory of biological cavity formation
Q104468159	A joint modeling approach for longitudinal microbiome data improves ability to detect microbiome associations with disease
Q57805328	A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria
Q96964217	A kinetic mechanism for enhanced selectivity of membrane transport
Q64095072	A kinetic model for Brain-Derived Neurotrophic Factor mediated spike timing-dependent LTP
Q28472858	A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity
Q115665021	A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli
Q21092563	A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations
Q28487462	A kinetic platform to determine the fate of nitric oxide in Escherichia coli
Q33860424	A knowledge-based T2-statistic to perform pathway analysis for quantitative proteomic data.
Q113309234	A large-scale brain network mechanism for increased seizure propensity in Alzheimer’s disease
Q35075083	A latent Markov modelling approach to the evaluation of circulating cathodic antigen strips for schistosomiasis diagnosis pre- and post-praziquantel treatment in Uganda
Q33375018	A learning theory for reward-modulated spike-timing-dependent plasticity with application to biofeedback
Q112740385	A lexical approach for identifying behavioural action sequences
Q60933612	A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome
Q30835005	A likelihood-based approach to identifying contaminated food products using sales data: performance and challenges
Q92956374	A lipophilicity-based energy function for membrane-protein modelling and design
Q64261379	A local measure of symmetry and orientation for individual spikes of grid cells
Q59400009	A local uPAR-plasmin-TGFβ1 positive feedback loop in a qualitative computational model of angiogenic sprouting explains the in vitro effect of fibrinogen variants
Q33295215	A logical model provides insights into T cell receptor signaling
Q28469157	A look inside HIV resistance through retroviral protease interaction maps
Q55470845	A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data.
Q33384420	A low dimensional description of globally coupled heterogeneous neural networks of excitatory and inhibitory neurons
Q63976788	A low-threshold potassium current enhances sparseness and reliability in a model of avian auditory cortex
Q33302934	A macaque's-eye view of human insertions and deletions: differences in mechanisms
Q113309463	A macaque's-eye view of human insertions and deletions: differences in mechanisms
Q98238247	A machine learning and network framework to discover new indications for small molecules
Q45944935	A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action.
Q52570104	A machine learning based framework to identify and classify long terminal repeat retrotransposons.
Q113308919	A machine learning pipeline for classification of cetacean echolocation clicks in large underwater acoustic datasets
Q36293837	A magnesium-induced triplex pre-organizes the SAM-II riboswitch.
Q28475993	A mapping of drug space from the viewpoint of small molecule metabolism
Q61458754	A marginalized two-part Beta regression model for microbiome compositional data
Q30832012	A mass conserved reaction-diffusion system captures properties of cell polarity
Q47249915	A master equation approach to actin polymerization applied to endocytosis in yeast
Q28477927	A mathematical framework for estimating pathogen transmission fitness and inoculum size using data from a competitive mixtures animal model
Q30399469	A mathematical framework for protein structure comparison
Q33396199	A mathematical framework for the selection of an optimal set of peptides for epitope-based vaccines
Q34126248	A mathematical methodology for determining the temporal order of pathway alterations arising during gliomagenesis
Q36362960	A mathematical model coupling polarity signaling to cell adhesion explains diverse cell migration patterns
Q91861040	A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract
Q47557037	A mathematical model for IL-6-mediated, stem cell driven tumor growth and targeted treatment
Q27339437	A mathematical model for neutrophil gradient sensing and polarization
Q113309534	A mathematical model for neutrophil gradient sensing and polarization
Q97550205	A mathematical model for persistent post-CSD vasoconstriction
Q33987374	A mathematical model for the reciprocal differentiation of T helper 17 cells and induced regulatory T cells
Q34468902	A mathematical model of CR3/TLR2 crosstalk in the context of Francisella tularensis infection
Q36281070	A mathematical model of calcium dynamics in HSY cells
Q92772539	A mathematical model of calcium dynamics: Obesity and mitochondria-associated ER membranes
Q100939921	A mathematical model of flagellar gene regulation and construction in Salmonella enterica
Q104468254	A mathematical model of local and global attention in natural scene viewing
Q27332523	A mathematical model of muscle containing heterogeneous half-sarcomeres exhibits residual force enhancement
Q100420465	A mathematical model of the metastatic bottleneck predicts patient outcome and response to cancer treatment
Q113746493	A mathematical model of the role of aggregation in sonic hedgehog signalling
Q34299345	A maximum entropy test for evaluating higher-order correlations in spike counts
Q48105797	A maximum-entropy model for predicting chromatin contacts
Q28533421	A mechanical design principle for tissue structure and function in the airway tree
Q58801214	A mechanism for bistability in glycosylation
Q89629160	A mechanism for epithelial-mesenchymal heterogeneity in a population of cancer cells
Q113308505	A mechanism for punctuating equilibria during mammalian vocal development
Q113309267	A mechanistic and data-driven reconstruction of the time-varying reproduction number: Application to the COVID-19 epidemic
Q104475227	A mechanistic framework for a priori pharmacokinetic predictions of orally inhaled drugs
Q91323051	A mechanistic integrative computational model of macrophage polarization: Implications in human pathophysiology
Q104499332	A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits
Q113308757	A mechanistic modeling framework reveals the key principles underlying tumor metabolism
Q52631151	A mechanistic pan-cancer pathway model informed by multi-omics data interprets stochastic cell fate responses to drugs and mitogens.
Q44106023	A mechanistic spatio-temporal framework for modelling individual-to-individual transmission-With an application to the 2014-2015 West Africa Ebola outbreak.
Q34733504	A mechanistic understanding of allosteric immune escape pathways in the HIV-1 envelope glycoprotein
Q33701607	A mechanistic view of the role of E3 in sumoylation
Q96291865	A mechanistic, stigmergy model of territory formation in solitary animals: Territorial behavior can dampen disease prevalence but increase persistence
Q42706654	A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect
Q113308548	A method for the inference of cytokine interaction networks
Q40077782	A method of determining where to target surveillance efforts in heterogeneous epidemiological systems.
Q45387331	A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling
Q28756598	A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes
Q113309085	A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC
Q35220854	A micellar on-pathway intermediate step explains the kinetics of prion amyloid formation
Q33775523	A minimal model of metabolism-based chemotaxis
Q64865041	A minimally invasive neurostimulation method for controlling abnormal synchronisation in the neuronal activity
Q34916544	A mixture of delta-rules approximation to bayesian inference in change-point problems
Q41324191	A mixture of sparse coding models explaining properties of face neurons related to holistic and parts-based processing.
Q30972930	A model analysis of arterial oxygen desaturation during apnea in preterm infants
Q113309284	A model explaining mRNA level fluctuations based on activity demands and RNA age
Q27334736	A model for a correlated random walk based on the ordered extension of pseudopodia
Q36302193	A model for brain life history evolution
Q47562680	A model for cooperative gating of L-type Ca2+ channels and its effects on cardiac alternans dynamics.
Q33582219	A model for genetic and epigenetic regulatory networks identifies rare pathways for transcription factor induced pluripotency
Q57235400	A model for hydrophobic protrusions on peripheral membrane proteins
Q27339914	A model for integrating elementary neural functions into delayed-response behavior
Q35315347	A model for sigma factor competition in bacterial cells
Q31151086	A model for the epigenetic switch linking inflammation to cell transformation: deterministic and stochastic approaches
Q113308404	A model for the intrinsic limit of cancer therapy: Duality of treatment-induced cell death and treatment-induced stemness
Q92251672	A model for the origin and development of visual orientation selectivity
Q34042591	A model for the origin and properties of flicker-induced geometric phosphenes
Q34845032	A model for the self-organization of vesicular flux and protein distributions in the Golgi apparatus
Q89629182	A model for time interval learning in the Purkinje cell
Q34126242	A model of ant route navigation driven by scene familiarity
Q34649513	A model of binocular rivalry and cross-orientation suppression
Q33383209	A model of brain circulation and metabolism: NIRS signal changes during physiological challenges
Q28391443	A model of cardiovascular disease giving a plausible mechanism for the effect of fractionated low-dose ionizing radiation exposure
Q113309096	A model of head direction and landmark coding in complex environments
Q91279823	A model of how depth facilitates scene-relative object motion perception
Q41383861	A model of human motor sequence learning explains facilitation and interference effects based on spike-timing dependent plasticity
Q113309338	A model of naturalistic decision making in preference tests
Q113309225	A model of resource partitioning between foraging bees based on learning
Q34440620	A model of reward- and effort-based optimal decision making and motor control
Q49980838	A model of risk and mental state shifts during social interaction.
Q27336362	A model of stimulus-specific neural assemblies in the insect antennal lobe
Q47137519	A model of the onset of the senescence associated secretory phenotype after DNA damage induced senescence
Q90696398	A model of tuberculosis clustering in low incidence countries reveals more transmission in the United Kingdom than the Netherlands between 2010 and 2015
Q34325470	A model-based Bayesian estimation of the rate of evolution of VNTR loci in Mycobacterium tuberculosis
Q47134436	A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation
Q100561541	A model-based evaluation of the efficacy of COVID-19 social distancing, testing and hospital triage policies
Q47105027	A modeling study of budding yeast colony formation and its relationship to budding pattern and aging
Q55039009	A modelling approach for exploring muscle dynamics during cyclic contractions.
Q113309340	A modular approach for modeling the cell cycle based on functional response curves
Q104514816	A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness
Q91899052	A molecular odorant transduction model and the complexity of spatio-temporal encoding in the Drosophila antenna
Q36390726	A motor unit-based model of muscle fatigue
Q113309268	A multi-approach and multi-scale platform to model CD4+ T cells responding to infections
Q27332728	A multi-cell, multi-scale model of vertebrate segmentation and somite formation
Q34042598	A multi-compartment model for interneurons in the dorsal lateral geniculate nucleus
Q30491857	A multi-component model of the developing retinocollicular pathway incorporating axonal and synaptic growth
Q114054794	A multi-label learning model for predicting drug-induced pathology in multi-organ based on toxicogenomics data
Q112289702	A multi-objective genetic algorithm to find active modules in multiplex biological networks
Q34649496	A multi-scale analysis of influenza A virus fitness trade-offs due to temperature-dependent virus persistence
Q90847647	A multi-scale coevolutionary approach to predict interactions between protein domains
Q58601368	A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas
Q92803611	A multi-scale model of gas transport in the lung to study heterogeneous lung ventilation during the multiple-breath washout test
Q35082168	A multi-scale model of hepcidin promoter regulation reveals factors controlling systemic iron homeostasis
Q92205394	A multi-state model of the CaMKII dodecamer suggests a role for calmodulin in maintenance of autophosphorylation
Q28473678	A multi-variant, viral dynamic model of genotype 1 HCV to assess the in vivo evolution of protease-inhibitor resistant variants
Q28472464	A multidimensional strategy to detect polypharmacological targets in the absence of structural and sequence homology
Q28478191	A multiscale approach to characterize the early aggregation steps of the amyloid-forming peptide GNNQQNY from the yeast prion sup-35
Q28540804	A multiscale approach to modelling drug metabolism by membrane-bound cytochrome P450 enzymes
Q104791312	A multiscale model of complex endothelial cell dynamics in early angiogenesis
Q64080138	A multiscale model of epigenetic heterogeneity-driven cell fate decision-making
Q28473188	A multiscale model to investigate circadian rhythmicity of pacemaker neurons in the suprachiasmatic nucleus
Q49980852	A multiscale modelling approach to assess the impact of metabolic zonation and microperfusion on the hepatic carbohydrate metabolism.
Q52598818	A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.
Q112268428	A musculoskeletal finite element model of rat knee joint for evaluating cartilage biomechanics during gait
Q113309117	A musculoskeletal finite element model of rat knee joint for evaluating cartilage biomechanics during gait
Q35018024	A network approach to analyzing highly recombinant malaria parasite genes
Q28539763	A network characteristic that correlates environmental and genetic robustness
Q35489216	A network convergence zone in the hippocampus
Q47109388	A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer.
Q28536026	A network inference method for large-scale unsupervised identification of novel drug-drug interactions
Q34390468	A network-based approach for predicting missing pathway interactions
Q113309119	A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism
Q110083884	A network-informed analysis of SARS-CoV-2 and hemophagocytic lymphohistiocytosis genes’ interactions points to Neutrophil extracellular traps as mediators of thrombosis in COVID-19
Q28475726	A neural computational model of incentive salience
Q92584636	A neural field model for color perception unifying assimilation and contrast
Q28652414	A neural mechanism for background information-gated learning based on axonal-dendritic overlaps
Q47883665	A neural network model for the orbitofrontal cortex and task space acquisition during reinforcement learning.
Q92983661	A neural network model predicts community-level signaling states in a diverse microbial community
Q34504830	A neural population model incorporating dopaminergic neurotransmission during complex voluntary behaviors
Q30474428	A neurocomputational model of stimulus-specific adaptation to oddball and Markov sequences
Q42918151	A neurocomputational model of the mismatch negativity
Q34058040	A neurodynamic account of spontaneous behaviour
Q64060552	A neuromechanistic model for rhythmic beat generation
Q30976905	A neurophysiologically plausible population code model for feature integration explains visual crowding
Q99561480	A new Graph Gaussian embedding method for analyzing the effects of cognitive training
Q35001458	A new algorithm to diagnose atrial ectopic origin from multi lead ECG systems--insights from 3D virtual human atria and torso.
Q40265715	A new approach for determining phase response curves reveals that Purkinje cells can act as perfect integrators
Q64123094	A new clustering and nomenclature for beta turns derived from high-resolution protein structures
Q125910540	A new computational model illuminates the extraordinary eyes of Phronima
Q58798772	A new dynamic correlation algorithm reveals novel functional aspects in single cell and bulk RNA-seq data
Q93013510	A new framework for assessing subject-specific whole brain circulation and perfusion using MRI-based measurements and a multi-scale continuous flow model
Q38678827	A new index for characterizing micro-bead motion in a flow induced by ciliary beating: Part I, experimental analysis.
Q41017235	A new index for characterizing micro-bead motion in a flow induced by ciliary beating: Part II, modeling.
Q34299680	A new integrated variable based on thermometry, actimetry and body position (TAP) to evaluate circadian system status in humans.
Q92729776	A new method for inferring timetrees from temporally sampled molecular sequences
Q33760984	A new method to reconstruct recombination events at a genomic scale
Q27321259	A new model for pore formation by cholesterol-dependent cytolysins
Q35185964	A new online computational biology curriculum
Q34236551	A new perceptual bias reveals suboptimal population decoding of sensory responses
Q33288726	A new principle for information storage in an enzymatic pathway model
Q28539165	A new tool to quantify receptor recruitment to cell contact sites during host-pathogen interaction
Q33939651	A new view of the bacterial cytosol environment
Q34341324	A nonlinear dynamic approach reveals a long-term stroke effect on cerebral blood flow regulation at multiple time scales
Q118363104	A normative model of peripersonal space encoding as performing impact prediction
Q35182296	A normative theory of forgetting: lessons from the fruit fly
Q33332464	A novel Bayesian DNA motif comparison method for clustering and retrieval
Q35105595	A novel Bayesian method for detection of APOBEC3-mediated hypermutation and its application to zoonotic transmission of simian foamy viruses
Q36412349	A novel algorithm identifies stress-induced alterations in mitochondrial connectivity and inner membrane structure from confocal images
Q28476705	A novel approach to pharmacodynamic assessment of antimicrobial agents: new insights to dosing regimen design
Q113309240	A novel artificial intelligence-based approach for identification of deoxynucleotide aptamers
Q35182234	A novel cell traction force microscopy to study multi-cellular system
Q34411831	A novel computational method identifies intra- and inter-species recombination events in Staphylococcus aureus and Streptococcus pneumoniae
Q30913175	A novel extended Granger Causal Model approach demonstrates brain hemispheric differences during face recognition learning
Q92251851	A novel machine learning based approach for iPS progenitor cell identification
Q34212421	A novel model to combine clinical and pathway-based transcriptomic information for the prognosis prediction of breast cancer
Q91439295	A novel network control model for identifying personalized driver genes in cancer
Q33916096	A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness
Q97596839	A novel riboswitch classification based on imbalanced sequences achieved by machine learning
Q33506600	A novel scoring approach for protein co-purification data reveals high interaction specificity
Q98654820	A novel single-cell based method for breast cancer prognosis
Q113309388	A novel stochastic simulation approach enables exploration of mechanisms for regulating polarity site movement
Q113308841	A novel theoretical framework for simultaneous measurement of excitatory and inhibitory conductances
Q33360276	A novel three-phase model of brain tissue microstructure
Q104649867	A novel virtual screening procedure identifies Pralatrexate as inhibitor of SARS-CoV-2 RdRp and it reduces viral replication in vitro
Q113308950	A nowcasting framework for correcting for reporting delays in malaria surveillance
Q30837896	A nucleosome-guided map of transcription factor binding sites in yeast
Q113309442	A nucleosome-guided map of transcription factor binding sites in yeast
Q64234919	A numerical approach for a discrete Markov model for progressing drug resistance of cancer
Q27339363	A numerical approach to ion channel modelling using whole-cell voltage-clamp recordings and a genetic algorithm
Q28475856	A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes
Q113309024	A particle-based computational model to analyse remodelling of the red blood cell cytoskeleton during malaria infections
Q21092515	A peptide filtering relation quantifies MHC class I peptide optimization
Q28542761	A peptide-based method for 13C Metabolic Flux Analysis in microbial communities
Q38662538	A phase transition induces chaos in a predator-prey ecosystem with a dynamic fitness landscape.
Q113308535	A phenomenological computational model of the evoked action potential fitted to human cochlear implant responses
Q24811517	A phenomenological theory of spatially structured local synaptic connectivity
Q48105765	A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination
Q28764043	A phylogenomic study of human, dog, and mouse
Q113309203	A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale
Q34299351	A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE.
Q90186540	A plausible accelerating function of intermediate states in cancer metastasis
Q91226045	A population of bang-bang switches of defective interfering particles makes within-host dynamics of dengue virus controllable
Q35603499	A power-law dependence of bacterial invasion on mammalian host receptors
Q91806115	A powerful and versatile colocalization test
Q97686131	A practical application of generative adversarial networks for RNA-seq analysis to predict the molecular progress of Alzheimer's disease
Q33739427	A predictive coding account of bistable perception - a model-based fMRI study
Q28473966	A predictive model of the oxygen and heme regulatory network in yeast
Q34350851	A preformed binding interface in the unbound ensemble of an intrinsically disordered protein: evidence from molecular simulations
Q33296877	A primer on learning in Bayesian networks for computational biology
Q21145346	A primer on metagenomics
Q33308249	A primer on python for life science researchers
Q33404052	A primer on regression methods for decoding cis-regulatory logic
Q112608762	A probabilistic model for the ultradian timing of REM sleep in mice
Q21145357	A probabilistic model of RNA conformational space
Q21092573	A probabilistic model of local sequence alignment that simplifies statistical significance estimation
Q35238316	A probabilistic model to predict clinical phenotypic traits from genome sequencing
Q28651696	A probabilistic palimpsest model of visual short-term memory
Q52381779	A probabilistic, distributed, recursive mechanism for decision-making in the brain.
Q28755144	A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale
Q113308909	A proposed workflow for proactive virus surveillance and prediction of variants for vaccine design
Q34611097	A protein turnover signaling motif controls the stimulus-sensitivity of stress response pathways
Q47645789	A quadratically regularized functional canonical correlation analysis for identifying the global structure of pleiotropy with NGS data
Q35191116	A quantitative comparison of anti-HIV gene therapy delivered to hematopoietic stem cells versus CD4+ T cells
Q36273990	A quantitative model for the rate-limiting process of UGA alternative assignments to stop and selenocysteine codons
Q33818821	A quantitative model of transcriptional regulation reveals the influence of binding location on expression
Q90281045	A quantitative physical model of the TMS-induced discharge artifacts in EEG
Q33316812	A quantitative study of the division cycle of Caulobacter crescentus stalked cells
Q35053968	A quick guide for building a successful bioinformatics community
Q24810312	A quick guide for computer-assisted instruction in computational biology and bioinformatics
Q33521312	A quick guide for developing effective bioinformatics programming skills
Q64081977	A quick guide for student-driven community genome annotation
Q64060564	A quick guide for using Microsoft OneNote as an electronic laboratory notebook
Q35145003	A quick guide to genomics and bioinformatics training for clinical and public audiences.
Q33594385	A quick guide to large-scale genomic data mining
Q24273455	A quick guide to organizing computational biology projects
Q24273454	A quick guide to software licensing for the scientist-programmer
Q33497899	A quick guide to teaching R programming to computational biology students
Q34167831	A race between tumor immunoescape and genome maintenance selects for optimum levels of (epi)genetic instability
Q113308582	A randomization-based causal inference framework for uncovering environmental exposure effects on human gut microbiota
Q34350862	A range-normalization model of context-dependent choice: a new model and evidence
Q33529043	A reaction-diffusion model of ROS-induced ROS release in a mitochondrial network
Q27320465	A reaction-diffusion model of cholinergic retinal waves
Q33565511	A reaction-diffusion model of human brain development
Q27321421	A real-time all-atom structural search engine for proteins
Q34281483	A reappraisal of how to build modular, reusable models of biological systems.
Q101213239	A recurrent neural network framework for flexible and adaptive decision making based on sequence learning
Q59810715	A regularity index for dendrites - local statistics of a neuron's input space
Q36389375	A review of active learning approaches to experimental design for uncovering biological networks.
Q28478319	A role for both conformational selection and induced fit in ligand binding by the LAO protein
Q30946361	A role for rebinding in rapid and reliable T cell responses to antigen
Q64234933	A saturated reaction in repressor synthesis creates a daytime dead zone in circadian clocks
Q28480577	A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks
Q30842667	A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data.
Q33775510	A scalable approach for discovering conserved active subnetworks across species
Q28540035	A scalable computational framework for establishing long-term behavior of stochastic reaction networks
Q90218662	A scale-free analysis of the HIV-1 genome demonstrates multiple conserved regions of structural and functional importance
Q31129201	A self-directed method for cell-type identification and separation of gene expression microarrays.
Q30379997	A self-organizing algorithm for modeling protein loops.
Q34186899	A self-organizing state-space-model approach for parameter estimation in hodgkin-huxley-type models of single neurons
Q34058062	A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes
Q101468903	A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection
Q33325896	A semi-supervised method for predicting transcription factor-gene interactions in Escherichia coli
Q35067169	A sequential vesicle pool model with a single release sensor and a Ca(2+)-dependent priming catalyst effectively explains Ca(2+)-dependent properties of neurosecretion
Q39874167	A signature of attractor dynamics in the CA3 region of the hippocampus.
Q63343855	A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila
Q28482317	A simple histone code opens many paths to epigenetics
Q34625308	A simple iterative model accurately captures complex trapline formation by bumblebees across spatial scales and flower arrangements
Q125346879	A simple kit to use computational notebooks for more openness, reproducibility, and productivity in research
Q96836674	A simple model for learning in volatile environments
Q35224371	A simple model of optimal population coding for sensory systems
Q35018018	A simple rule for dendritic spine and axonal bouton formation can account for cortical reorganization after focal retinal lesions
Q33654162	A simple self-maintaining metabolic system: robustness, autocatalysis, bistability
Q100310679	A simple, scalable approach to building a cross-platform transcriptome atlas
Q90356290	A simplified modelling framework facilitates more complex representations of plant circadian clocks
Q35165212	A simulated intermediate state for folding and aggregation provides insights into ΔN6 β2-microglobulin amyloidogenic behavior
Q90561556	A simulation of the random and directed motion of dendritic cells in chemokine fields
Q38597831	A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms
Q92658784	A single reaction-diffusion equation for the multifarious eruptions of urticaria
Q42703015	A single-cell spiking model for the origin of grid-cell patterns
Q34042628	A single-rate context-dependent learning process underlies rapid adaptation to familiar object dynamics.
Q34064180	A sparse coding model with synaptically local plasticity and spiking neurons can account for the diverse shapes of V1 simple cell receptive fields
Q34276955	A spatial model of mosquito host-seeking behavior
Q64099567	A spatio-temporal individual-based network framework for West Nile virus in the USA: Spreading pattern of West Nile virus
Q113308860	A spatio-temporal model to reveal oscillator phenotypes in molecular clocks: Parameter estimation elucidates circadian gene transcription dynamics in single-cells
Q113309315	A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar
Q64117645	A spectrum of routing strategies for brain networks
Q36390761	A state space approach for piecewise-linear recurrent neural networks for identifying computational dynamics from neural measurements
Q31133137	A statistical framework for modeling HLA-dependent T cell response data
Q35418740	A statistical method of identifying interactions in neuron-glia systems based on functional multicell Ca2+ imaging
Q113309351	A statistical model for describing and simulating microbial community profiles
Q33504541	A statistical model to identify differentially expressed proteins in 2D PAGE gels
Q98730482	A steady-state model of microbial acclimation to substrate limitation
Q49925372	A stochastic and dynamical view of pluripotency in mouse embryonic stem cells.
Q60309401	A stochastic framework to model axon interactions within growing neuronal populations
Q33521295	A stochastic model for microtubule motors describes the in vivo cytoplasmic transport of human adenovirus
Q89679108	A stochastic model for simulating ribosome kinetics in vivo
Q28477926	A stochastic model of latently infected cell reactivation and viral blip generation in treated HIV patients
Q64123078	A stochastic simulation of skeletal muscle calcium transients in a structurally realistic sarcomere model using MCell
Q27339309	A stochastic view of spliceosome assembly and recycling in the nucleus
Q41445073	A stochastic-field description of finite-size spiking neural networks.
Q113309341	A strategy for mapping biophysical to abstract neuronal network models applied to primary visual cortex
Q33434461	A structural model of the pore-forming region of the skeletal muscle ryanodine receptor (RyR1)
Q30422738	A structural systems biology approach for quantifying the systemic consequences of missense mutations in proteins.
Q33441359	A structure-based approach for detection of thiol oxidoreductases and their catalytic redox-active cysteine residues
Q113308552	A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission
Q33500137	A structured model of video reproduces primary visual cortical organisation
Q33287187	A survey of genomic properties for the detection of regulatory polymorphisms
Q28477095	A switching mechanism in doxorubicin bioactivation can be exploited to control doxorubicin toxicity
Q35151597	A synergism between adaptive effects and evolvability drives whole genome duplication to fixation
Q92914373	A system for tracking whisker kinematics and whisker shape in three dimensions
Q91728866	A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli
Q126057813	A systematic analysis of regression models for protein engineering
Q96693010	A systematic approach to decipher crosstalk in the p53 signaling pathway using single cell dynamics
Q33326976	A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
Q47205509	A systematic atlas of chaperome deregulation topologies across the human cancer landscape
Q35488903	A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis
Q96432039	A systematic evaluation of Mycobacterium tuberculosis Genome-Scale Metabolic Networks
Q21145303	A systematic framework for molecular dynamics simulations of protein post-translational modifications
Q94553085	A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type
Q90816283	A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries
Q38625636	A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines
Q35261034	A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks
Q33419831	A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis
Q34016181	A systems biology approach identifies molecular networks defining skeletal muscle abnormalities in chronic obstructive pulmonary disease
Q113308915	A systems genomics approach uncovers molecular associates of RSV severity
Q33769731	A systems model for immune cell interactions unravels the mechanism of inflammation in human skin
Q96964016	A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms
Q36364294	A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration
Q34097774	A tale of two stories: astrocyte regulation of synaptic depression and facilitation
Q21092514	A taxonomy of bacterial microcompartment loci constructed by a novel scoring method
Q42703017	A theoretical framework for analyzing coupled neuronal networks: Application to the olfactory system
Q28543681	A theoretical justification for single molecule peptide sequencing
Q64123082	A theoretical single-parameter model for urbanisation to study infectious disease spread and interventions
Q47727662	A theory of how active behavior stabilises neural activity: Neural gain modulation by closed-loop environmental feedback.
Q34139905	A theory of rate coding control by intrinsic plasticity effects
Q36308919	A thermodynamically consistent model of the post-translational Kai circadian clock
Q25255969	A third approach to gene prediction suggests thousands of additional human transcribed regions
Q28477678	A third measure-metastable state in the dynamics of spontaneous shape change in healthy human's white cells
Q30382494	A threading-based method for the prediction of DNA-binding proteins with application to the human genome.
Q33489613	A three species model to simulate application of Hyperbaric Oxygen Therapy to chronic wounds
Q113308747	A three-dimensional multiscale model for the prediction of thrombus growth under flow with single-platelet resolution
Q94445715	A three-dimensional phase-field model for multiscale modeling of thrombus biomechanics in blood vessels
Q30480532	A threshold equation for action potential initiation
Q35151648	A toolbox for representational similarity analysis
Q33916616	A toolbox model of evolution of metabolic pathways on networks of arbitrary topology
Q113308581	A topological data analytic approach for discovering biophysical signatures in protein dynamics
Q34388405	A topological paradigm for hippocampal spatial map formation using persistent homology
Q101061597	A transcriptome-based classifier to determine molecular subtypes in medulloblastoma
Q28535097	A tunable coarse-grained model for ligand-receptor interaction
Q27330614	A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath
Q34758193	A two-stage cascade model of BOLD responses in human visual cortex
Q34671742	A two-state model for the dynamics of the pyrophosphate ion release in bacterial RNA polymerase
Q112725081	A unified framework for inferring the multi-scale organization of chromatin domains from Hi-C
Q113309125	A unified mechanism for innate and learned visual landmark guidance in the insect central complex
Q35105568	A unified model of heading and path perception in primate MSTd
Q35563374	A unified model of shoot tropism in plants: photo-, gravi- and Propio-ception
Q28539606	A unified view of "how allostery works"
Q42656885	A unifying Bayesian account of contextual effects in value-based choice
Q35185947	A unifying mechanistic model of selective attention in spiking neurons
Q95846158	A unifying model for the propagation of prion proteins in yeast brings insight into the [PSI+] prion
Q27339179	A universal mechanism ties genotype to phenotype in trinucleotide diseases
Q113309432	A universal mechanism ties genotype to phenotype in trinucleotide diseases
Q21145308	A universal trend among proteomes indicates an oily last common ancestor
Q33530134	A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes
Q96693345	A validation framework for neuroimaging software: The case of population receptive fields
Q33530087	A variant of TNFR2-Fc fusion protein exhibits improved efficacy in treating experimental rheumatoid arthritis
Q112615616	A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways
Q35865457	A view from the dark side
Q34126254	A viral dynamic model for treatment regimens with direct-acting antivirals for chronic hepatitis C infection
Q35105573	A virtual infection model quantifies innate effector mechanisms and Candida albicans immune escape in human blood
Q113308969	A weighted constraint satisfaction approach to human goal-directed decision making
Q34098022	A whole-body model for glycogen regulation reveals a critical role for substrate cycling in maintaining blood glucose homeostasis
Q123557834	A zero-agnostic model for copy number evolution in cancer
Q113308495	AC-PCoA: Adjustment for confounding factors using principal coordinate analysis
Q91767666	ACAP1 assembles into an unusual protein lattice for membrane deformation through multiple stages
Q34510104	ACME: automated cell morphology extractor for comprehensive reconstruction of cell membranes
Q34557978	ADEMA: an algorithm to determine expected metabolite level alterations using mutual information
Q98169759	ADP is the dominant controller of AMP-activated protein kinase activity dynamics in skeletal muscle during exercise
Q113309144	AIM: A network model of attention in auditory cortex
Q113308770	AIME: Autoencoder-based integrative multi-omics data embedding that allows for confounder adjustments
Q36288446	ALKBH7 Variant Related to Prostate Cancer Exhibits Altered Substrate Binding
Q113309487	ANALYSIS OF INTRACELLULAR SIGNALING KINETICS PREDICTS PRESENTATION MODES AND TARGETS FOR STEM CELL FATE CONTROL
Q28661896	APBioNet-transforming bioinformatics in the Asia-Pacific region
Q28551424	APP Is a Context-Sensitive Regulator of the Hippocampal Presynaptic Active Zone
Q36330324	ARACHNE: A neural-neuroglial network builder with remotely controlled parallel computing.
Q90064904	ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates
Q113309208	ASCENT (Automated Simulations to Characterize Electrical Nerve Thresholds): A pipeline for sample-specific computational modeling of electrical stimulation of peripheral nerves
Q36270111	ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour.
Q36078716	ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains
Q35169123	ATPase subdomain IA is a mediator of interdomain allostery in Hsp70 molecular chaperones
Q113308481	ATRPred: A machine learning based tool for clinical decision making of anti-TNF treatment in rheumatoid arthritis patients
Q113309578	Ab Initio Modeling of the Herpesvirus VP26 Core Domain Assessed by CryoEM Density
Q34671755	Ab initio modeling and experimental assessment of Janus Kinase 2 (JAK2) kinase-pseudokinase complex structure
Q33261808	Ab initio modeling of the herpesvirus VP26 core domain assessed by CryoEM density
Q24811418	Ab initio prediction of transcription factor targets using structural knowledge
Q92072618	Aberrant DNA methylation defines isoform usage in cancer, with functional implications
Q100391599	Aberrant computational mechanisms of social learning and decision-making in schizophrenia and borderline personality disorder
Q33761271	Abnormal cortical networks in mild cognitive impairment and Alzheimer's disease
Q42918181	About dice, bouldering, and team empowerment: running the CompOmics group at VIB and Ghent University, Belgium
Q58730605	Abstract concept learning in a simple neural network inspired by the insect brain
Q29547576	Accelerated Profile HMM Searches
Q28475890	Accelerated immunodeficiency by anti-CCR5 treatment in HIV infection
Q125407016	Accelerating Bayesian inference of dependency between mixed-type biological traits
Q94657945	Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC
Q28484021	Accessible high-throughput virtual screening molecular docking software for students and educators
Q33886144	Accessing a hidden conformation of the maltose binding protein using accelerated molecular dynamics
Q113309623	Accessing the Accuracy of Ancestral Protein Reconstruction Methods
Q56788344	Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models
Q92115040	Accounting for red blood cell accessibility reveals distinct invasion strategies in Plasmodium falciparum strains
Q113309325	Accumulation of continuously time-varying sensory evidence constrains neural and behavioral responses in human collision threat detection
Q36273984	Accuracy Maximization Analysis for Sensory-Perceptual Tasks: Computational Improvements, Filter Robustness, and Coding Advantages for Scaled Additive Noise
Q113265285	Accuracy in the prediction of disease epidemics when ensembling simple but highly correlated models
Q28550230	Accuracy of Answers to Cell Lineage Questions Depends on Single-Cell Genomics Data Quality and Quantity
Q33549705	Accuracy of protein-protein binding sites in high-throughput template-based modeling
Q91396086	Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
Q27316112	Accurate Automatic Detection of Densely Distributed Cell Nuclei in 3D Space
Q30364844	Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
Q33851550	Accurate and fast simulation of channel noise in conductance-based model neurons by diffusion approximation
Q60932158	Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics
Q35581820	Accurate computation of survival statistics in genome-wide studies
Q33419822	Accurate detection of recombinant breakpoints in whole-genome alignments
Q33565380	Accurate distinction of pathogenic from benign CNVs in mental retardation
Q28547708	Accurate encoding and decoding by single cells: amplitude versus frequency modulation
Q113309256	Accurate influenza forecasts using type-specific incidence data for small geographic units
Q21145367	Accurate path integration in continuous attractor network models of grid cells
Q33495541	Accurate prediction of DnaK-peptide binding via homology modelling and experimental data
Q104059181	Accurate prediction of kinase-substrate networks using knowledge graphs
Q33422930	Accurate prediction of peptide binding sites on protein surfaces.
Q31108126	Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e
Q33815544	Accurate quantification of functional analogy among close homologs
Q28472205	Accurate structural correlations from maximum likelihood superpositions
Q113309398	Accurate structural correlations from maximum likelihood superpositions
Q113308550	Accurate, high-coverage assignment of in vivo protein kinases to phosphosites from in vitro phosphoproteomic specificity data
Q28473807	Accurately measuring recombination between closely related HIV-1 genomes
Q103744776	Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli
Q113309103	Acetylcholine-gated current translates wake neuronal firing rate information into a spike timing-based code in Non-REM sleep, stabilizing neural network dynamics during memory consolidation
Q36348397	Achieving global perfect homeostasis through transporter regulation
Q33598552	Achieving optimal growth through product feedback inhibition in metabolism
Q98238217	Achieving stable dynamics in neural circuits
Q113265281	Acoustic traits of bat-pollinated flowers compared to flowers of other pollination syndromes and their echo-based classification using convolutional neural networks
Q53436280	Across-subjects classification of stimulus modality from human MEG high frequency activity.
Q113309100	Action planning and control under uncertainty emerge through a desirability-driven competition between parallel encoding motor plans
Q33628861	Action potential energy efficiency varies among neuron types in vertebrates and invertebrates
Q33400316	Action potential initiation in the hodgkin-huxley model
Q90770185	Action potential propagation and synchronisation in myelinated axons
Q35067173	Actions, action sequences and habits: evidence that goal-directed and habitual action control are hierarchically organized
Q36271522	Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.
Q27333557	Activated membrane patches guide chemotactic cell motility
Q52346311	Activation gating in HCN2 channels.
Q35539901	Activation of parallel fiber feedback by spatially diffuse stimuli reduces signal and noise correlations via independent mechanisms in a cerebellum-like structure.
Q64389171	Activation of the DNA-repair mechanism through NBS1 and MRE11 diffusion
Q40987679	Active Vertex Model for cell-resolution description of epithelial tissue mechanics
Q60932175	Active degradation of MarA controls coordination of its downstream targets
Q33466801	Active dendrites enhance neuronal dynamic range
Q58084792	Active dendrites regulate the spatiotemporal spread of signaling microdomains
Q113308559	Active inference unifies intentional and conflict-resolution imperatives of motor control
Q35151816	Active learning to understand infectious disease models and improve policy making
Q30845026	Active nuclear receptors exhibit highly correlated AF-2 domain motions
Q112617537	Active probing to highlight approaching transitions to ictal states in coupled neural mass models
Q31086948	Activity dependent degeneration explains hub vulnerability in Alzheimer's disease
Q34582935	Activity in inferior parietal and medial prefrontal cortex signals the accumulation of evidence in a probability learning task.
Q28472692	Acute effects of sex steroid hormones on susceptibility to cardiac arrhythmias: a simulation study
Q94606230	Ad hoc efforts for advancing data science education
Q30978121	Adaptable functionality of transcriptional feedback in bacterial two-component systems
Q30493262	Adaptation and selective information transmission in the cricket auditory neuron AN2
Q34998171	Adaptation dynamics in densely clustered chemoreceptors
Q91226205	Adaptation in structured populations and fuzzy boundaries between hard and soft sweeps
Q112431451	Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem
Q113309241	Adaptation supports short-term memory in a visual change detection task
Q33247450	Adaptation to different human populations by HIV-1 revealed by codon-based analyses
Q57247685	Adaptation to different human populations by HIV-1 revealed by codon-based analysis
Q33793241	Adaptation towards scale-free dynamics improves cortical stimulus discrimination at the cost of reduced detection
Q28552806	Adaptive Landscape by Environment Interactions Dictate Evolutionary Dynamics in Models of Drug Resistance
Q36148012	Adaptive Remodeling of Achilles Tendon: A Multi-scale Computational Model
Q36052931	Adaptive Spike Threshold Enables Robust and Temporally Precise Neuronal Encoding
Q30279014	Adaptive Synaptogenesis Constructs Neural Codes That Benefit Discrimination
Q113308656	Adaptive and optimized COVID-19 vaccination strategies across geographical regions and age groups
Q33680664	Adaptive contact networks change effective disease infectiousness and dynamics
Q112581642	Adaptive control of movement deceleration during saccades
Q59793599	Adaptive feature detection from differential processing in parallel retinal pathways
Q125475663	Adaptive foraging of pollinators fosters gradual tipping under resource competition and rapid environmental change
Q33519514	Adaptive gain modulation in V1 explains contextual modifications during bisection learning
Q100499602	Adaptive immunity selects against malaria infection blocking mutations
Q92518183	Adaptive landscape flattening allows the design of both enzyme: Substrate binding and catalytic power
Q64096900	Adaptive multi-view multi-label learning for identifying disease-associated candidate miRNAs
Q113265288	Adaptive social contact rates induce complex dynamics during epidemics
Q28481278	Adaptive temperature compensation in circadian oscillations
Q21145663	Adaptive, fast walking in a biped robot under neuronal control and learning
Q34539744	Adding protein context to the human protein-protein interaction network to reveal meaningful interactions.
Q108898662	Addition of new neurons and the emergence of a local neural circuit for precise timing
Q113308545	Addressing delayed case reporting in infectious disease forecast modeling
Q113308670	Addressing the mean-correlation relationship in co-expression analysis
Q27331651	Adhesion failures determine the pattern of choroidal neovascularization in the eye: a computer simulation study
Q113308784	Adhesion-regulated junction slippage controls cell intercalation dynamics in an Apposed-Cortex Adhesion Model
Q38660212	Adjudicating between face-coding models with individual-face fMRI responses
Q28478888	Adjusting phenotypes by noise control
Q33372090	Advanced genomic data mining
Q34876324	Advancements and challenges in computational biology
Q38669971	Advances in using Internet searches to track dengue
Q113238604	Advancing code sharing in the computational biology community
Q21092566	Adventures in semantic publishing: exemplar semantic enhancements of a research article
Q113309075	Aedes-AI: Neural network models of mosquito abundance
Q100732634	After the honeymoon, the divorce: Unexpected outcomes of disease control measures against endemic infections
Q89259179	Age density patterns in patients medical conditions: A clustering approach
Q63888609	Age-dependent Pavlovian biases influence motor decision-making
Q33388239	Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence
Q94511974	Agent-based and continuous models of hopper bands for the Australian plague locust: How resource consumption mediates pulse formation and geometry
Q30440173	Agent-based model of therapeutic adipose-derived stromal cell trafficking during ischemia predicts ability to roll on P-selectin.
Q64108565	Agent-based modeling of morphogenetic systems: Advantages and challenges
Q27322620	Agent-based modeling of oxygen-responsive transcription factors in Escherichia coli
Q100939918	Aggregating forecasts of multiple respiratory pathogens supports more accurate forecasting of influenza-like illness
Q28473772	Aggregation propensity of the human proteome
Q92564078	Aggressive or moderate drug therapy for infectious diseases? Trade-offs between different treatment goals at the individual and population levels
Q97555243	AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments
Q99603627	Alcoholic liver disease: A registry view on comorbidities and disease prediction
Q33981594	Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics
Q36153566	AlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework
Q33419102	Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution
Q31172508	Alkylpurine glycosylase D employs DNA sculpting as a strategy to extrude and excise damaged bases
Q58723452	All-atom normal mode dynamics of HIV-1 capsid
Q99568745	All-atom simulation of the HET-s prion replication
Q112701332	All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons
Q113309331	Allele imputation for the killer cell immunoglobulin-like receptor KIR3DL1/S1
Q113309666	Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis
Q24811573	Allele-specific amplification in cancer revealed by SNP array analysis
Q35261257	Allele-specific network reveals combinatorial interaction that transcends small effects in psoriasis GWAS.
Q34395251	Allosteric communication across the native and mutated KIT receptor tyrosine kinase
Q27336399	Allosteric communication in myosin V: from small conformational changes to large directed movements
Q27336095	Allosteric communication occurs via networks of tertiary and quaternary motions in proteins
Q42362183	Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations
Q62761873	Allosteric mechanism of the circadian protein Vivid resolved through Markov state model and machine learning analysis
Q47137936	Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbil.
Q33432712	Allosteric transitions of supramolecular systems explored by network models: application to chaperonin GroEL.
Q52586095	Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations.
Q113308654	Allostery in the dynamic coactivator domain KIX occurs through minor conformational micro-states
Q28552596	Allostery: An Overview of Its History, Concepts, Methods, and Applications
Q36217569	Alpha Helices Are More Robust to Mutations than Beta Strands
Q113308633	Alpha blocking and 1/fβ spectral scaling in resting EEG can be accounted for by a sum of damped alpha band oscillatory processes
Q28476509	Alterations in brain connectivity underlying beta oscillations in Parkinsonism
Q91878811	Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level
Q42370244	Altering neuronal excitability to preserve network connectivity in a computational model of Alzheimer's disease
Q113309454	Alternative Splicing Events Identified in Human Embryonic Stem Cells and Neural Progenitors
Q34372281	Alternative protein-protein interfaces are frequent exceptions
Q33304209	Alternative splicing events identified in human embryonic stem cells and neural progenitors
Q33515260	Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors
Q35659656	Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.
Q33519498	Alu and b1 repeats have been selectively retained in the upstream and intronic regions of genes of specific functional classes
Q33415448	Alu exonization events reveal features required for precise recognition of exons by the splicing machinery
Q30356969	Amino acid changes in disease-associated variants differ radically from variants observed in the 1000 genomes project dataset.
Q36342095	Amino acid composition predicts prion activity
Q33533288	Amplification of asynchronous inhibition-mediated synchronization by feedback in recurrent networks
Q92074459	Amplifying the redistribution of somato-dendritic inhibition by the interplay of three interneuron types
Q91728939	Amplitude cancellation influences the association between frequency components in the neural drive to muscle and the rectified EMG signal
Q33429003	Amyloidogenesis abolished by proline substitutions but enhanced by lipid binding
Q33495551	Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases
Q28472557	An AP endonuclease 1-DNA polymerase beta complex: theoretical prediction of interacting surfaces
Q28606639	An Adapting Auditory-motor Feedback Loop Can Contribute to Generating Vocal Repetition
Q36263765	An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts
Q36276889	An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.
Q28551615	An Electrostatic Funnel in the GABA-Binding Pathway
Q27318402	An Emerging Allee Effect Is Critical for Tumor Initiation and Persistence
Q28548216	An Evolutionary Approach for Identifying Driver Mutations in Colorectal Cancer
Q90623146	An Evolutionary Trace method defines functionally important bases and sites common to RNA families
Q113309434	An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope
Q35624301	An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse
Q35818532	An Exploration of the Universe of Polyglutamine Structures
Q36224698	An Extended Normalization Model of Attention Accounts for Feature-Based Attentional Enhancement of Both Response and Coherence Gain
Q30363755	An HIV epidemic model based on viral load dynamics: value in assessing empirical trends in HIV virulence and community viral load
Q33748298	An HMM-based comparative genomic framework for detecting introgression in eukaryotes
Q27318261	An Integrated Framework Advancing Membrane Protein Modeling and Design
Q36194984	An Integrative Approach to Computational Modelling of the Gene Regulatory Network Controlling Clostridium botulinum Type A1 Toxin Production
Q113309618	An Integrative Method for Accurate Comparative Genome Mapping
Q30276646	An Introduction to Programming for Bioscientists: A Python-Based Primer
Q27318453	An Optimal Free Energy Dissipation Strategy of the MinCDE Oscillator in Regulating Symmetric Bacterial Cell Division
Q35836998	An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States
Q33518463	An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data
Q28478315	An acidic loop and cognate phosphorylation sites define a molecular switch that modulates ubiquitin charging activity in Cdc34-like enzymes
Q57794088	An agent-based model for drug-radiation interactions in the tumour microenvironment: Hypoxia-activated prodrug SN30000 in multicellular tumour spheroids
Q63246309	An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections
Q36380070	An agent-based model of leukocyte transendothelial migration during atherogenesis
Q36355141	An aggregation-removal model for the formation and size determination of post-synaptic scaffold domains
Q36593616	An allosteric mechanism for switching between parallel tracks in mammalian sulfur metabolism
Q31148716	An allosteric signaling pathway of human 3-phosphoglycerate kinase from force distribution analysis
Q28474361	An analysis of enzyme kinetics data for mitochondrial DNA strand termination by nucleoside reverse transcription inhibitors
Q100446249	An analysis of tissue-specific alternative splicing at the protein level
Q33428989	An analytically solvable model for rapid evolution of modular structure
Q113309168	An approximate stochastic optimal control framework to simulate nonlinear neuro-musculoskeletal models in the presence of noise
Q113309346	An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes
Q113309266	An association between prediction errors and risk-seeking: Theory and behavioral evidence
Q37377418	An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations
Q58780106	An automated approach to the quantitation of vocalizations and vocal learning in the songbird
Q33742075	An automated phenotype-driven approach (GeneForce) for refining metabolic and regulatory models
Q92874810	An educational guide for nanopore sequencing in the classroom
Q36409229	An efficient coding theory for a dynamic trajectory predicts non-uniform allocation of entorhinal grid cells to modules.
Q47096318	An efficient moments-based inference method for within-host bacterial infection dynamics
Q113309393	An electrodiffusive neuron-extracellular-glia model for exploring the genesis of slow potentials in the brain
Q94457559	An electrodiffusive, ion conserving Pinsky-Rinzel model with homeostatic mechanisms
Q28756904	An end to endless forms: epistasis, phenotype distribution bias, and nonuniform evolution
Q90442733	An enormous potential for niche construction through bacterial cross-feeding in a homogeneous environment
Q64123074	An enriched network motif family regulates multistep cell fate transitions with restricted reversibility
Q113308469	An ensemble forecast system for tracking dynamics of dengue outbreaks and its validation in China
Q52369415	An entropic barriers diffusion theory of decision-making in multiple alternative tasks.
Q34611048	An entropic mechanism of generating selective ion binding in macromolecules
Q47238519	An error-tuned model for sensorimotor learning.
Q35034131	An evolution-based approach to De Novo protein design and case study on Mycobacterium tuberculosis.
Q50421394	An evolutionary learning and network approach to identifying key metabolites for osteoarthritis.
Q28471994	An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1
Q33951931	An evolutionary trade-off between protein turnover rate and protein aggregation favors a higher aggregation propensity in fast degrading proteins
Q33307183	An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope.
Q103744224	An exact method for quantifying the reliability of end-of-epidemic declarations in real time
Q27322327	An expanded Notch-Delta model exhibiting long-range patterning and incorporating MicroRNA regulation
Q27335660	An experimental and computational study of the effect of ActA polarity on the speed of Listeria monocytogenes actin-based motility
Q97893913	An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets
Q112296571	An extended catalogue of tandem alternative splice sites in human tissue transcriptomes
Q35529807	An extra dimension to decision-making in animals: the three-way trade-off between speed, effort per-unit-time and accuracy
Q33904009	An imperfect dopaminergic error signal can drive temporal-difference learning
Q91296249	An in silico analysis of robust but fragile gene regulation links enhancer length to robustness
Q97677917	An in vitro quantitative systems pharmacology approach for deconvolving mechanisms of drug-induced, multilineage cytopenias
Q90634639	An in-silico human cell model reveals the influence of spatial organization on RNA splicing
Q28540807	An in-silico model of lipoprotein metabolism and kinetics for the evaluation of targets and biomarkers in the reverse cholesterol transport pathway
Q33739437	An independent component analysis confounding factor correction framework for identifying broad impact expression quantitative trait loci
Q91373410	An inelastic quadrupedal model discovers four-beat walking, two-beat running, and pseudo-elastic actuation as energetically optimal
Q57149625	An information theoretic treatment of sequence-to-expression modeling
Q33293151	An information-theoretic characterization of the optimal gradient sensing response of cells
Q113309476	An information-theoretic characterization of the optimal gradient sensing response of cells
Q113308833	An initial ‘snapshot’ of sensory information biases the likelihood and speed of subsequent changes of mind
Q35172424	An innovative influenza vaccination policy: targeting last season's patients
Q35568934	An integrated approach to reconstructing genome-scale transcriptional regulatory networks
Q36395068	An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics
Q28489081	An integrated computational/experimental model of lymphoma growth
Q34055262	An integrated disease/pharmacokinetic/pharmacodynamic model suggests improved interleukin-21 regimens validated prospectively for mouse solid cancers
Q113309175	An integrated framework for building trustworthy data-driven epidemiological models: Application to the COVID-19 outbreak in New York City
Q30787173	An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding
Q36119908	An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors
Q33525505	An integrative -omics approach to identify functional sub-networks in human colorectal cancer
Q35588806	An integrative approach for modeling and simulation of heterocyst pattern formation in cyanobacteria filaments.
Q21145674	An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits
Q59661837	An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits
Q33255322	An integrative method for accurate comparative genome mapping
Q34558001	An integrative model of ion regulation in yeast
Q33691427	An integrative multi-network and multi-classifier approach to predict genetic interactions
Q64060558	An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritis
Q21145376	An introduction to bioinformatics for glycomics research
Q27334577	An introduction to biomolecular graphics
Q30424804	An online bioinformatics curriculum
Q24811461	An open forum for computational biology
Q55316384	An open source tool for automatic spatiotemporal assessment of calcium transients and local 'signal-close-to-noise' activity in calcium imaging data.
Q94511915	An open source tool to infer epidemiological and immunological dynamics from serological data: Serosolver
Q38619957	An optimal strategy for epilepsy surgery: Disruption of the rich-club?
Q113309282	An uncertainty-based model of the effects of fixation on choice
Q112686598	Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers
Q113309121	Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
Q33587458	Analysis and computational dissection of molecular signature multiplicity
Q112286610	Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites
Q35760914	Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates
Q35758599	Analysis of Single Locus Trajectories for Extracting In Vivo Chromatin Tethering Interactions
Q33355433	Analysis of a gene regulatory cascade mediating circadian rhythm in zebrafish.
Q24814337	Analysis of a splice array experiment elucidates roles of chromatin elongation factor Spt4-5 in splicing
Q34671677	Analysis of accuracy in pointing with redundant hand-held tools: a geometric approach to the uncontrolled manifold method.
Q33594369	Analysis of combinatorial regulation: scaling of partnerships between regulators with the number of governed targets
Q113308476	Analysis of emergent patterns in crossing flows of pedestrians reveals an invariant of ‘stripe’ formation in human data
Q21563498	Analysis of gene regulatory networks in the mammalian circadian rhythm
Q33880781	Analysis of graph invariants in functional neocortical circuitry reveals generalized features common to three areas of sensory cortex
Q34334375	Analysis of hepatitis C virus decline during treatment with the protease inhibitor danoprevir using a multiscale model
Q28542982	Analysis of individual protein regions provides novel insights on cancer pharmacogenomics
Q27324161	Analysis of initial cell spreading using mechanistic contact formulations for a deformable cell model
Q112703268	Analysis of localized cAMP perturbations within a tissue reveal the effects of a local, dynamic gap junction state on ERK signaling
Q28488611	Analysis of physicochemical and structural properties determining HIV-1 coreceptor usage
Q112750965	Analysis of protrusion dynamics in amoeboid cell motility by means of regularized contour flows
Q33312848	Analysis of sequence conservation at nucleotide resolution
Q113309420	Analysis of sequence conservation at nucleotide resolution
Q30462499	Analysis of slow (theta) oscillations as a potential temporal reference frame for information coding in sensory cortices
Q28476076	Analysis of stochastic strategies in bacterial competence: a master equation approach
Q33946297	Analysis of stop-gain and frameshift variants in human innate immunity genes
Q34426332	Analysis of surface protein expression reveals the growth pattern of the gram-negative outer membrane
Q45944843	Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster.
Q113308761	Analysis of the docking property of host variants of hACE2 for SARS-CoV-2 in a large cohort
Q33480934	Analysis of the free-energy surface of proteins from reversible folding simulations
Q28540822	Analysis of the protein domain and domain architecture content in fungi and its application in the search of new antifungal targets
Q42363615	Analysis of the relationship between coexpression domains and chromatin 3D organization
Q112649869	Analytical kinetic model of native tandem promoters in E. coli
Q33388209	Analyzing ChIP-chip data using bioconductor
Q35800316	Analyzing and Quantifying the Gain-of-Function Enhancement of IP3 Receptor Gating by Familial Alzheimer's Disease-Causing Mutants in Presenilins.
Q35004427	Analyzing and synthesizing phylogenies using tree alignment graphs
Q112283248	Analyzing nested experimental designs-A user-friendly resampling method to determine experimental significance
Q91923339	Analyzing pharmacological intervention points: A method to calculate external stimuli to switch between steady states in regulatory networks
Q21145349	Analyzing short-term noise dependencies of spike-counts in macaque prefrontal cortex using copulas and the flashlight transformation
Q34017506	Analyzing the functional properties of the creatine kinase system with multiscale 'sloppy' modeling
Q63403759	Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm
Q92982348	Anatomically accurate model of EMG during index finger flexion and abduction derived from diffusion tensor imaging
Q113308524	Anatomy of the first six months of COVID-19 vaccination campaign in Italy
Q97566215	AncesTree: An interactive immunoglobulin lineage tree visualizer
Q28596371	Ancestral Reconstruction
Q90970599	Ancestral reconstruction of protein interaction networks
Q27324838	Angiogenesis: an adaptive dynamic biological patterning problem
Q35175852	Angiogenic activity of breast cancer patients' monocytes reverted by combined use of systems modeling and experimental approaches
Q113309423	Animal Cell Differentiation Patterns Suppress Somatic Evolution
Q21145656	Animal cell differentiation patterns suppress somatic evolution
Q27333764	Animal interactions and the emergence of territoriality
Q113309173	Ankyrin repeats in context with human population variation
Q112616891	AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses
Q35945884	Annealed Importance Sampling for Neural Mass Models
Q113308634	Annotating functional effects of non-coding variants in neuropsychiatric cell types by deep transfer learning
Q21145347	Annotation error in public databases: misannotation of molecular function in enzyme superfamilies
Q113308471	Annotation-free delineation of prokaryotic homology groups
Q113308562	Anomalous diffusion and asymmetric tempering memory in neutrophil chemotaxis
Q35801509	Antagonistic Coevolution Drives Whack-a-Mole Sensitivity in Gene Regulatory Networks
Q35672986	Antenna Mechanism of Length Control of Actin Cables
Q28545750	Antibiotic Restriction Might Facilitate the Emergence of Multi-drug Resistance
Q112063296	Antibody Watch: Text mining antibody specificity from the literature
Q122922341	Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants
Q33981600	Antibody responses during hepatitis B viral infection
Q55427959	Anticipating epidemic transitions with imperfect data.
Q35202598	Anticipation and choice heuristics in the dynamic consumption of pain relief
Q91396117	Anticipatory coadaptation of ankle stiffness and sensorimotor gain for standing balance
Q33511747	Antigenic diversity, transmission mechanisms, and the evolution of pathogens
Q34987966	Antimicrobial peptides design by evolutionary multiobjective optimization
Q28553594	Antioxidant Properties of Kynurenines: Density Functional Theory Calculations
Q112644060	Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection
Q35864356	Anxiety-Like Behavioural Inhibition Is Normative under Environmental Threat-Reward Correlations.
Q35823248	ApoE4-specific Misfolded Intermediate Identified by Molecular Dynamics Simulations
Q64256249	Apollo: Democratizing genome annotation
Q35215879	Apoptotic lymphocytes of H. sapiens lose nucleosomes in GC-rich promoters
Q36174889	Apparent Motion Suppresses Responses in Early Visual Cortex: A Population Code Model
Q35966175	Application of Rigidity Theory to the Thermostabilization of Lipase A from Bacillus subtilis
Q33842160	Application of biomarkers in cancer risk management: evaluation from stochastic clonal evolutionary and dynamic system optimization points of view
Q113309192	Application of modular response analysis to medium- to large-size biological systems
Q24288781	Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).
Q113308577	Appropriate relaxation of non-pharmaceutical interventions minimizes the risk of a resurgence in SARS-CoV-2 infections in spite of the Delta variant
Q4781761	Approximate Bayesian computation
Q64114710	Approximate Bayesian estimation of coevolutionary arms races
Q36251187	Approximate Inference for Time-Varying Interactions and Macroscopic Dynamics of Neural Populations
Q113308976	Approximate distance correlation for selecting highly interrelated genes across datasets
Q104483672	Approximating complex musculoskeletal biomechanics using multidimensional autogenerating polynomials
Q35182118	AprioriGWAS, a new pattern mining strategy for detecting genetic variants associated with disease through interaction effects
Q113309446	Are There Rearrangement Hotspots in the Human Genome?
Q30826261	Are current atomistic force fields accurate enough to study proteins in crowded environments?
Q34266040	Are long-range structural correlations behind the aggregration phenomena of polyglutamine diseases?
Q21145321	Are there laws of genome evolution?
Q47384821	Are there physicochemical differences between allosteric and competitive ligands?
Q30837884	Are there rearrangement hotspots in the human genome?
Q112555786	Are transient protein-protein interactions more dispensable?
Q34765254	Are v1 simple cells optimized for visual occlusions? A comparative study
Q101468876	Arioc: High-concurrency short-read alignment on multiple GPUs
Q112688546	Arousal state affects perceptual decision-making by modulating hierarchical sensory processing in a large-scale visual system model
Q92498066	Arrhythmia mechanisms and spontaneous calcium release: Bi-directional coupling between re-entrant and focal excitation
Q55163722	Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago.
Q28539040	Arterial stiffening provides sufficient explanation for primary hypertension
Q34395244	Artificial neural networks trained to detect viral and phage structural proteins
Q36206672	As Simple As Possible, but Not Simpler: Exploring the Fidelity of Coarse-Grained Protein Models for Simulated Force Spectroscopy.
Q113309140	Ascension of Chlamydia is moderated by uterine peristalsis and the neutrophil response to infection
Q27322948	Assembly of Nsp1 nucleoporins provides insight into nuclear pore complex gating
Q28485272	Assembly of the transmembrane domain of E. coli PhoQ histidine kinase: implications for signal transduction from molecular simulations
Q28390924	Assessing Concordance of Drug-Induced Transcriptional Response in Rodent Liver and Cultured Hepatocytes
Q48259847	Assessing an effective undergraduate module teaching applied bioinformatics to biology students.
Q30376276	Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network.
Q30701668	Assessing computational methods for transcription factor target gene identification based on ChIP-seq data
Q33769725	Assessing computational methods of cis-regulatory module prediction
Q28480992	Assessing drug target association using semantic linked data
Q64120567	Assessing intra-lab precision and inter-lab repeatability of outgrowth assays of HIV-1 latent reservoir size
Q92021175	Assessing key decisions for transcriptomic data integration in biochemical networks
Q96616988	Assessing predictors for new post translational modification sites: A case study on hydroxylation
Q113309535	Assessing the Nature of Lipid Raft Membranes
Q21145684	Assessing the accuracy of ancestral protein reconstruction methods
Q113308653	Assessing the best time interval between doses in a two-dose vaccination regimen to reduce the number of deaths in an ongoing epidemic of SARS-CoV-2
Q52591851	Assessing the durability and efficiency of landscape-based strategies to deploy plant resistance to pathogens.
Q113265287	Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics
Q113308517	Assessing the impact of lateral flow testing strategies on within-school SARS-CoV-2 transmission and absences: A modelling study
Q33275288	Assessing the nature of lipid raft membranes
Q97557003	Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data
Q63246485	Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15
Q54974553	Assessing the public health impact of tolerance-based therapies with mathematical models.
Q34295521	Assessing the relative stability of dimer interfaces in g protein-coupled receptors
Q34055223	Assessing vaccination sentiments with online social media: implications for infectious disease dynamics and control
Q55339097	Assessment of ab initio models of protein complexes by molecular dynamics.
Q58753858	Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling
Q92021292	Assessment of the cardiovascular adverse effects of drug-drug interactions through a combined analysis of spontaneous reports and predicted drug-target interactions
Q33576716	Assimilating seizure dynamics
Q28472394	Associating genes and protein complexes with disease via network propagation
Q92251829	Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs
Q53272102	Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification.
Q28474223	Association rate constants of ras-effector interactions are evolutionarily conserved
Q94512079	Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis
Q101558486	Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex
Q28472850	Astrocytes optimize the synaptic transmission of information
Q55246395	Astrocytic Kir4.1 channels and gap junctions account for spontaneous epileptic seizure.
Q33402441	Astrocytic mechanisms explaining neural-activity-induced shrinkage of extraneuronal space
Q35755743	Asymmetric Evolutionary Games
Q27326910	Asymmetric PTEN distribution regulated by spatial heterogeneity in membrane-binding state transitions
Q113308395	Asymmetric and adaptive reward coding via normalized reinforcement learning
Q113308876	Asymmetric and transient properties of reciprocal activity of antagonists during the paw-shake response in the cat
Q28544752	Asymmetric genome organization in an RNA virus revealed via graph-theoretical analysis of tomographic data
Q33573560	Asymmetric switching in a homodimeric ABC transporter: a simulation study
Q35892791	Asymmetrical Damage Partitioning in Bacteria: A Model for the Evolution of Stochasticity, Determinism, and Genetic Assimilation
Q113308814	Asymmetries around the visual field: From retina to cortex to behavior
Q35730867	Asynchronous Rate Chaos in Spiking Neuronal Circuits
Q35814396	At the Edge of Chaos: How Cerebellar Granular Layer Network Dynamics Can Provide the Basis for Temporal Filters
Q60310751	Atlases of cognition with large-scale human brain mapping
Q55093077	Atomic resolution mechanism of ligand binding to a solvent inaccessible cavity in T4 lysozyme.
Q33619201	Atomic-resolution simulations predict a transition state for vesicle fusion defined by contact of a few lipid tails
Q41323711	Atomistic fingerprint of hyaluronan-CD44 binding
Q96121518	Atomistic mechanism of transmembrane helix association
Q27322701	Atomistic picture for the folding pathway of a hybrid-1 type human telomeric DNA G-quadruplex
Q113309087	Atorvastatin-mediated rescue of cancer-related cognitive changes in combined anticancer therapies
Q28555072	Atrial Heterogeneity Generates Re-entrant Substrate during Atrial Fibrillation and Anti-arrhythmic Drug Action: Mechanistic Insights from Canine Atrial Models
Q36400524	Atrial arrhythmogenicity of KCNJ2 mutations in short QT syndrome: Insights from virtual human atria.
Q30946336	Attention increases the temporal precision of conscious perception: verifying the Neural-ST Model
Q35034092	Attention-dependent modulation of cortical taste circuits revealed by Granger causality with signal-dependent noise
Q27333501	Attracting dynamics of frontal cortex ensembles during memory-guided decision-making
Q113308925	Attractive internuclear force drives the collective behavior of nuclear arrays in Drosophila embryos
Q92966902	Atypical structural tendencies among low-complexity domains in the Protein Data Bank proteome
Q113308978	Atypically larger variability of resource allocation accounts for visual working memory deficits in schizophrenia
Q35991190	AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression
Q33357103	Auditory frequency and intensity discrimination explained using a cortical population rate code
Q30830622	Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference
Q93075104	Augmenting subnetwork inference with information extracted from the scientific literature
Q60538867	Authors' Reply
Q60538954	Authors' Reply
Q91603812	Autistic traits influence the strategic diversity of information sampling: Insights from two-stage decision models
Q28481518	AutoClickChem: click chemistry in silico
Q28551247	AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility
Q28475953	Autocatalytic loop, amplification and diffusion: a mathematical and computational model of cell polarization in neural chemotaxis
Q113308753	Autocrine signaling can explain the emergence of Allee effects in cancer cell populations
Q112718575	Autoencoder based local T cell repertoire density can be used to classify samples and T cell receptors
Q35666236	Automated High-Throughput Characterization of Single Neurons by Means of Simplified Spiking Models
Q35783004	Automated Identification of Core Regulatory Genes in Human Gene Regulatory Networks
Q35856867	Automated Learning of Subcellular Variation among Punctate Protein Patterns and a Generative Model of Their Relation to Microtubules
Q30939174	Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans
Q34649464	Automated analysis of a diverse synapse population
Q35840555	Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes
Q46120404	Automated classification of dolphin echolocation click types from the Gulf of Mexico
Q42695700	Automated deconvolution of structured mixtures from heterogeneous tumor genomic data
Q28469275	Automated discovery of functional generality of human gene expression programs
Q113309479	Automated discovery of functional generality of human gene expression programs
Q30749750	Automated discovery of tissue-targeting enhancers and transcription factors from binding motif and gene function data
Q54941715	Automated evaluation of quaternary structures from protein crystals.
Q38655272	Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors
Q91800470	Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics
Q53832413	Automated plant species identification-Trends and future directions.
Q33294652	Automated protein subfamily identification and classification
Q33270507	Automated querying of genome databases
Q27330203	Automated tracking of whiskers in videos of head fixed rodents
Q47163267	Automated visualization of rule-based models
Q35738829	Automatic Adaptation to Fast Input Changes in a Time-Invariant Neural Circuit
Q35818943	Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling
Q38429783	Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
Q33981233	Automatic annotation of spatial expression patterns via sparse Bayesian factor models
Q28472696	Automatic assignment of EC numbers
Q31003282	Automatic design of digital synthetic gene circuits
Q30359637	Automatic extraction of protein point mutations using a graph bigram association.
Q28482131	Automatic filtering and substantiation of drug safety signals
Q28477386	Automatic morphological subtyping reveals new roles of caspases in mitochondrial dynamics
Q113308745	Automatic wound detection and size estimation using deep learning algorithms
Q36381478	Automatically tracking neurons in a moving and deforming brain
Q36100452	Autonomous Optimization of Targeted Stimulation of Neuronal Networks
Q94563422	Autonomous emergence of connectivity assemblies via spike triplet interactions
Q113308917	Autonomous epithelial folding induced by an intracellular mechano–polarity feedback loop
Q33868991	Autonomous targeting of infectious superspreaders using engineered transmissible therapies
Q64272355	Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities
Q113308672	Avalanches during epithelial tissue growth; Uniform Growth and a drosophila eye disc model
Q33632261	Avalanches in a stochastic model of spiking neurons
Q37288266	Average is optimal: an inverted-U relationship between trial-to-trial brain activity and behavioral performance
Q92123594	Avoidance of non-localizable obstacles in echolocating bats: A robotic model
Q33769715	Axial and radial forces of cross-bridges depend on lattice spacing
Q35165329	Axonal noise as a source of synaptic variability
Q33529038	Axonal velocity distributions in neural field equations
Q31036445	B cell activation triggered by the formation of the small receptor cluster: a computational study
Q30976555	BASiCS: Bayesian Analysis of Single-Cell Sequencing Data
Q64068069	BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
Q28660145	BEAST 2: a software platform for Bayesian evolutionary analysis
Q113309163	BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data
Q33422947	BETASCAN: probable beta-amyloids identified by pairwise probabilistic analysis
Q36302542	BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.
Q31054397	BIITE: A Tool to Determine HLA Class II Epitopes from T Cell ELISpot Data
Q64099401	BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Q113308499	BOSO: A novel feature selection algorithm for linear regression with high-dimensional data
Q36377654	BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
Q55407673	Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases.
Q34055255	Bacteria modulate the CD8+ T cell epitope repertoire of host cytosol-exposed proteins to manipulate the host immune response
Q104069295	Bacteria use structural imperfect mimicry to hijack the host interactome
Q21090158	Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples
Q113308739	Bacterial age distribution in soil – Generational gaps in adjacent hot and cold spots
Q64064707	Bacterial surface colonization, preferential attachment and fitness under periodic stress
Q28546654	Bacterial temporal dynamics enable optimal design of antibiotic treatment
Q95845440	Balance between asymmetry and abundance in multi-domain DNA-binding proteins may regulate the kinetics of their binding to DNA
Q64071677	Balance of mechanical forces drives endothelial gap formation and may facilitate cancer and immune-cell extravasation
Q35008761	Balanced excitatory and inhibitory synaptic currents promote efficient coding and metabolic efficiency
Q108792520	Balanced networks under spike-time dependent plasticity
Q31044407	Balanced synaptic input shapes the correlation between neural spike trains
Q34145647	Balancing feed-forward excitation and inhibition via Hebbian inhibitory synaptic plasticity
Q55415624	Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets.
Q33285866	Bang-bang control of feeding: role of hypothalamic and satiety signals
Q27324196	Barcoding T cell calcium response diversity with methods for automated and accurate analysis of cell signals (MAAACS)
Q31160741	Barriers to cooperation aid ideological rigidity and threaten societal collapse
Q27332389	Barriers to diffusion in dendrites and estimation of calcium spread following synaptic inputs
Q98938882	Basal leakage in oscillation: Coupled transcriptional and translational control using feed-forward loops
Q47115115	Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.
Q113308682	Base-resolution prediction of transcription factor binding signals by a deep learning framework
Q35238084	Baseline CD4+ T cell counts correlates with HIV-1 synonymous rate in HLA-B*5701 subjects with different risk of disease progression
Q113309378	Basis profile curve identification to understand electrical stimulation effects in human brain networks
Q50420351	Bat detective-Deep learning tools for bat acoustic signal detection.
Q64104901	Bayes-optimal estimation of overlap between populations of fixed size
Q35833378	Bayesian Estimation of Conditional Independence Graphs Improves Functional Connectivity Estimates
Q36021487	Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties
Q60306642	Bayesian adaptive dual control of deep brain stimulation in a computational model of Parkinson's disease
Q35156827	Bayesian analysis for inference of an emerging epidemic: citrus canker in urban landscapes
Q113309365	Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth
Q111508034	Bayesian calibration, process modeling and uncertainty quantification in biotechnology
Q90568213	Bayesian comparison of explicit and implicit causal inference strategies in multisensory heading perception
Q33940897	Bayesian comparison of neurovascular coupling models using EEG-fMRI.
Q34697786	Bayesian computation emerges in generic cortical microcircuits through spike-timing-dependent plasticity
Q113265280	Bayesian data assimilation for estimating instantaneous reproduction numbers during epidemics: Applications to COVID-19
Q28488592	Bayesian estimation of mixture models with prespecified elements to compare drug resistance in treatment-naïve and experienced tuberculosis cases
Q34888575	Bayesian history matching of complex infectious disease models using emulation: a tutorial and a case study on HIV in Uganda
Q92367951	Bayesian hypothesis testing and experimental design for two-photon imaging data
Q89717644	Bayesian inference and comparison of stochastic transcription elongation models
Q33987357	Bayesian inference for genomic data integration reduces misclassification rate in predicting protein-protein interactions
Q113308665	Bayesian inference of ancestral recombination graphs
Q91089229	Bayesian inference of metabolic kinetics from genome-scale multiomics data
Q91034720	Bayesian inference of neuronal assemblies
Q47565899	Bayesian inference of phylogenetic networks from bi-allelic genetic markers
Q60952323	Bayesian inference of protein conformational ensembles from limited structural data
Q28649953	Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration
Q34574808	Bayesian inference of spatial organizations of chromosomes
Q64104897	Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data
Q33521296	Bayesian integration and non-linear feedback control in a full-body motor task.
Q91629943	Bayesian integrative analysis of epigenomic and transcriptomic data identifies Alzheimer's disease candidate genes and networks
Q97640015	Bayesian modelling of high-throughput sequencing assays with malacoda
Q112298049	Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees
Q59351170	Bayesian phylodynamic inference with complex models
Q92451147	Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration
Q28259572	Bayesian phylogeography finds its roots
Q36272799	Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction
Q30742484	Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data
Q52580593	Bayesian reconstruction of transmission within outbreaks using genomic variants.
Q42697721	Bayesian refinement of protein structures and ensembles against SAXS data using molecular dynamics
Q95284800	Bayesian regression explains how human participants handle parameter uncertainty
Q113309197	Bayesian structural time series for biomedical sensor data: A flexible modeling framework for evaluating interventions
Q42375669	BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions
Q39535895	BeadArray expression analysis using bioconductor.
Q28474495	Beauty is in the eye of the beholder: proteins can recognize binding sites of homologous proteins in more than one way
Q27323088	Behavioral lateralization and optimal route choice in flying budgerigars
Q35224565	Behavioral modeling of human choices reveals dissociable effects of physical effort and temporal delay on reward devaluation.
Q30484495	Behavioral sequence analysis reveals a novel role for beta2* nicotinic receptors in exploration
Q28539832	Behaviors and strategies of bacterial navigation in chemical and nonchemical gradients
Q35661556	Behavioural Contagion Explains Group Cohesion in a Social Crustacean
Q30388077	Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models
Q92150025	Benchmarking network algorithms for contextualizing genes of interest
Q93073859	Benchmarking network propagation methods for disease gene identification
Q111894345	Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets
Q113309333	Benchmarking of tools for axon length measurement in individually-labeled projection neurons
Q33798071	Benchmarking ontologies: bigger or better?
Q95846131	Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system
Q64103490	Bet-hedging strategies in expanding populations
Q113309010	Better tired than lost: Turtle ant trail networks favor coherence over short edges
Q94512363	Better together: Elements of successful scientific software development in a distributed collaborative community
Q92802250	Between-tumor and within-tumor heterogeneity in invasive potential
Q33563144	Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification
Q64947503	Beyond Bouma's window: How to explain global aspects of crowding?
Q35053003	Beyond GLMs: a generative mixture modeling approach to neural system identification
Q112285387	Beyond advertising: New infrastructures for publishing integrated research objects
Q92039311	Beyond core object recognition: Recurrent processes account for object recognition under occlusion
Q34314850	Beyond muscles stiffness: importance of state-estimation to account for very fast motor corrections
Q97650256	Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities
Q34145629	Beyond statistical significance: implications of network structure on neuronal activity
Q30381459	Beyond the E-Value: Stratified Statistics for Protein Domain Prediction.
Q36217511	Beyond the Hypercube: Evolutionary Accessibility of Fitness Landscapes with Realistic Mutational Networks
Q30010158	Beyond the binding site: the role of the β₂-β₃ loop and extra-domain structures in PDZ domains
Q113309265	Beyond the chemical master equation: Stochastic chemical kinetics coupled with auxiliary processes
Q53823201	Bi-stability in cooperative transport by ants in the presence of obstacles.
Q31171777	BiP clustering facilitates protein folding in the endoplasmic reticulum
Q113308764	Bias-free estimation of information content in temporally sparse neuronal activity
Q30395924	Biases in Visual, Auditory, and Audiovisual Perception of Space
Q34758147	Biases in the experimental annotations of protein function and their effect on our understanding of protein function space
Q35120123	Bidirectional control of absence seizures by the basal ganglia: a computational evidence
Q35529608	Bilinearity in spatiotemporal integration of synaptic inputs
Q31047841	BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data
Q100732630	BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management
Q113309506	Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
Q35905559	Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach
Q113308927	Binding free energy decomposition and multiple unbinding paths of buried ligands in a PreQ1 riboswitch
Q34005244	Binding free energy landscape of domain-peptide interactions
Q28477089	Binding leverage as a molecular basis for allosteric regulation
Q33364665	Binding of DNA-bending non-histone proteins destabilizes regular 30-nm chromatin structure
Q34558005	Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics
Q60050728	Binding of the general anesthetic sevoflurane to ion channels
Q34426339	Binding of two intrinsically disordered peptides to a multi-specific protein: a combined Monte Carlo and molecular dynamics study
Q34945246	Binding polymorphism in the DNA bound state of the Pdx1 homeodomain
Q33284530	Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites
Q33327692	Binding-induced folding of a natively unstructured transcription factor.
Q112574314	Binding-induced functional-domain motions in the Argonaute characterized by adaptive advanced sampling
Q102147784	BioAFMviewer: An interactive interface for simulated AFM scanning of biomolecular structures and dynamics
Q112283391	BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts
Q93178919	BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale
Q64116706	BioJava 5: A community driven open-source bioinformatics library
Q33455542	BioLINK special interest group session on the future of scientific publishing
Q30002308	BioStar: An Online Question & Answer Resource for the Bioinformatics Community
Q112555801	Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs
Q53830438	Biobeam-Multiplexed wave-optical simulations of light-sheet microscopy.
Q28535345	Biochemical competition makes fatty-acid β-oxidation vulnerable to substrate overload
Q21092580	Biocurators: contributors to the world of science
Q36319598	Bioenergetics-based modeling of Plasmodium falciparum metabolism reveals its essential genes, nutritional requirements, and thermodynamic bottlenecks.
Q28550016	Biofilm Formation Mechanisms of Pseudomonas aeruginosa Predicted via Genome-Scale Kinetic Models of Bacterial Metabolism
Q54233273	Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome.
Q92802178	Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma
Q28706281	Bioinformatics and computational biology in Poland
Q64243618	Bioinformatics calls the school: Use of smartphones to introduce Python for bioinformatics in high schools
Q24810391	Bioinformatics curriculum guidelines: toward a definition of core competencies
Q17489035	Bioinformatics education--perspectives and challenges
Q34499309	Bioinformatics for the Human Microbiome Project
Q21145697	Bioinformatics for whole-genome shotgun sequencing of microbial communities
Q34778444	Bioinformatics goes to school--new avenues for teaching contemporary biology
Q35778403	Bioinformatics in Africa: The Rise of Ghana?
Q33330859	Bioinformatics in China: a personal perspective
Q90076569	Bioinformatics in Jordan: Status, challenges, and future directions
Q30397296	Bioinformatics in Malaysia: hope, initiative, effort, reality, and challenges
Q113309083	Bioinformatics in Sudan: Status and challenges case study: The National University-Sudan
Q28727218	Bioinformatics meets user-centred design: a perspective
Q28660187	Bioinformatics projects supporting life-sciences learning in high schools
Q113308663	Biological action at a distance: Correlated pattern formation in adjacent tessellation domains without communication
Q103743797	Biological network growth in complex environments: A computational framework
Q103812409	Biologically-informed neural networks guide mechanistic modeling from sparse experimental data
Q28486273	Biomarker discovery by sparse canonical correlation analysis of complex clinical phenotypes of tuberculosis and malaria
Q36298317	Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells.
Q34549449	BiomeNet: a Bayesian model for inference of metabolic divergence among microbial communities
Q112686223	Biomedical Data Commons (BMDC) prioritizes B-lymphocyte non-coding genetic variants in Type 1 Diabetes
Q34013580	Biomedical cloud computing with Amazon Web Services
Q21092567	Biomedical discovery acceleration, with applications to craniofacial development
Q33521310	Biomedical text mining and its applications
Q34611062	Biomolecular events in cancer revealed by attractor metagenes
Q36023918	Biophysical Network Modelling of the dLGN Circuit: Different Effects of Triadic and Axonal Inhibition on Visual Responses of Relay Cells
Q48105788	Biophysical attributes that affect CaMKII activation deduced with a novel spatial stochastic simulation approach
Q33375020	Biophysical basis for three distinct dynamical mechanisms of action potential initiation
Q35204371	Biophysical fitness landscapes for transcription factor binding sites
Q48150032	Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells
Q30493624	Biophysical parameters modification could overcome essential hearing gaps
Q28660230	Biophysical properties of intrinsically disordered p130Cas substrate domain--implication in mechanosensing
Q100483429	Biophysically detailed mathematical models of multiscale cardiac active mechanics
Q92121492	Biophysics and population size constrains speciation in an evolutionary model of developmental system drift
Q126510561	Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources
Q33727965	Biosensor approach to psychopathology classification
Q28472546	Biosynthetic potentials of metabolites and their hierarchical organization
Q36130077	Bipartite Community Structure of eQTLs
Q33301005	Bistability and oscillations in the Huang-Ferrell model of MAPK signaling
Q113309460	Bistability and oscillations in the Huang-Ferrell model of MAPK signaling
Q28475785	Bistability in apoptosis by receptor clustering
Q113309226	Bistability in fatty-acid oxidation resulting from substrate inhibition
Q33521290	Bistability of mitochondrial respiration underlies paradoxical reactive oxygen species generation induced by anoxia
Q34013576	Bistability versus bimodal distributions in gene regulatory processes from population balance
Q42685087	Bistability, non-ergodicity, and inhibition in pairwise maximum-entropy models
Q28538303	Bistable dynamics underlying excitability of ion homeostasis in neuron models
Q27320789	Bistable forespore engulfment in Bacillus subtilis by a zipper mechanism in absence of the cell wall
Q36300610	Bistable front dynamics in a contractile medium: Travelling wave fronts and cortical advection define stable zones of RhoA signaling at epithelial adherens junctions
Q33480951	Bistable perception modeled as competing stochastic integrations at two levels
Q30984204	Bistable, irregular firing and population oscillations in a modular attractor memory network
Q52717459	Black-boxing and cause-effect power.
Q113308646	Blind demixing methods for recovering dense neuronal morphology from barcode imaging data
Q35221131	Blind predictions of DNA and RNA tweezers experiments with force and torque
Q28477330	Blockade of neuronal α7-nAChR by α-conotoxin ImI explained by computational scanning and energy calculations
Q112281890	Blood and brain gene expression signatures of chronic intermittent ethanol consumption in mice
Q41186794	Blood vessel tortuosity selects against evolution of aggressive tumor cells in confined tissue environments: A modeling approach
Q33526237	Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local
Q33987379	Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses
Q34192796	Bonsai trees in your head: how the pavlovian system sculpts goal-directed choices by pruning decision trees
Q36412313	Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome.
Q64090129	Boolean model of growth signaling, cell cycle and apoptosis predicts the molecular mechanism of aberrant cell cycle progression driven by hyperactive PI3K
Q33269156	Both ligand- and cell-specific parameters control ligand agonism in a kinetic model of g protein-coupled receptor signaling
Q33286414	Bottleneck genes and community structure in the cell cycle network of S. pombe
Q38646714	Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network
Q47567431	Bowhead: Bayesian modelling of cell velocity during concerted cell migration.
Q28552461	Brain Connectivity Dissociates Responsiveness from Drug Exposure during Propofol-Induced Transitions of Consciousness
Q103744052	Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
Q28754376	Brain anatomical network and intelligence
Q31171652	Brain and behavior in decision-making
Q96137311	Brain dynamics for confidence-weighted learning
Q35539869	Brain network adaptability across task states.
Q33542485	Brain network eigenmodes provide a robust and compact representation of the structural connectome in health and disease
Q24635085	Brain rhythms reveal a hierarchical network organization
Q125343710	Brain signal predictions from multi-scale networks using a linearized framework
Q108898695	Brain-inspired model for early vocal learning and correspondence matching using free-energy optimization
Q96964051	Brain-optimized extraction of complex sound features that drive continuous auditory perception
Q52642736	Brain-state invariant thalamo-cortical coordination revealed by non-linear encoders.
Q92658735	BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Q28480872	Branch mode selection during early lung development
Q33751599	Breakdown of local information processing may underlie isoflurane anesthesia effects
Q102330773	Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
Q35054955	Breaking the ice and forging links: the importance of socializing in research
Q28552161	Bridging Mechanistic and Phenomenological Models of Complex Biological Systems
Q27317289	Bridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained Models
Q113309270	Bridging cell-scale simulations and radiologic images to explain short-time intratumoral oxygen fluctuations
Q104267157	Bridging from single to collective cell migration: A review of models and links to experiments
Q55260238	Bridging structure and function: A model of sequence learning and prediction in primary visual cortex.
Q92983680	Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa
Q113535216	Bridging the gap: Using reservoir ecology and human serosurveys to estimate Lassa virus spillover in West Africa
Q33967936	Bridging the resolution gap in structural modeling of 3D genome organization
Q37332585	Brief overview of bioinformatics activities in Singapore
Q21563516	Brightness and darkness as perceptual dimensions
Q113308855	Bringing bioinformatics to schools with the 4273pi project
Q34325465	Bringing molecules back into molecular evolution
Q35823144	Broad CTL Response in Early HIV Infection Drives Multiple Concurrent CTL Escapes
Q21145366	Broadband criticality of human brain network synchronization
Q27333529	Brownian dynamics simulation of nucleocytoplasmic transport: a coarse-grained model for the functional state of the nuclear pore complex
Q35613946	Bud-Localization of CLB2 mRNA Can Constitute a Growth Rate Dependent Daughter Sizer
Q113309466	Buffering Mechanisms in Aging: A systems approach towards uncovering the genetic component of aging
Q99707412	Buffering and total calcium levels determine the presence of oscillatory regimes in cardiac cells
Q33296879	Buffering mechanisms in aging: a systems approach toward uncovering the genetic component of aging
Q64082020	Building a mechanistic mathematical model of hepatitis C virus entry
Q113309072	Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention
Q28475789	Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts
Q91089283	Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps
Q31151095	Building the future of bioinformatics through student-facilitated conferencing
Q98775153	Buildup and bistability in auditory streaming as an evidence accumulation process with saturation
Q39830059	Bulk Genotyping of Biopsies Can Create Spurious Evidence for Hetereogeneity in Mutation Content
Q113308956	Burst control: Synaptic conditions for burst generation in cortical layer 5 pyramidal neurons
Q33521298	Burst-time-dependent plasticity robustly guides ON/OFF segregation in the lateral geniculate nucleus
Q104468266	Bursting in cerebellar stellate cells induced by pharmacological agents: Non-sequential spike adding
Q35224919	Bursts and heavy tails in temporal and sequential dynamics of foraging decisions
Q34649442	Bursts of vertex activation and epidemics in evolving networks
Q41935388	C-reactive protein upregulates the whole blood expression of CD59 - an integrative analysis
Q33869027	CAERUS: predicting CAncER oUtcomeS using relationship between protein structural information, protein networks, gene expression data, and mutation data
Q113309056	CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation
Q35034101	CAPE: an R package for combined analysis of pleiotropy and epistasis
Q30366245	CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.
Q28484476	CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures
Q90356427	CAncer bioMarker Prediction Pipeline (CAMPP)-A standardized framework for the analysis of quantitative biological data
Q113308560	CBEA: Competitive balances for taxonomic enrichment analysis
Q91603738	CBNA: A control theory based method for identifying coding and non-coding cancer drivers
Q35216098	CCAST: a model-based gating strategy to isolate homogeneous subpopulations in a heterogeneous population of single cells
Q91603787	CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data
Q30830653	CGBayesNets: conditional Gaussian Bayesian network learning and inference with mixed discrete and continuous data
Q104558034	CHOmics: A web-based tool for multi-omics data analysis and interactive visualization in CHO cell lines
Q41282832	CLIC, a tool for expanding biological pathways based on co-expression across thousands of datasets
Q94046552	CNEr: A toolkit for exploring extreme noncoding conservation
Q35995950	CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing.
Q89430395	COBRAme: A computational framework for genome-scale models of metabolism and gene expression
Q106714674	CODON-Software to manual curation of prokaryotic genomes
Q112646926	COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions
Q112639362	COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
Q112610548	COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission
Q112609840	COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity
Q113308796	CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach
Q114967142	CRIMSON: An open-source software framework for cardiovascular integrated modelling and simulation
Q112725488	CRISPRbuilder-TB: "CRISPR-builder for tuberculosis". Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA
Q33340982	CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing
Q113308904	CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure
Q112646908	CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models
Q28551212	Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes
Q33981254	Cadherin-dependent cell morphology in an epithelium: constructing a quantitative dynamical model
Q57720829	Calcium imaging and dynamic causal modelling reveal brain-wide changes in effective connectivity and synaptic dynamics during epileptic seizures
Q113308570	Calcium modeling of spine apparatus-containing human dendritic spines demonstrates an “all-or-nothing” communication switch between the spine head and dendrite
Q61450765	Calcium phosphate precipitation inhibits mitochondrial energy metabolism
Q27334750	Calcium signals driven by single channel noise
Q27327264	Calcium wave propagation in networks of endothelial cells: model-based theoretical and experimental study
Q115515266	Calcium-vesicles perform active diffusion in the sea urchin embryo during larval biomineralization
Q33519512	Calculating evolutionary dynamics in structured populations
Q112721371	Calculation of the force field required for nucleus deformation during cell migration through constrictions
Q125935061	Calibrating spatiotemporal models of microbial communities to microscopy data: A review
Q94553091	Calibration of individual-based models to epidemiological data: A systematic review
Q113309589	Can Transgenic Maize Affect Soil Microbial Communities?
Q55281031	Can a time varying external drive give rise to apparent criticality in neural systems?
Q21145666	Can influenza epidemics be prevented by voluntary vaccination?
Q112583421	Can molecular dynamics simulations improve the structural accuracy and virtual screening performance of GPCR models?
Q33495547	Can molecular motors drive distance measurements in injured neurons?
Q33408762	Can monkeys choose optimally when faced with noisy stimuli and unequal rewards?
Q28469050	Can transgenic maize affect soil microbial communities?
Q28474898	Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors
Q101221545	Canard analysis reveals why a large Ca2+ window current promotes early afterdepolarizations in cardiac myocytes
Q101468946	Cancer classification based on chromatin accessibility profiles with deep adversarial learning model
Q91373384	Cancer recurrence times from a branching process model
Q90014360	CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer
Q90241588	Cancerin: A computational pipeline to infer cancer-associated ceRNA interaction networks
Q38689368	Cannabinoids disrupt memory encoding by functionally isolating hippocampal CA1 from CA3.
Q27316350	Canonical Cortical Circuit Model Explains Rivalry, Intermittent Rivalry, and Rivalry Memory
Q34350835	Canonical correlation analysis for gene-based pleiotropy discovery
Q35880539	Capabilities and Limitations of Tissue Size Control through Passive Mechanical Forces.
Q97640071	Capsule networks as recurrent models of grouping and segmentation
Q99568702	Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data
Q112688009	Capturing the songs of mice with an improved detection and classification method for ultrasonic vocalizations (BootSnap)
Q98508207	Cardiac and renal function interactions in heart failure with reduced ejection fraction: A mathematical modeling analysis
Q47194476	Cardinal features of involuntary force variability can arise from the closed-loop control of viscoelastic afferented muscles.
Q113238599	Cargo surface fluidity can reduce inter-motor mechanical interference, promote load-sharing and enhance processivity in teams of molecular motors
Q42050933	Catalysis of protein folding by chaperones accelerates evolutionary dynamics in adapting cell populations
Q36177113	Catecholaminergic Regulation of Learning Rate in a Dynamic Environment
Q21563482	Categorial compositionality II: universal constructions and a general theory of (quasi-)systematicity in human cognition
Q21092525	Categorial compositionality: a category theory explanation for the systematicity of human cognition
Q90694131	Categorical encoding of decision variables in orbitofrontal cortex
Q114054795	Cattle transport network predicts endemic and epidemic foot-and-mouth disease risk on farms in Turkey
Q35954012	Causal Inference for Spatial Constancy across Saccades
Q28547556	Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFκB Signaling in Hepatocellular Carcinoma
Q112689583	Causal inference regulates audiovisual spatial recalibration via its influence on audiovisual perception
Q28477388	Causal modeling using network ensemble simulations of genetic and gene expression data predicts genes involved in rheumatoid arthritis
Q112284379	Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery
Q31129292	Causes and consequences of hyperexcitation in central clock neurons
Q33384132	Cavities and atomic packing in protein structures and interfaces
Q27321628	CeleST: computer vision software for quantitative analysis of C. elegans swim behavior reveals novel features of locomotion
Q35935812	Cell Assembly Dynamics of Sparsely-Connected Inhibitory Networks: A Simple Model for the Collective Activity of Striatal Projection Neurons
Q27317341	Cell Invasion Dynamics into a Three Dimensional Extracellular Matrix Fibre Network
Q113309518	Cell Size at S Phase Initiation: an Emergent Propery of the G1/S Network
Q30836858	Cell Sorting and Noise-Induced Cell Plasticity Coordinate to Sharpen Boundaries between Gene Expression Domains
Q52320391	Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms.
Q34461616	Cell cycle control by a minimal Cdk network.
Q46096783	Cell cycle time series gene expression data encoded as cyclic attractors in Hopfield systems.
Q35596638	Cell fate reprogramming by control of intracellular network dynamics
Q64272257	Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos
Q33381581	Cell groups reveal structure of stimulus space
Q27324634	Cell patterns emerge from coupled chemical and physical fields with cell proliferation dynamics: the Arabidopsis thaliana root as a study system
Q27331979	Cell shape dynamics: from waves to migration
Q98654952	Cell signaling model for arterial mechanobiology
Q33282044	Cell size at S phase initiation: an emergent property of the G1/S network
Q113309498	Cell surface receptors for signal transduction and ligand transport - a design principles study
Q33286413	Cell surface receptors for signal transduction and ligand transport: a design principles study.
Q35295223	Cell type specific alterations in interchromosomal networks across the cell cycle
Q113308569	Cell type-specific mechanisms of information transfer in data-driven biophysical models of hippocampal CA3 principal neurons
Q27323961	Cell-based multi-parametric model of cleft progression during submandibular salivary gland branching morphogenesis
Q34916566	Cell-cycle dependence of transcription dominates noise in gene expression
Q27333629	Cell-sorting at the A/P boundary in the Drosophila wing primordium: a computational model to consolidate observed non-local effects of Hh signaling
Q35557637	Cell-specific cardiac electrophysiology models
Q113308511	CellDynaMo–stochastic reaction-diffusion-dynamics model: Application to search-and-capture process of mitotic spindle assembly
Q27316190	Cellular Architecture Regulates Collective Calcium Signaling and Cell Contractility
Q27316551	Cellular Growth Arrest and Persistence from Enzyme Saturation
Q39639320	Cellular Interrogation: Exploiting Cell-to-Cell Variability to Discriminate Regulatory Mechanisms in Oscillatory Signalling.
Q35008751	Cellular adaptation facilitates sparse and reliable coding in sensory pathways
Q61810621	Cellular determinants of metabolite concentration ranges
Q33916625	Cellularly-driven differences in network synchronization propensity are differentially modulated by firing frequency
Q104618743	Cerebellar Golgi cell models predict dendritic processing and mechanisms of synaptic plasticity
Q35858843	Cerebellar Nuclear Neurons Use Time and Rate Coding to Transmit Purkinje Neuron Pauses
Q33304211	Cerebellar motor learning: when is cortical plasticity not enough?
Q113309275	ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements
Q64067224	ChIPulate: A comprehensive ChIP-seq simulation pipeline
Q60309397	Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci
Q34262993	Challenges and new approaches to proving the existence of muscle synergies of neural origin
Q28472135	Challenges predicting ligand-receptor interactions of promiscuous proteins: the nuclear receptor PXR
Q31036350	Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning
Q60459191	Change, stability, and instability in the Pavlovian guidance of behaviour from adolescence to young adulthood
Q34186924	Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged
Q27318620	Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion
Q27332352	Changes in dynamics upon oligomerization regulate substrate binding and allostery in amino acid kinase family members
Q64091717	Changes in morphogen kinetics and pollen grain size are potential mechanisms of aberrant pollen aperture patterning in previously observed and novel mutants of Arabidopsis thaliana
Q55453634	Changes in parasite traits, rather than intensity, affect the dynamics of infection under external perturbation.
Q33951925	Changes of mind in an attractor network of decision-making
Q89505411	Changes-of-mind in the absence of new post-decision evidence
Q113309639	Changing Cellular Location of CheZ Predicted by Molecular Simulations
Q33242803	Changing cellular location of CheZ predicted by molecular simulations
Q113308596	Chaotic and stochastic dynamics of epileptiform-like activities in sclerotic hippocampus resected from patients with pharmacoresistant epilepsy
Q34539687	Chapter 10: Mining genome-wide genetic markers
Q21145310	Chapter 11: Genome-wide association studies
Q34539646	Chapter 12: Human microbiome analysis
Q34539676	Chapter 13: Mining electronic health records in the genomics era.
Q21145309	Chapter 14: Cancer genome analysis
Q34697737	Chapter 15: disease gene prioritization
Q34697800	Chapter 16: text mining for translational bioinformatics
Q28486894	Chapter 17: bioimage informatics for systems pharmacology
Q28710177	Chapter 1: Biomedical knowledge integration
Q30585186	Chapter 2: Data-driven view of disease biology
Q28484584	Chapter 3: Small molecules and disease
Q34539656	Chapter 4: Protein interactions and disease
Q34539662	Chapter 5: Network biology approach to complex diseases.
Q34539666	Chapter 6: Structural variation and medical genomics
Q21563496	Chapter 7: Pharmacogenomics
Q34539723	Chapter 8: Biological knowledge assembly and interpretation
Q34539681	Chapter 9: Analyses using disease ontologies
Q92697432	Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets
Q56888609	Characterising seasonal influenza epidemiology using primary care surveillance data
Q34961670	Characteristic effects of stochastic oscillatory forcing on neural firing: analytical theory and comparison to paddlefish electroreceptor data
Q64130957	Characteristics of measles epidemics in China (1951-2004) and implications for elimination: A case study of three key locations
Q113309533	Characterization and Identification of MicroRNA Promoters in Four Model Species
Q112700222	Characterization and clustering of kinase isoform expression in metastatic melanoma
Q21092578	Characterization and identification of microRNA core promoters in four model species
Q27320710	Characterization of K-complexes and slow wave activity in a neural mass model
Q28553736	Characterization of Promiscuous Binding of Phosphor Ligands to Breast-Cancer-Gene 1 (BRCA1) C-Terminal (BRCT): Molecular Dynamics, Free Energy, Entropy and Inhibitor Design
Q113309462	Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
Q28474249	Characterization of growth and metabolism of the haloalkaliphile Natronomonas pharaonis
Q113308702	Characterization of intrinsically disordered regions in proteins informed by human genetic diversity
Q33302935	Characterization of protein hubs by inferring interacting motifs from protein interactions
Q112577828	Characterization of the NiRAN domain from RNA-dependent RNA polymerase provides insights into a potential therapeutic target against SARS-CoV-2
Q90076529	Characterizing and dissociating multiple time-varying modulatory computations influencing neuronal activity
Q28536749	Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization
Q100310665	Characterizing chromatin folding coordinate and landscape with deep learning
Q113238605	Characterizing collaborative transcription regulation with a graph-based deep learning approach
Q28472852	Characterizing dynamic changes in the human blood transcriptional network
Q113308800	Characterizing non-exponential growth and bimodal cell size distributions in fission yeast: An analytical approach
Q35276881	Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen
Q47117353	Characterizing steady states of genome-scale metabolic networks in continuous cell cultures
Q113308422	Characterizing superspreading potential of infectious disease: Decomposition of individual transmissibility
Q30434543	Characterizing the impact of category uncertainty on human auditory categorization behavior
Q33682086	Characterizing the metabolism of Dehalococcoides with a constraint-based model
Q28487445	Characterizing the relationship between steady state and response using analytical expressions for the steady states of mass action models
Q35364618	Characterizing the transmission potential of zoonotic infections from minor outbreaks
Q33565505	Charge as a selection criterion for translocation through the nuclear pore complex
Q28480411	Charge profile analysis reveals that activation of pro-apoptotic regulators Bax and Bak relies on charge transfer mediated allosteric regulation
Q34845122	Charles Bonnet syndrome: evidence for a generative model in the cortex?
Q92562013	Charting pathways to climate change mitigation in a coupled socio-climate model
Q27324925	Chaste: an open source C++ library for computational physiology and biology
Q36331912	Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling
Q28477485	Chemical basis of metabolic network organization
Q64090139	Chemical features mining provides new descriptive structure-odor relationships
Q104747658	Chemical graph generators
Q28541837	Chemical, target, and bioactive properties of allosteric modulation
Q33347901	Chemically based mathematical model for development of cerebral cortical folding patterns
Q33584492	Cheminformatics-aided discovery of small-molecule Protein-Protein Interaction (PPI) dual inhibitors of Tumor Necrosis Factor (TNF) and Receptor Activator of NF-κB Ligand (RANKL).
Q61453596	Chemogenomic model identifies synergistic drug combinations robust to the pathogen microenvironment
Q36382861	Chemomechanical regulation of myosin Ic cross-bridges: Deducing the elastic properties of an ensemble from single-molecule mechanisms
Q113308401	Chemophoresis engine: A general mechanism of ATPase-driven cargo transport
Q27329452	Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens
Q28473989	Chemotactic response and adaptation dynamics in Escherichia coli
Q113309478	Chemotaxis Receptor Complexes: From Signaling to Assembly
Q28471934	Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation
Q113309417	Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation
Q92123512	Chemotaxis in external fields: Simulations for active magnetic biological matter
Q28469270	Chemotaxis receptor complexes: from signaling to assembly
Q35586850	Chemotaxis when bacteria remember: drift versus diffusion
Q113309028	Chemotherapy-induced cachexia and model-informed dosing to preserve lean mass in cancer treatment
Q113308742	Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus
Q60932172	Chirality provides a direct fitness advantage and facilitates intermixing in cellular aggregates
Q95846161	Chloride dynamics alter the input-output properties of neurons
Q112689933	Choice history effects in mice and humans improve reward harvesting efficiency
Q28476469	Cholera- and anthrax-like toxins are among several new ADP-ribosyltransferases
Q100457187	Cholesterol binding to the sterol-sensing region of Niemann Pick C1 protein confines dynamics of its N-terminal domain
Q47160068	Choose, rate or squeeze: Comparison of economic value functions elicited by different behavioral tasks
Q33377433	ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome
Q27320948	Chromatin loops as allosteric modulators of enhancer-promoter interactions
Q58611949	Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA
Q89629210	Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq
Q55206418	ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.
Q27338475	Chromophore protonation state controls photoswitching of the fluoroprotein asFP595
Q112608479	Chromosomal neighbourhoods allow identification of organ specific changes in gene expression
Q33750217	Chromosome driven spatial patterning of proteins in bacteria
Q27335201	Circadian KaiC phosphorylation: a multi-layer network
Q25255989	Circadian clocks are resounding in peripheral tissues
Q33369860	Circadian phase resetting via single and multiple control targets
Q113309367	Circadian rhythm shows potential for mRNA efficiency and self-organized division of labor in multinucleate cells
Q28469030	Circadian rhythmicity by autocatalysis
Q113309606	Circadian rhythmicity by autocatalysis
Q96577549	Circuits with broken fibration symmetries perform core logic computations in biological networks
Q5121672	Circular permutation in proteins
Q35909861	ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections
Q27321175	Classical mathematical models for description and prediction of experimental tumor growth
Q113308773	Classical mathematical models for prediction of response to chemotherapy and immunotherapy
Q36310402	Classification and adaptive behavior prediction of children with autism spectrum disorder based upon multivariate data analysis of markers of oxidative stress and DNA methylation.
Q38374528	Classification and analysis of a large collection of in vivo bioassay descriptions
Q104574078	Classification and phylogeny for the annotation of novel eukaryotic GNAT acetyltransferases
Q113308827	Classification of bursting patterns: A tale of two ducks
Q99707403	Classification of estrogenic compounds by coupling high content analysis and machine learning algorithms
Q55433575	Classification of red blood cell shapes in flow using outlier tolerant machine learning.
Q30371533	Classifying RNA-binding proteins based on electrostatic properties
Q50421162	Classifying dynamic transitions in high dimensional neural mass models: A random forest approach.
Q96617093	Classifying sex and strain from mouse ultrasonic vocalizations using deep learning
Q34699655	Cleavage entropy as quantitative measure of protease specificity
Q91806186	Climbing Escher's stairs: A way to approximate stability landscapes in multidimensional systems
Q34524589	Climbing fiber burst size and olivary sub-threshold oscillations in a network setting
Q42919072	Clique of functional hubs orchestrates population bursts in developmentally regulated neural networks
Q47113293	Clonal dominance and transplantation dynamics in hematopoietic stem cell compartments
Q64086541	Clonal hematopoiesis of indeterminate potential and its impact on patient trajectories after stem cell transplantation
Q35559913	ClonalFrameML: efficient inference of recombination in whole bacterial genomes
Q64912631	Close proximity interactions support transmission of ESBL-K. pneumoniae but not ESBL-E. coli in healthcare settings.
Q90123405	Close spatial arrangement of mutants favors and disfavors fixation
Q52660783	Closely related, yet unique: Distinct homo- and heterodimerization patterns of G protein coupled chemokine receptors and their fine-tuning by cholesterol.
Q55386182	Cloud computing applications for biomedical science: A perspective.
Q113309339	Cluster size distribution of cells disseminating from a primary tumor
Q35880462	Clustered Desynchronization from High-Frequency Deep Brain Stimulation
Q48235464	Clustering gene expression time series data using an infinite Gaussian process mixture model
Q91396066	Clustering-independent analysis of genomic data using spectral simplicial theory
Q42697110	Clusternomics: Integrative context-dependent clustering for heterogeneous datasets
Q36278411	Co-emergence of multi-scale cortical activities of irregular firing, oscillations and avalanches achieves cost-efficient information capacity
Q58758637	Co-evolution networks of HIV/HCV are modular with direct association to structure and function
Q35112664	Co-evolutionary dynamics of collective action with signaling for a quorum
Q34916486	Co-expression profiling of autism genes in the mouse brain
Q96693361	Co-localization and confinement of ecto-nucleotidases modulate extracellular adenosine nucleotide distributions
Q33688357	Co-occurring protein phosphorylation are functionally associated
Q28553236	Co-operation between Polymerases and Nucleotide Synthetases in the RNA World
Q33316819	Co-regulation of metabolic genes is better explained by flux coupling than by network distance
Q64097210	CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis
Q113308880	CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data
Q28488153	Coalescent tree imbalance and a simple test for selective sweeps based on microsatellite variation
Q35886561	Coarse-Grained Simulations of Topology-Dependent Mechanisms of Protein Unfolding and Translocation Mediated by ClpY ATPase Nanomachines
Q27323236	Coarse-grained molecular simulation of epidermal growth factor receptor protein tyrosine kinase multi-site self-phosphorylation
Q27334362	Coding "what" and "when" in the Archer fish retina
Q90970610	Coding Locations Relative to One or Many Landmarks in Childhood
Q34440608	Coding and decoding with adapting neurons: a population approach to the peri-stimulus time histogram
Q34341314	Coding conspecific identity and motion in the electric sense
Q33641342	Coding efficiency of fly motion processing is set by firing rate, not firing precision
Q89695504	Coding with transient trajectories in recurrent neural networks
Q33242799	Codon usage domains over bacterial chromosomes
Q33680623	CodonTest: modeling amino acid substitution preferences in coding sequences
Q28552871	Coenzyme Q Biosynthesis: Evidence for a Substrate Access Channel in the FAD-Dependent Monooxygenase Coq6
Q36264867	Coevolutionary dynamics of phenotypic diversity and contingent cooperation
Q60310753	Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs
Q30473736	Coexistence of lateral and co-tuned inhibitory configurations in cortical networks
Q60907120	Coherency of circadian rhythms in the SCN is governed by the interplay of two coupling factors
Q27316923	Coherent Motion of Monolayer Sheets under Confinement and Its Pathological Implications
Q60957356	Coherent chaos in a recurrent neural network with structured connectivity
Q30410732	Coherent conformational degrees of freedom as a structural basis for allosteric communication
Q28474526	Cohesive versus flexible evolution of functional modules in eukaryotes
Q27322205	Coiled-coil proteins facilitated the functional expansion of the centrosome
Q113309433	Coincidence Detection of Place and Temporal Context in a Network Model of Spiking Hippocampal Neurons
Q27339221	Coincidence detection of place and temporal context in a network model of spiking hippocampal neurons
Q92802062	Collaboration leads to cooperation on sparse networks
Q27316032	Collective Signal Processing in Cluster Chemotaxis: Roles of Adaptation, Amplification, and Co-attraction in Collective Guidance
Q34085607	Collective animal behavior from Bayesian estimation and probability matching
Q27321671	Collective behaviour without collective order in wild swarms of midges
Q27325437	Collective cell motion in an epithelial sheet can be quantitatively described by a stochastic interacting particle model
Q28481742	Collective dynamics differentiates functional divergence in protein evolution
Q21090157	Collective dynamics underlying allosteric transitions in hemoglobin
Q89759189	Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network
Q27321354	Collective learning and optimal consensus decisions in social animal groups
Q113238617	Collective predator evasion: Putting the criticality hypothesis to the test
Q27325705	Collective states, multistability and transitional behavior in schooling fish
Q34649568	Colocalization of coregulated genes: a steered molecular dynamics study of human chromosome 19.
Q33954331	Colocalization of protein kinase A with adenylyl cyclase enhances protein kinase A activity during induction of long-lasting long-term-potentiation
Q36064743	Colony Expansion of Socially Motile Myxococcus xanthus Cells Is Driven by Growth, Motility, and Exopolysaccharide Production.
Q92416624	Colony entropy-Allocation of goods in ant colonies
Q90797135	Color improves edge classification in human vision
Q113309260	Combination and competition between path integration and landmark navigation in the estimation of heading direction
Q33879498	Combination therapeutics of Nilotinib and radiation in acute lymphoblastic leukemia as an effective method against drug-resistance
Q110894727	Combination treatment optimization using a pan-cancer pathway model
Q90694106	Combinations of low-level and high-level neural processes account for distinct patterns of context-dependent choice
Q28478053	Combinations of protein-chemical complex structures reveal new targets for established drugs
Q31044397	Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development
Q28533671	Combinatorial clustering of residue position subsets predicts inhibitor affinity across the human kinome
Q28474344	Combinatorial gene regulation using auto-regulation
Q113746494	Combinatorial mathematical modelling approaches to interrogate rear retraction dynamics in 3D cell migration
Q39030399	Combinatorial modeling of chromatin features quantitatively predicts DNA replication timing in Drosophila
Q24811488	Combinatorial pattern discovery approach for the folding trajectory analysis of a beta-hairpin
Q27324706	Combinatorial pooling enables selective sequencing of the barley gene space
Q36189749	Combined Changes in Chloride Regulation and Neuronal Excitability Enable Primary Afferent Depolarization to Elicit Spiking without Compromising its Inhibitory Effects
Q113308483	Combined computational modeling and experimental analysis integrating chemical and mechanical signals suggests possible mechanism of shoot meristem maintenance
Q24813273	Combined evidence annotation of transposable elements in genome sequences
Q28489088	Combined model of intrinsic and extrinsic variability for computational network design with application to synthetic biology
Q96617166	Combined model-free and model-sensitive reinforcement learning in non-human primates
Q35165746	Combined role of seizure-induced dendritic morphology alterations and spine loss in newborn granule cells with mossy fiber sprouting on the hyperexcitability of a computer model of the dentate gyrus
Q30382978	Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.
Q28608315	Combining Search, Social Media, and Traditional Data Sources to Improve Influenza Surveillance
Q35105556	Combining experiments and simulations using the maximum entropy principle
Q33508242	Combining fungal biopesticides and insecticide-treated bednets to enhance malaria control
Q98193566	Combining hypoxia-activated prodrugs and radiotherapy in silico: Impact of treatment scheduling and the intra-tumoural oxygen landscape
Q33752043	Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast
Q93255667	Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution
Q33780986	Combining network modeling and gene expression microarray analysis to explore the dynamics of Th1 and Th2 cell regulation
Q33366532	Combining structural connectivity and response latencies to model the structure of the visual system
Q33523795	Combining structure and sequence information allows automated prediction of substrate specificities within enzyme families
Q31086972	Combining the finite element method with structural connectome-based analysis for modeling neurotrauma: connectome neurotrauma mechanics
Q92440344	Comment on "A comprehensive overview and evaluation of circular RNA detection tools"
Q40417925	Comment on "Broadband Criticality of Human Brain Network Synchronization" by Kitzbichler MG, Smith ML, Christensen SR, Bullmore E (2009) PLoS Comput Biol 5: e1000314.
Q35215851	Comments on "Human dominant disease genes are enriched in paralogs originating from whole genome duplication".
Q41835099	Communication and common interest
Q41862755	Communication efficiency and congestion of signal traffic in large-scale brain networks
Q27320028	Communication over the network of binary switches regulates the activation of A2A adenosine receptor
Q35238111	Communication routes in ARID domains between distal residues in helix 5 and the DNA-binding loops
Q35233534	Communication through resonance in spiking neuronal networks
Q55447824	Community interactions and spatial structure shape selection on antibiotic resistant lineages.
Q55342498	Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
Q99719931	Community-level impacts of spatial repellents for control of diseases vectored by Aedes aegypti mosquitoes
Q33897934	Comorbidities in the diseasome are more apparent than real: What Bayesian filtering reveals about the comorbidities of depression
Q28539600	Compact modeling of allosteric multisite proteins: application to a cell size checkpoint
Q28550960	Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction
Q113309426	Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage
Q34625297	Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.
Q24814923	Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes
Q113308728	Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models
Q28484799	Comparative analysis of RNA families reveals distinct repertoires for each domain of life
Q35186314	Comparative analysis of human tissue interactomes reveals factors leading to tissue-specific manifestation of hereditary diseases
Q35133647	Comparative analysis of the macroscale structural connectivity in the macaque and human brain
Q28539590	Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species
Q113308954	Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections
Q24813518	Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions
Q58000968	Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions
Q21092575	Comparative genomics search for losses of long-established genes on the human lineage
Q113309248	Comparative mapping of crawling-cell morphodynamics in deep learning-based feature space
Q39535857	Comparative microbial modules resource: generation and visualization of multi-species biclusters.
Q58569784	Comparative structural dynamic analysis of GTPases
Q90696381	Comparative study of population genomic approaches for mapping colony-level traits
Q59809268	Comparing Bayesian and non-Bayesian accounts of human confidence reports
Q27324018	Comparing algorithms that reconstruct cell lineage trees utilizing information on microsatellite mutations
Q124016906	Comparing and linking machine learning and semi-mechanistic models for the predictability of endemic measles dynamics
Q38619965	Comparing efficacies of moxifloxacin, levofloxacin and gatifloxacin in tuberculosis granulomas using a multi-scale systems pharmacology approach.
Q28473192	Comparing families of dynamic causal models
Q36278407	Comparing individual-based approaches to modelling the self-organization of multicellular tissues
Q113309391	Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C
Q113309663	Comparing the Dictyostelium and Entamoeba Genomes Reveals an Ancient Split in the Conosa Lineage
Q21092583	Comparing the Dictyostelium and Entamoeba genomes reveals an ancient split in the Conosa lineage
Q58758631	Comparing two classes of biological distribution systems using network analysis
Q36095876	Comparison of Detailed and Simplified Models of Human Atrial Myocytes to Recapitulate Patient Specific Properties
Q33747657	Comparison of REST cistromes across human cell types reveals common and context-specific functions
Q35156813	Comparison of filtering methods for the modeling and retrospective forecasting of influenza epidemics
Q57762576	Comparison of fluctuations in global network topology of modeled and empirical brain functional connectivity
Q42979247	Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al.
Q34181317	Comparison of insertional RNA editing in Myxomycetes
Q112286897	Comparison of metabolic states using genome-scale metabolic models
Q91727924	Comparison of methods for rhythm analysis of complex animals' acoustic signals
Q35826095	Comparisons of Allergenic and Metazoan Parasite Proteins: Allergy the Price of Immunity
Q33747554	Compensation for changing motor uncertainty
Q28555070	Competing Mechanistic Hypotheses of Acetaminophen-Induced Hepatotoxicity Challenged by Virtual Experiments
Q34454620	Competing ParA structures space bacterial plasmids equally over the nucleoid
Q91055897	Competing endogenous RNA crosstalk at system level
Q64114700	Competing evolutionary paths in growing populations with applications to multidrug resistance
Q27323267	Competition for antigen between Th1 and Th2 responses determines the timing of the immune response switch during Mycobaterium avium subspecies paratuberulosis infection in ruminants
Q90458462	Competition-driven evolution of organismal complexity
Q36061184	Competitive Dynamics in MSTd: A Mechanism for Robust Heading Perception Based on Optic Flow
Q45787586	Competitive tuning: Competition's role in setting the frequency-dependence of Ca2+-dependent proteins
Q34318183	Complementarity of spike- and rate-based dynamics of neural systems
Q91596603	Complementary computational and experimental evaluation of missense variants in the ROMK potassium channel
Q35882788	Complete Firing-Rate Response of Neurons with Complex Intrinsic Dynamics
Q47238514	Complete hazard ranking to analyze right-censored data: An ALS survival study.
Q27320918	Complete mapping of substrate translocation highlights the role of LeuT N-terminal segment in regulating transport cycle
Q36255281	Complex Dynamics of Virus Spread from Low Infection Multiplicities: Implications for the Spread of Oncolytic Viruses
Q90135289	Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program
Q115359870	Complex interactions can create persistent fluctuations in high-diversity ecosystems
Q33250565	Complex parameter landscape for a complex neuron model
Q34311524	Complex spatial dynamics of oncolytic viruses in vitro: mathematical and experimental approaches
Q113308999	Complexity and diversity in sparse code priors improve receptive field characterization of Macaque V1 neurons
Q95943069	Compositional Lotka-Volterra describes microbial dynamics in the simplex
Q54936338	Compositional clustering in task structure learning.
Q93150086	Compounds without borders: A mechanism for quantifying complex odors and responses to scent-pollution in bumblebees
Q113309502	Comprehensive DNA Signature Discovery and Validation
Q33285036	Comprehensive DNA signature discovery and validation
Q35803469	Comprehensive Meta-analysis of Ontology Annotated 16S rRNA Profiles Identifies Beta Diversity Clusters of Environmental Bacterial Communities.
Q28541597	Comprehensive analyses of ventricular myocyte models identify targets exhibiting favorable rate dependence
Q33332474	Comprehensive analysis of affymetrix exon arrays using BioConductor
Q112577154	Comprehensive analysis of lectin-glycan interactions reveals determinants of lectin specificity
Q90262530	Comprehensive analysis of structural and sequencing data reveals almost unconstrained chain pairing in TCRαβ complex
Q21145667	Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes
Q113309512	Comprehensive annotation of human bidirectional promoters identifies co-regulatory relationships among somatic breast and ovarian cancer genes
Q59811420	Comprehensive computational modelling of the development of mammalian cortical connectivity underlying an architectonic type principle
Q112638547	Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more
Q21145316	Comprehensive modelling of the Neurospora circadian clock and its temperature compensation
Q113308675	Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart
Q35034116	Comprehensive repertoire of foldable regions within whole genomes
Q35043417	Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial
Q92342863	Comprehensively benchmarking applications for detecting copy number variation
Q113308824	Computable early Caenorhabditis elegans embryo with a phase field model
Q34554789	Computation and measurement of cell decision making errors using single cell data
Q35548494	Computation in dynamically bounded asymmetric systems
Q30872872	Computation of conformational coupling in allosteric proteins
Q28477488	Computation of steady-state probability distributions in stochastic models of cellular networks
Q56355514	Computation predicts rapidly adapting mechanotransduction currents cannot account for tactile encoding in Merkel cell-neurite complexes
Q36257557	Computational Account of Spontaneous Activity as a Signature of Predictive Coding
Q36251118	Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication
Q28647916	Computational Biology: Moving into the Future One Click at a Time
Q26769024	Computational Cancer Biology: An Evolutionary Perspective
Q27681832	Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor
Q28554438	Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction
Q113309239	Computational Eurotransplant kidney allocation simulations demonstrate the feasibility and benefit of T-cell epitope matching
Q36023839	Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation
Q35859983	Computational Identification of Mechanistic Factors That Determine the Timing and Intensity of the Inflammatory Response
Q113309567	Computational Inference of Neural Information Flow Networks
Q43198221	Computational Methods for Exploration and Analysis of Macromolecular Structure and Dynamics
Q113309558	Computational Model Explains High Activity and Rapid Cycling of Rho GTPases within Protein Complexes
Q35847324	Computational Model of MicroRNA Control of HIF-VEGF Pathway: Insights into the Pathophysiology of Ischemic Vascular Disease and Cancer
Q113309590	Computational Model of VEGF Spatial Distribution in Muscle and Pro-Angiogenic Cell Therapy
Q26770169	Computational Modeling, Formal Analysis, and Tools for Systems Biology
Q27317127	Computational Modelling of Metastasis Development in Renal Cell Carcinoma
Q35873092	Computational Models Describing Possible Mechanisms for Generation of Excessive Beta Oscillations in Parkinson's Disease
Q35989733	Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer
Q28541174	Computational analyses of synergism in small molecular network motifs
Q25257719	Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain
Q113309380	Computational analysis of GAL pathway pinpoints mechanisms underlying natural variation
Q28484932	Computational analysis of Rho GTPase cycling
Q113308445	Computational analysis of memory consolidation following inhibitory avoidance (IA) training in adult and infant rats: Critical roles of CaMKIIα and MeCP2
Q28914782	Computational analysis of mouse piRNA sequence and biogenesis
Q113309436	Computational analysis of mouse piRNA sequence and biogenesis
Q21092524	Computational analysis of phosphopeptide binding to the polo-box domain of the mitotic kinase PLK1 using molecular dynamics simulation
Q52610166	Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources.
Q33483308	Computational analysis of viscoelastic properties of crosslinked actin networks
Q33632265	Computational analysis of whole-genome differential allelic expression data in human
Q27316676	Computational and Empirical Studies Predict Mycobacterium tuberculosis-Specific T Cells as a Biomarker for Infection Outcome
Q113309404	Computational and Experimental Analysis of Redundancy in the Central Metabolism of Geobacter sulfurreducens
Q28472168	Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens
Q90356255	Computational and robotic modeling reveal parsimonious combinations of interactions between individuals in schooling fish
Q34145620	Computational and statistical analysis of protein mass spectrometry data
Q33269790	Computational aspects of feedback in neural circuits
Q113309564	Computational aspects of feedback in neural circuits
Q34758162	Computational assessment of the cooperativity between RNA binding proteins and MicroRNAs in Transcript Decay
Q35156974	Computational biology and bioinformatics in Nigeria
Q21145655	Computational biology in Argentina
Q33304208	Computational biology in Brazil
Q33513963	Computational biology in Colombia
Q33325893	Computational biology in Costa Rica: the role of a small country in the global context of bioinformatics
Q33308251	Computational biology in Cuba: an opportunity to promote science in a developing country
Q29994436	Computational biology resources lack persistence and usability
Q34671668	Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation.
Q28473027	Computational complementation: a modelling approach to study signalling mechanisms during legume autoregulation of nodulation
Q90744875	Computational design and interpretation of single-RNA translation experiments
Q21145315	Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity
Q91886115	Computational design of improved standardized chemotherapy protocols for grade II oligodendrogliomas
Q90504580	Computational design of substrate selective inhibition
Q58106595	Computational discovery of dynamic cell line specific Boolean Networks from multiplex time-course data
Q112637933	Computational drug repurposing against SARS-CoV-2 reveals plasma membrane cholesterol depletion as key factor of antiviral drug activity
Q24813222	Computational ecology: from the complex to the simple and back
Q107112193	Computational epitope map of SARS-CoV-2 spike protein
Q98775137	Computational estimates of mechanical constraints on cell migration through the extracellular matrix
Q113308729	Computational exploration of treadmilling and protrusion growth observed in fire ant rafts
Q33406225	Computational fitness landscape for all gene-order permutations of an RNA virus
Q28475699	Computational fragment-based binding site identification by ligand competitive saturation
Q64069351	Computational geometry for modeling neural populations: From visualization to simulation
Q113309229	Computational identification and experimental characterization of preferred downstream positions in human core promoters
Q36278417	Computational identification of the selenocysteine tRNA (tRNASec) in genomes
Q27339641	Computational inference of neural information flow networks
Q113308839	Computational investigation of blood cell transport in retinal microaneurysms
Q36273980	Computational investigation of sphingosine kinase 1 (SphK1) and calcium dependent ERK1/2 activation downstream of VEGFR2 in endothelial cells
Q28478887	Computational investigation of the changing patterns of subtype specific NMDA receptor activation during physiological glutamatergic neurotransmission
Q28472676	Computational lipidology: predicting lipoprotein density profiles in human blood plasma
Q35586804	Computational mass spectrometry-based proteomics
Q55314135	Computational mechanisms underlying cortical responses to the affordance properties of visual scenes.
Q30000994	Computational methods for protein identification from mass spectrometry data
Q33265219	Computational model explains high activity and rapid cycling of Rho GTPases within protein complexes
Q30912268	Computational model of membrane fission catalyzed by ESCRT-III.
Q28474938	Computational model of the insect pheromone transduction cascade
Q33258465	Computational model of vascular endothelial growth factor spatial distribution in muscle and pro-angiogenic cell therapy
Q28477922	Computational modeling and analysis of insulin induced eukaryotic translation initiation
Q31171958	Computational modeling and analysis of iron release from macrophages
Q31036423	Computational modeling of allosteric communication reveals organizing principles of mutation-induced signaling in ABL and EGFR kinases
Q30363516	Computational modeling of allosteric regulation in the hsp90 chaperones: a statistical ensemble analysis of protein structure networks and allosteric communications.
Q113309178	Computational modeling of blood component transport related to coronary artery thrombosis in Kawasaki disease
Q27319493	Computational modeling of seizure dynamics using coupled neuronal networks: factors shaping epileptiform activity
Q33402444	Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility
Q104754002	Computational modeling suggests binding-induced expansion of Epsin disordered regions upon association with AP2
Q113309304	Computational modelling of cell motility modes emerging from cell-matrix adhesion dynamics
Q112268410	Computational modelling of muscle fibre operating ranges in the hindlimb of a small ground bird (Eudromia elegans), with implications for modelling locomotion in extinct species
Q90375181	Computational modelling predicts substantial carbon assimilation gains for C3 plants with a single-celled C4 biochemical pump
Q33658642	Computational models of HIV-1 resistance to gene therapy elucidate therapy design principles
Q28475512	Computational models of the Notch network elucidate mechanisms of context-dependent signaling
Q96964065	Computational models to improve surveillance for cassava brown streak disease and minimize yield loss
Q92438383	Computational optimization of associative learning experiments
Q28533404	Computational optogenetics: empirically-derived voltage- and light-sensitive channelrhodopsin-2 model
Q91800276	Computational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters
Q118110440	Computational phenotyping of brain-behavior dynamics underlying approach-avoidance conflict in major depressive disorder
Q34321658	Computational phenotyping of two-person interactions reveals differential neural response to depth-of-thought
Q28474670	Computational prediction and experimental assessment of secreted/surface proteins from Mycobacterium tuberculosis H37Rv
Q28475319	Computational prediction and experimental verification of new MAP kinase docking sites and substrates including Gli transcription factors
Q28537984	Computational prediction of alanine scanning and ligand binding energetics in G-protein coupled receptors
Q30317857	Computational predictions provide insights into the biology of TAL effector target sites
Q97555201	Computational principles of neural adaptation for binaural signal integration
Q28914725	Computational protein design quantifies structural constraints on amino acid covariation
Q33266803	Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria
Q113309566	Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria
Q112575725	Computational redesign of a fluorogen activating protein with Rosetta
Q28750801	Computational resources in infectious disease: limitations and challenges
Q92729753	Computational simulation of the reactive oxygen species and redox network in the regulation of chloroplast metabolism
Q113308845	Computational simulations and Ca2+ imaging reveal that slow synaptic depolarizations (slow EPSPs) inhibit fast EPSP evoked action potentials for most of their time course in enteric neurons
Q104069257	Computational study on ratio-sensing in yeast galactose utilization pathway
Q35439097	Computational thinking in life science education
Q61798358	Computational translation of genomic responses from experimental model systems to humans
Q38634659	Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors.
Q113309482	Computationally Derived Points of Fragility of a Human Cascade are Consistent with Current Therapeutic Strategies
Q36060825	Computationally Efficient Implementation of a Novel Algorithm for the General Unified Threshold Model of Survival (GUTS)
Q28469258	Computationally derived points of fragility of a human cascade are consistent with current therapeutic strategies
Q57805326	Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents
Q27317225	Computer Simulations Imply Forelimb-Dominated Underwater Flight in Plesiosaurs
Q27334779	Computer simulation of cellular patterning within the Drosophila pupal eye
Q35097142	Computer simulations suggest a key role of membranous nanodomains in biliary lipid secretion
Q30369320	Computer-based screening of functional conformers of proteins.
Q99633660	Computer-guided binding mode identification and affinity improvement of an LRR protein binder without structure determination
Q36045202	Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations.
Q42424931	Computing Biology
Q42329677	Computing the Dynamic Supramolecular Structural Proteome
Q35866304	Computing the Local Field Potential (LFP) from Integrate-and-Fire Network Models
Q30466487	Computing with neural synchrony
Q30934176	ConPADE: genome assembly ploidy estimation from next-generation sequencing data
Q47130837	Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin
Q58703297	Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network
Q34979323	Conditional cooperativity of toxin - antitoxin regulation can mediate bistability between growth and dormancy
Q113309332	Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?
Q30978067	Conditions for the evolution of gene clusters in bacterial genomes
Q33632136	Conductance ratios and cellular identity
Q104514803	Confidence intervals by constrained optimization-An algorithm and software package for practical identifiability analysis in systems biology
Q64064826	Confidence resets reveal hierarchical adaptive learning in humans
Q34281708	Confidence sharing: an economic strategy for efficient information flows in animal groups
Q34426398	Confidence-based somatic mutation evaluation and prioritization
Q41499212	Confirmation bias in human reinforcement learning: Evidence from counterfactual feedback processing
Q36110154	Conflict Resolution as Near-Threshold Decision-Making: A Spiking Neural Circuit Model with Two-Stage Competition for Antisaccadic Task
Q113308580	Conflict and competition between model-based and model-free control
Q28551872	Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals
Q24288785	Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis
Q34064146	Conformation regulation of the X chromosome inactivation center: a model
Q113309643	Conformational Changes in Protein Loops and Helices Induced by Post-Translational Phosphorylation
Q28550499	Conformational Dynamics and Binding Free Energies of Inhibitors of BACE-1: From the Perspective of Protonation Equilibria
Q28474700	Conformational changes and slow dynamics through microsecond polarized atomistic molecular simulation of an integral Kv1.2 ion channel
Q28469001	Conformational changes in protein loops and helices induced by post-translational phosphorylation
Q35034161	Conformational changes in talin on binding to anionic phospholipid membranes facilitate signaling by integrin transmembrane helices
Q34205849	Conformational control of the binding of the transactivation domain of the MLL protein and c-Myb to the KIX domain of CREB
Q28535095	Conformational coupling between receptor and kinase binding sites through a conserved salt bridge in a signaling complex scaffold protein
Q92440377	Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II
Q36278423	Conformational diversity analysis reveals three functional mechanisms in proteins
Q64114775	Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations
Q27333790	Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations
Q34288740	Conformational spread in the flagellar motor switch: a model study
Q28472382	Conformational transitions upon ligand binding: holo-structure prediction from apo conformations
Q43139213	Confronting the ethical challenges of big data in public health
Q34585640	Connecting a connectome to behavior: an ensemble of neuroanatomical models of C. elegans klinotaxis
Q34446601	Connecting macroscopic observables and microscopic assembly events in amyloid formation using coarse grained simulations
Q92451177	Connecting signaling and metabolic pathways in EGF receptor-mediated oncogenesis of glioblastoma
Q28488598	Connecting the kinetics and energy landscape of tRNA translocation on the ribosome
Q28488160	Connection between oligomeric state and gating characteristics of mechanosensitive ion channels
Q28550178	Connectivity Homology Enables Inter-Species Network Models of Synthetic Lethality
Q113308741	Connectivity and dynamics in the olfactory bulb
Q113309561	Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks
Q33267842	Connectivity in the yeast cell cycle transcription network: inferences from neural networks
Q33654174	Connectivity, cycles, and persistence thresholds in metapopulation networks
Q90628826	Consensus and uncertainty in the geographic range of Aedes aegypti and Aedes albopictus in the contiguous United States: Multi-model assessment and synthesis
Q28477581	Consensus-phenotype integration of transcriptomic and metabolomic data implies a role for metabolism in the chemosensitivity of tumour cells
Q40166898	Consequences of converting graded to action potentials upon neural information coding and energy efficiency
Q36064586	Conservation in Mammals of Genes Associated with Aggression-Related Behavioral Phenotypes in Honey Bees
Q94511954	Conservation laws by virtue of scale symmetries in neural systems
Q113309601	Conservation of Expression and Sequence of Metabolic Genes is Reflected by Activity Across Metabolic States
Q64073921	Conservation of conformational dynamics across prokaryotic actins
Q33255328	Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states
Q33506599	Conserved expression patterns predict microRNA targets
Q35053021	Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution
Q28602773	Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation
Q34844917	Consistent estimation of Gibbs energy using component contributions
Q121635895	Consistent pattern of epidemic slowing across many geographies led to longer, flatter initial waves of the COVID-19 pandemic
Q36063811	Constrained Allocation Flux Balance Analysis
Q113308897	Constrained brain volume in an efficient coding model explains the fraction of excitatory and inhibitory neurons in sensory cortices
Q90458475	Constrained inference in sparse coding reproduces contextual effects and predicts laminar neural dynamics
Q34769239	Constraint and contingency in multifunctional gene regulatory circuits
Q28474659	Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation
Q28538200	Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens
Q35999356	Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants
Q112761055	Constraints on the deformation of the vibrissa within the follicle
Q113309041	Constructing benchmark test sets for biological sequence analysis using independent set algorithms
Q34085568	Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data
Q33963719	Construction and modelling of an inducible positive feedback loop stably integrated in a mammalian cell-line
Q35224783	Construction and validation of a regulatory network for pluripotency and self-renewal of mouse embryonic stem cells
Q113309037	Construction of disease-specific cytokine profiles by associating disease genes with immune responses
Q31134525	Construction, visualisation, and clustering of transcription networks from microarray expression data
Q113265284	Contact tracing efficiency, transmission heterogeneity, and accelerating COVID-19 epidemics
Q21558516	Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth
Q28553187	Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering
Q35634191	Context-Dependent Role of Mitochondrial Fusion-Fission in Clonal Expansion of mtDNA Mutations
Q33855534	Context-dependent encoding of fear and extinction memories in a large-scale network model of the basal amygdala
Q61451738	Context-explorer: Analysis of spatially organized protein expression in high-throughput screens
Q28472711	Context-specific metabolic networks are consistent with experiments
Q104499352	Context-specific network modeling identifies new crosstalk in β-adrenergic cardiac hypertrophy
Q36253768	Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome
Q113308489	Contextual cues are not unique for motor learning: Task-dependant switching of feedback controllers
Q64068058	Contextual influence on confidence judgments in human reinforcement learning
Q27316301	Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers
Q27322767	Continuous attractor network model for conjunctive position-by-velocity tuning of grid cells
Q33654156	Continuous attractors with morphed/correlated maps
Q30423182	Contradictory behavioral biases result from the influence of past stimuli on perception
Q96137609	Contrasting model mechanisms of alanine aminotransferase (ALT) release from damaged and necrotic hepatocytes as an example of general biomarker mechanisms
Q64067230	Contrasting the effects of adaptation and synaptic filtering on the timescales of dynamics in recurrent networks
Q91323056	Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression
Q35751160	Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast
Q35156770	Contribution of network connectivity in determining the relationship between gene expression and metabolite concentration changes
Q49925286	Control fast or control smart: When should invading pathogens be controlled?
Q36032432	Control of Ca2+ Influx and Calmodulin Activation by SK-Channels in Dendritic Spines
Q36214261	Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites
Q33320186	Control of cation permeation through the nicotinic receptor channel
Q113309399	Control of cation permeation through the nicotinic receptor channel
Q104069245	Control of filament length by a depolymerizing gradient
Q21145657	Control of membrane fusion mechanism by lipid composition: predictions from ensemble molecular dynamics
Q113309439	Control of membrane fusion mechanism by lipid composition: predictions from ensemble molecular dynamics
Q55424519	Control of neurite growth and guidance by an inhibitory cell-body signal.
Q113308924	Control of tissue homeostasis, tumorigenesis, and degeneration by coupled bidirectional bistable switches
Q28480580	Control of whole heart geometry by intramyocardial mechano-feedback: a model study
Q35931515	Control of βAR- and N-methyl-D-aspartate (NMDA) Receptor-Dependent cAMP Dynamics in Hippocampal Neurons
Q28547287	Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation
Q113308997	Controlling astrocyte-mediated synaptic pruning signals for schizophrenia drug repurposing with deep graph networks
Q113308831	Controlling gene expression timing through gene regulatory architecture
Q64106575	Controlling seizure propagation in large-scale brain networks
Q60933635	Conventional analysis of trial-by-trial adaptation is biased: Empirical and theoretical support using a Bayesian estimator
Q113309128	Conventional measures of intrinsic excitability are poor estimators of neuronal activity under realistic synaptic inputs
Q64240621	Convergent perturbation of the human domain-resolved interactome by viruses and mutations inducing similar disease phenotypes
Q34426370	Convergent transmission of RNAi guide-target mismatch information across Argonaute internal allosteric network
Q35627859	Convex clustering: an attractive alternative to hierarchical clustering
Q111174286	Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment
Q33265216	Cooperation is fleeting in the world of transposable elements
Q57061662	Cooperation of dual modes of cell motility promotes epithelial stress relaxation to accelerate wound healing
Q33261001	Cooperation prevails when individuals adjust their social ties
Q35661490	Cooperative DNA Recognition Modulated by an Interplay between Protein-Protein Interactions and DNA-Mediated Allostery
Q94029873	Cooperative adaptation to therapy (CAT) confers resistance in heterogeneous non-small cell lung cancer
Q34671689	Cooperative adaptive responses in gene regulatory networks with many degrees of freedom
Q21045427	Cooperative binding
Q33283726	Cooperative gating and spatial organization of membrane proteins through elastic interactions
Q41282687	Cooperative stochastic binding and unbinding explain synaptic size dynamics and statistics.
Q28473610	Cooperative transition between open and closed conformations in potassium channels
Q33486476	Cooperativity dominates the genomic organization of p53-response elements: a mechanistic view
Q33565372	Coordinate dependence of variability analysis
Q33361958	Coordinate regulation of G protein signaling via dynamic interactions of receptor and GAP
Q28474514	Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae
Q31106642	Coordinated optimization of visual cortical maps (I) symmetry-based analysis
Q41332448	Coordinated optimization of visual cortical maps (II) numerical studies
Q28551973	Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling
Q34758180	Coordination of rapid sphingolipid responses to heat stress in yeast
Q33283060	Coping with viral diversity in HIV vaccine design
Q42979227	Coping with viral diversity in HIV vaccine design: a response to Nickle et al.
Q54950273	Correcting for batch effects in case-control microbiome studies.
Q64953814	Correction of copy number induced false positives in CRISPR screens.
Q35133744	Correction of distortion in flattened representations of the cortical surface allows prediction of V1-V3 functional organization from anatomy
Q45910182	Correction: (A)Symmetric Stem Cell Replication and Cancer.
Q55411720	Correction: A Bayesian Approach to Quantifying the Effects of Mass Poultry Vaccination upon the Spatial and Temporal Dynamics of H5N1 in Northern Vietnam.
Q25257747	Correction: A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation
Q60539390	Correction: A Combination of Transcriptional and MicroRNA Regulation Improves the Stability of the Relative Concentrations of Target Genes
Q42427807	Correction: A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution
Q60539418	Correction: A Computational Model of the Fetal Circulation to Quantify Blood Redistribution in Intrauterine Growth Restriction
Q46392450	Correction: A Dynamic View of Domain-Motif Interactions.
Q55533470	Correction: A Generalized Allosteric Mechanism for cis-Regulated Cyclic Nucleotide Binding Domains.
Q60550654	Correction: A Likelihood-Based Approach to Identifying Contaminated Food Products Using Sales Data: Performance and Challenges
Q55496905	Correction: A Mixture of Delta-Rules Approximation to Bayesian Inference in Change-Point Problems.
Q42315505	Correction: A Molecular Clock Infers Heterogeneous Tissue Age Among Patients with Barrett's Esophagus
Q36165232	Correction: A Network Biology Approach Identifies Molecular Cross-Talk between Normal Prostate Epithelial and Prostate Carcinoma Cells
Q45903733	Correction: A Neurocomputational Model of the Mismatch Negativity.
Q60539229	Correction: A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval
Q46591616	Correction: A Novel Three-Phase Model of Brain Tissue Microstructure.
Q46802530	Correction: A Simple Rule for Dendritic Spine and Axonal Bouton Formation Can Account for Cortical Reorganization after Focal Retinal Lesions.
Q42331262	Correction: A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability
Q42545239	Correction: A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis
Q47098603	Correction: A Unifying Probabilistic View of Associative Learning
Q42940473	Correction: A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent "Heterosynaptic" LTD in the Dentate Gyrus In Vivo
Q92683478	Correction: A dynamic genetic-hormonal regulatory network model explains multiple cellular behaviors of the root apical meristem of Arabidopsis thaliana
Q101154806	Correction: A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract
Q113308746	Correction: A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract
Q89474891	Correction: A mechanistic pan-cancer pathway model informed by multi-omics data interprets stochastic cell fate responses to drugs and mitogens
Q58735014	Correction: A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling
Q90589854	Correction: A model for the origin and development of visual orientation selectivity
Q113308852	Correction: A prediction tool for plaque progression based on patient-specific multi-physical modeling
Q113308462	Correction: A probabilistic model for the ultradian timing of REM sleep in mice
Q90437746	Correction: A unifying Bayesian account of contextual effects in value-based choice
Q92342880	Correction: Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models
Q42332240	Correction: Accuracy Maximization Analysis for Sensory-Perceptual Tasks: Computational Improvements, Filter Robustness, and Coding Advantages for Scaled Additive Noise
Q55444872	Correction: Adaptive, Fast Walking in a Biped Robot under Neuronal Control and Learning.
Q60550658	Correction: An In-Silico Model of Lipoprotein Metabolism and Kinetics for the Evaluation of Targets and Biomarkers in the Reverse Cholesterol Transport Pathway
Q42344297	Correction: An Integrative Approach for Modeling and Simulation of Heterocyst Pattern Formation in Cyanobacteria Filaments
Q42694947	Correction: Antenna Mechanism of Length Control of Actin Cables
Q58569791	Correction: Assessment of ab initio models of protein complexes by molecular dynamics
Q46531964	Correction: Astrocytes Optimize the Synaptic Transmission of Information.
Q64938194	Correction: Atrial arrhythmogenicity of KCNJ2 mutations in short QT syndrome: Insights from virtual human atria.
Q28483451	Correction: Automatic Filtering and Substantiation of Drug Safety Signals
Q46437426	Correction: Bang-Bang Control of Feeding: Role of Hypothalamic and Satiety Signals
Q60550656	Correction: Baseline CD4+ T Cell Counts Correlates with HIV-1 Synonymous Rate in HLA-B*5701 Subjects with Different Risk of Disease Progression
Q90872834	Correction: Bayesian hypothesis testing and experimental design for two-photon imaging data
Q113308688	Correction: Bayesian regression explains how human participants handle parameter uncertainty
Q42319666	Correction: Behavioral Modeling of Human Choices Reveals Dissociable Effects of Physical Effort and Temporal Delay on Reward Devaluation
Q60550651	Correction: Beyond Muscles Stiffness: Importance of State-Estimation to Account for Very Fast Motor Corrections
Q55116496	Correction: Bioinformatics in Malaysia: Hope, Initiative, Effort, Reality, and Challenges.
Q60539239	Correction: Bistability versus Bimodal Distributions in Gene Regulatory Processes from Population Balance
Q45916373	Correction: Brief Overview of Bioinformatics Activities in Singapore.
Q113308971	Correction: CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models
Q55041050	Correction: Cadherin-Dependent Cell Morphology in an Epithelium: Constructing a Quantitative Dynamical Model.
Q60539193	Correction: Calculating Evolutionary Dynamics in Structured Populations
Q43118052	Correction: Cell Fate Reprogramming by Control of Intracellular Network Dynamics
Q60550668	Correction: Cell Type Specific Alterations in Interchromosomal Networks across the Cell Cycle
Q42605296	Correction: ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections
Q46371114	Correction: Classifying RNA-Binding Proteins Based on Electrostatic Properties.
Q60539411	Correction: Collective Cell Motion in an Epithelial Sheet Can be Quantitatively Described by a Stochastic Interacting Particle Model
Q46406052	Correction: Combining the Finite Element Method with Structural Connectome-based Analysis for Modeling Neurotrauma: Connectome Neurotrauma Mechanics.
Q46166412	Correction: Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al.
Q42348580	Correction: Complex Dynamics of Virus Spread from Low Infection Multiplicities: Implications for the Spread of Oncolytic Viruses
Q43067013	Correction: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial
Q90190624	Correction: Comprehensively benchmarking applications for detecting copy number variation
Q60439527	Correction: Computational Biology in Colombia
Q46894729	Correction: Computational Model Explains High Activity and Rapid Cycling of Rho GTPases within Protein Complexes.
Q91552677	Correction: Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources
Q46166426	Correction: Computational and Experimental Analysis of Redundancy in the Central Metabolism of Geobacter sulfurreducens.
Q42632924	Correction: Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth
Q55433935	Correction: Correlated receptor transport processes buffer single-cell heterogeneity.
Q46473639	Correction: Critical Role of Transient Activity of MT1-MMP for ECM Degradation in Invadopodia.
Q114007455	Correction: Critical role of deadenylation in regulating poly(A) rhythms and circadian gene expression
Q42632452	Correction: Data-driven prediction and design of bZIP coiled-coil interactions
Q45802766	Correction: De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference.
Q42364193	Correction: Deciding Not to Decide: Computational and Neural Evidence for Hidden Behavior in Sequential Choice
Q92751214	Correction: Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action
Q101154946	Correction: Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease
Q64076642	Correction: Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter
Q43085875	Correction: Depletion of the Chromatin Looping Proteins CTCF and Cohesin Causes Chromatin Compaction: Insight into Chromatin Folding by Polymer Modelling
Q45908900	Correction: Differences in Cell Division Rates Drive the Evolution of Terminal Differentiation in Microbes.
Q55626710	Correction: Differential Expression Analysis for Pathways.
Q55524109	Correction: Digital Atlasing and Standardization in the Mouse Brain.
Q42388908	Correction: Direct Correlation between Motile Behavior and Protein Abundance in Single Cells
Q55327372	Correction: Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.
Q54955998	Correction: Disentangling the Roles of Approach, Activation and Valence in Instrumental and Pavlovian Responding.
Q60539161	Correction: Divisive Gain Modulation with Dynamic Stimuli in Integrate-and-Fire Neurons
Q42361454	Correction: Dose-response relationships for environmentally mediated infectious disease transmission models
Q55517816	Correction: Dread and the Disvalue of Future Pain.
Q46263073	Correction: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks.
Q48524672	Correction: Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression.
Q55101707	Correction: Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue.
Q46473606	Correction: Effective Stimuli for Constructing Reliable Neuron Models.
Q64970865	Correction: Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection.
Q56888963	Correction: Effects of Heterogeneous and Clustered Contact Patterns on Infectious Disease Dynamics
Q43144077	Correction: Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data
Q57459846	Correction: Elucidation of molecular kinetic schemes from macroscopic traces using system identification
Q46088605	Correction: Emergence of Functional Hierarchy in a Multiple Timescale Neural Network Model: A Humanoid Robot Experiment.
Q46547183	Correction: Emergence of Protein Fold Families through Rational Design.
Q42322359	Correction: Emergence of Slow-Switching Assemblies in Structured Neuronal Networks
Q60550666	Correction: Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features
Q60550646	Correction: Environmental Statistics and Optimal Regulation
Q64097218	Correction: Epistasis in genomic and survival data of cancer patients
Q47160227	Correction: Error-Robust Modes of the Retinal Population Code
Q46016050	Correction: Estimating the Stochastic Bifurcation Structure of Cellular Networks.
Q113309190	Correction: Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape
Q55101803	Correction: Evolution of Resistance to Targeted Anti-Cancer Therapies during Continuous and Pulsed Administration Strategies.
Q42577848	Correction: Evolution of Self-Organized Task Specialization in Robot Swarms
Q113308866	Correction: Expectancy-based rhythmic entrainment as continuous Bayesian inference
Q60539417	Correction: Exploration of the Dynamic Properties of Protein Complexes Predicted from Spatially Constrained Protein-Protein Interaction Networks
Q60539419	Correction: Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model
Q60550662	Correction: Exploring the miRNA Regulatory Network Using Evolutionary Correlations
Q113308862	Correction: Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli
Q45828993	Correction: Folding Very Short Peptides Using Molecular Dynamics.
Q90610584	Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA
Q46207064	Correction: Frequent Gain and Loss of Functional Transcription Factor Binding Sites.
Q91552658	Correction: From Dynamic Expression Patterns to Boundary Formation in the Presomitic Mesoderm
Q92983712	Correction: From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses
Q90561662	Correction: Frontal cortex tracks surprise separately for different sensory modalities but engages a common inhibitory control mechanism
Q47105456	Correction: Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle.
Q42554782	Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training
Q90610620	Correction: Generation of Binary Tree-Child phylogenetic networks
Q64982723	Correction: Geospatial characteristics of measles transmission in China during 2005-2014.
Q113308463	Correction: Graph neural fields: A framework for spatiotemporal dynamical models on the human connectome
Q113308836	Correction: Grey-box modeling and hypothesis testing of functional near-infrared spectroscopy-based cerebrovascular reactivity to anodal high-definition tDCS in healthy humans
Q42334012	Correction: Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI).
Q60539385	Correction: Heterogeneity, Mixing, and the Spatial Scales of Mosquito-Borne Pathogen Transmission
Q45891048	Correction: How Does Cross-Reactive Stimulation Affect the Longevity of CD8+ T Cell Memory?
Q64065891	Correction: How pupil responses track value-based decision-making during and after reinforcement learning
Q100757667	Correction: Humans adapt their anticipatory eye movements to the volatility of visual motion properties
Q60539183	Correction: Identification of Potential Pathway Mediation Targets in Toll-like Receptor Signaling
Q47141454	Correction: Identifying influential neighbors in animal flocking
Q57951867	Correction: Impact of Different Oseltamivir Regimens on Treating Influenza A Virus Infection and Resistance Emergence: Insights from a Modelling Study
Q42355469	Correction: Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets
Q43102741	Correction: Improving Collective Estimations Using Resistance to Social Influence
Q24816841	Correction: Improving the Precision of the Structure–Function Relationship by Considering Phylogenetic Context
Q46894828	Correction: In Search of the Biological Significance of Modular Structures in Protein Networks.
Q64069361	Correction: In-silico dynamic analysis of cytotoxic drug administration to solid tumours: Effect of binding affinity and vessel permeability
Q92683485	Correction: Infectious reactivation of cytomegalovirus explaining age- and sex-specific patterns of seroprevalence
Q42317557	Correction: Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data
Q46027382	Correction: Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays.
Q42696240	Correction: Inferring Neuronal Dynamics from Calcium Imaging Data Using Biophysical Models and Bayesian Inference
Q60550645	Correction: Inferring on the Intentions of Others by Hierarchical Bayesian Learning
Q45774778	Correction: Integrated Text Mining and Chemoinformatics Analysis Associates Diet to Health Benefit at Molecular Level
Q46791035	Correction: Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision.
Q45874290	Correction: Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy
Q42345963	Correction: Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches
Q58066614	Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
Q58066619	Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
Q58066622	Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
Q58066628	Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
Q46673813	Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes.
Q47555419	Correction: Lack of Ecological and Life History Context Can Create the Illusion of Social Interactions in Dictyostelium discoideum
Q28468460	Correction: Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing
Q60539394	Correction: Learning Gene Networks under SNP Perturbations Using eQTL Datasets
Q60550670	Correction: Limits of Feedback Control in Bacterial Chemotaxis
Q58794496	Correction: Limits on reliable information flows through stochastic populations
Q113308486	Correction: Linking statistical shape models and simulated function in the healthy adult human heart
Q60539405	Correction: Long Non-Coding RNA and Alternative Splicing Modulations in Parkinson’s Leukocytes Identified by RNA Sequencing
Q55295021	Correction: MAGPIE: Simplifying access and execution of computational models in the life sciences.
Q47121822	Correction: MOSAIC: A Multiscale Model of Osteogenesis and Sprouting Angiogenesis with Lateral Inhibition of Endothelial Cells.
Q60539386	Correction: Mathematical Modeling of Heterogeneous Electrophysiological Responses in Human β-Cells
Q42773048	Correction: Measuring Fisher Information Accurately in Correlated Neural Populations
Q42576941	Correction: Membrane Partitioning of Anionic, Ligand-Coated Nanoparticles Is Accompanied by Ligand Snorkeling, Local Disordering, and Cholesterol Depletion
Q43161999	Correction: Microbial Forensics: Predicting Phenotypic Characteristics and Environmental Conditions from Large-Scale Gene Expression Profiles
Q45778291	Correction: Model Cortical Association Fields Account for the Time Course and Dependence on Target Complexity of Human Contour Perception
Q113308864	Correction: Modeling and MEG evidence of early consonance processing in auditory cortex
Q90610642	Correction: Modeling differentiation-state transitions linked to therapeutic escape in triple-negative breast cancer
Q113308465	Correction: Modeling multi-sensory feedback control of zebrafish in a flow
Q46321810	Correction: Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation.
Q113308863	Correction: Modelling locust foraging: How and why food affects group formation
Q92751266	Correction: Most Undirected Random Graphs Are Amplifiers of Selection for Birth-Death Dynamics, but Suppressors of Selection for Death-Birth Dynamics
Q42361142	Correction: Multi-level Modeling of Light-Induced Stomatal Opening Offers New Insights into Its Regulation by Drought
Q46869603	Correction: Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection.
Q42363516	Correction: Multiscale Approach to the Determination of the Photoactive Yellow Protein Signaling State Ensemble
Q42365949	Correction: Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression
Q55555434	Correction: Music in Our Ears: The Biological Bases of Musical Timbre Perception.
Q42537236	Correction: Neurally Encoding Time for Olfactory Navigation
Q46212991	Correction: New Maximum Likelihood Estimators for Eukaryotic Intron Evolution.
Q113308442	Correction: Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences
Q113308871	Correction: On the evolution and development of morphological complexity: A view from gene regulatory networks
Q28474655	Correction: Optimal Drug Synergy in Antimicrobial Treatments
Q28474896	Correction: Optimal Drug Synergy in Antimicrobial Treatments
Q100757593	Correction: Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces
Q42364163	Correction: Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference
Q60539412	Correction: Organism-Adapted Specificity of the Allosteric Regulation of Pyruvate Kinase in Lactic Acid Bacteria
Q46970342	Correction: PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution
Q42333977	Correction: Parameter estimation for multistage clonal expansion models from cancer incidence data: A practical identifiability analysis
Q64929611	Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.
Q46077191	Correction: Persistent Activity in Neural Networks with Dynamic Synapses.
Q42644454	Correction: Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-random Features of Cortical Synaptic Wiring
Q113308874	Correction: Practical considerations for measuring the effective reproductive number, Rt
Q28535376	Correction: Prediction of Drug-Target Interactions for Drug Repositioning Only Based on Genomic Expression Similarity
Q42320796	Correction: Psychotic Experiences and Overhasty Inferences Are Related to Maladaptive Learning
Q113309151	Correction: Quantification of nematic cell polarity in three-dimensional tissues
Q60539408	Correction: Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress
Q42549101	Correction: Random Wiring, Ganglion Cell Mosaics, and the Functional Architecture of the Visual Cortex
Q60550665	Correction: Reactive Searching and Infotaxis in Odor Source Localization
Q48526385	Correction: Reading wild minds: A computational assay of Theory of Mind sophistication across seven primate species.
Q64991037	Correction: Recentrifuge: Robust comparative analysis and contamination removal for metagenomics.
Q92751241	Correction: Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable
Q113308851	Correction: Representation of foreseeable choice outcomes in orbitofrontal cortex triplet-wise interactions
Q92683506	Correction: Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers
Q42578781	Correction: Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis
Q113308815	Correction: SDImpute: A statistical block imputation method based on cell-level and gene-level information for dropouts in single-cell RNA-seq data
Q42357850	Correction: Separating Timing, Movement Conditions and Individual Differences in the Analysis of Human Movement
Q47138710	Correction: Sequential inference as a mode of cognition and its correlates in fronto-parietal and hippocampal brain regions
Q55527138	Correction: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations.
Q47119241	Correction: Signatures of criticality arise from random subsampling in simple population models
Q46207083	Correction: Silent Synapses, LTP, and the Indirect Parallel-Fibre Pathway: Computational Consequences of Optimal Cerebellar Noise-Processing.
Q100757657	Correction: Similarities and differences in spatial and non-spatial cognitive maps
Q45837664	Correction: Similarity Queries for Temporal Toxicogenomic Expression Profiles.
Q60539402	Correction: Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer
Q55287177	Correction: Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle.
Q60473624	Correction: Spartan: A Comprehensive Tool for Understanding Uncertainty in Simulations of Biological Systems
Q42368916	Correction: Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model
Q42357797	Correction: Spatial separation of two different pathways accounting for the generation of calcium signals in astrocytes
Q47125535	Correction: Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana.
Q90872897	Correction: Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer
Q45843468	Correction: Specificity and Evolvability in Eukaryotic Protein Interaction Networks.
Q60539189	Correction: Spike-Based Reinforcement Learning in Continuous State and Action Space: When Policy Gradient Methods Fail
Q113308453	Correction: Stability of spontaneous, correlated activity in mouse auditory cortex
Q113308809	Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models
Q113308416	Correction: Stress generation, relaxation and size control in confined tumor growth
Q45762236	Correction: Structure Modeling of All Identified G Protein–Coupled Receptors in the Human Genome
Q60550638	Correction: Structure-Based Druggability Assessment of the Mammalian Structural Proteome with Inclusion of Light Protein Flexibility
Q58699881	Correction: Subgraphs of functional brain networks identify dynamical constraints of cognitive control
Q42327528	Correction: Suppressed Expression of T-Box Transcription Factors Is Involved in Senescence in Chronic Obstructive Pulmonary Disease
Q55654621	Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance.
Q60550648	Correction: Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism
Q43177821	Correction: Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms
Q60539396	Correction: Task-Based Core-Periphery Organization of Human Brain Dynamics
Q113308879	Correction: Taste of time: A porous-medium model for human tongue surface with implications for early taste perception
Q45893565	Correction: Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression.
Q91581568	Correction: Temporal Gillespie algorithm: Fast simulation of contagion processes on time-varying networks
Q28974720	Correction: Ten Simple Rules for Selecting a Postdoctoral Position
Q64910782	Correction: Ten Simple Rules for Taking Advantage of Git and GitHub.
Q113308485	Correction: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries
Q45721158	Correction: Ten simple rules for structuring papers
Q107507541	Correction: Ten simple rules to colorize biological data visualization
Q46606533	Correction: The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes
Q64889879	Correction: The Equivalence of Information-Theoretic and Likelihood-Based Methods for Neural Dimensionality Reduction.
Q42739569	Correction: The Force at the Tip - Modelling Tension and Proliferation in Sprouting Angiogenesis
Q46027409	Correction: The Genome: An Outsider's View.
Q42739983	Correction: The Opponent Channel Population Code of Sound Location Is an Efficient Representation of Natural Binaural Sounds
Q47131295	Correction: The Ortholog Conjecture Is Untestable by the Current Gene Ontology but Is Supported by RNA Sequencing Data.
Q28469146	Correction: The Role of Compensatory Mutations in the Emergence of Drug Resistance
Q60539414	Correction: The Self-Limiting Dynamics of TGF-β Signaling In Silico and In Vitro, with Negative Feedback through PPM1A Upregulation
Q42364164	Correction: The missing link: Predicting connectomes from noisy and partially observed tract tracing data
Q28544474	Correction: The pharmacodynamics of the p53-Mdm2 targeting drug nutlin: the role of gene-switching noise
Q64071689	Correction: The role of the encapsulated cargo in microcompartment assembly
Q25255141	Correction: Time to Organize the Bioinformatics Resourceome
Q42751691	Correction: Time-Course Gene Set Analysis for Longitudinal Gene Expression Data
Q42322367	Correction: Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response
Q60539087	Correction: Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics
Q46166440	Correction: Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics.
Q47154330	Correction: Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators
Q43233123	Correction: When Less Is More: Non-monotonic Spike Sequence Processing in Neurons
Q42324159	Correction: When Optimal Feedback Control Is Not Enough: Feedforward Strategies Are Required for Optimal Control with Active Sensing
Q61796914	Correction: clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets
Q34411814	Correction: ensemble models of neutrophil trafficking in severe sepsis
Q42360819	Correction: lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites
Q34411809	Correction: quantifying and analyzing the network basis of genetic complexity
Q90076518	Correction: Minimal model of interictal and ictal discharges "Epileptor-2"
Q113308870	Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Q113309184	Correction: Personalized glucose forecasting for type 2 diabetes using data assimilation
Q28483556	Correlated electrostatic mutations provide a reservoir of stability in HIV protease
Q28541370	Correlated inter-domain motions in adenylate kinase
Q33700653	Correlated mutations: a hallmark of phenotypic amino acid substitutions
Q47134410	Correlated receptor transport processes buffer single-cell heterogeneity
Q64272293	Correlation Structure in Micro-ECoG Recordings is Described by Spatially Coherent Components
Q41888157	Correlation between oncogenic mutations and parameter sensitivity of the apoptosis pathway model
Q33658705	Correlation of influenza virus excess mortality with antigenic variation: application to rapid estimation of influenza mortality burden
Q36267401	Correlation-based model of artificially induced plasticity in motor cortex by a bidirectional brain-computer interface
Q35567600	Correlations and functional connections in a population of grid cells
Q113308523	Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences
Q27331720	Corresponding functional dynamics across the Hsp90 Chaperone family: insights from a multiscale analysis of MD simulations
Q35799129	Cortical Composition Hierarchy Driven by Spine Proportion Economical Maximization or Wire Volume Minimization
Q27316740	Cortical Resonance Frequencies Emerge from Network Size and Connectivity
Q34186912	Cortical Surround Interactions and Perceptual Salience via Natural Scene Statistics
Q35067190	Cortical and hippocampal correlates of deliberation during model-based decisions for rewards in humans
Q27335909	Cortical factor feedback model for cellular locomotion and cytofission
Q113309059	Cortical feedback and gating in odor discrimination and generalization
Q33518476	Cortical gamma rhythms modulate NMDAR-mediated spike timing dependent plasticity in a biophysical model
Q98181060	Cortical ignition dynamics is tightly linked to the core organisation of the human connectome
Q113308826	Cortical oscillations support sampling-based computations in spiking neural networks
Q35079801	Cortically-controlled population stochastic facilitation as a plausible substrate for guiding sensory transfer across the thalamic gateway
Q36107889	Cortico-Cortical Interactions during Acquisition and Use of a Neuroprosthetic Skill
Q34597876	Cost and effects of different admission screening strategies to control the spread of methicillin-resistant Staphylococcus aureus
Q93147114	Cost-benefit trade-offs in decision-making and learning
Q35221070	Cost-effective control of plant disease when epidemiological knowledge is incomplete: modelling Bahia bark scaling of citrus
Q40047703	Cost-efficient vaccination protocols for network epidemiology.
Q47173865	Costs of task allocation with local feedback: Effects of colony size and extra workers in social insects and other multi-agent systems.
Q36247450	Could a Neuroscientist Understand a Microprocessor?
Q54977873	Coupled feedback loops maintain synaptic long-term potentiation: A computational model of PKMzeta synthesis and AMPA receptor trafficking.
Q30395823	Coupled information diffusion--pest dynamics models predict delayed benefits of farmer cooperation in pest management programs
Q28914714	Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity
Q34426393	Coupling between catalytic loop motions and enzyme global dynamics
Q27330085	Coupling mechanical deformations and planar cell polarity to create regular patterns in the zebrafish retina
Q35156703	Coupling of lever arm swing and biased Brownian motion in actomyosin
Q92901741	Coupling water fluxes with cell wall mechanics in a multicellular model of plant development
Q89678885	CovCopCan: An efficient tool to detect Copy Number Variation from amplicon sequencing data in inherited diseases and cancer
Q113308678	Covalent docking and molecular dynamics simulations reveal the specificity-shifting mutations Ala237Arg and Ala237Lys in TEM beta-lactamase
Q113309307	Covasim: An agent-based model of COVID-19 dynamics and interventions
Q52596455	Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data.
Q33287192	CpG island mapping by epigenome prediction
Q113309492	CpG island mapping by epigenome prediction
Q27318856	Crawling and Gliding: A Computational Model for Shape-Driven Cell Migration
Q28477387	Crawling cells can close wounds without purse strings or signaling
Q30490367	Creating High-Resolution Multiscale Maps of Human Tissue Using Multi-beam SEM.
Q35819247	Critical Roles of the Direct GABAergic Pallido-cortical Pathway in Controlling Absence Seizures
Q113309362	Critical behaviour of the stochastic Wilson-Cowan model
Q33719502	Critical dynamics in the evolution of stochastic strategies for the iterated prisoner's dilemma
Q93255627	Critical role of deadenylation in regulating poly(A) rhythms and circadian gene expression
Q34758204	Critical role of transient activity of MT1-MMP for ECM degradation in invadopodia
Q35113021	Critical slowing down governs the transition to neuron spiking
Q113308749	Criticality enhances the multilevel reliability of stimulus responses in cortical neural networks
Q28728020	Criticality is an emergent property of genetic networks that exhibit evolvability
Q30375822	Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.
Q113308928	Cross-population coupling of neural activity based on Gaussian process current source densities
Q91581550	Cross-species functional modules link proteostasis to human normal aging
Q97596901	Cross-species regulatory sequence activity prediction
Q35133460	Crossing borders for science
Q34281478	Crossing over...Markov meets Mendel
Q104607090	Crosstalk and ultrasensitivity in protein degradation pathways
Q113308936	Crowd control: Reducing individual estimation bias by sharing biased social information
Q112640739	CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
Q125860030	Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge
Q113309082	Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)
Q62766228	Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning
Q27317050	Cultured Cortical Neurons Can Perform Blind Source Separation According to the Free-Energy Principle
Q126175209	Curated single cell multimodal landmark datasets for R/Bioconductor
Q35746623	Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers
Q33687055	Current estimates for HIV-1 production imply rapid viral clearance in lymphoid tissues
Q21145300	Current practice in software development for computational neuroscience and how to improve it
Q36242469	Customized Regulation of Diverse Stress Response Genes by the Multiple Antibiotic Resistance Activator MarA.
Q100391618	Cyclic transitions between higher order motifs underlie sustained asynchronous spiking in sparse recurrent networks
Q35568915	Cyclin and DNA distributed cell cycle model for GS-NS0 cells
Q100939911	CystAnalyser: A new software tool for the automatic detection and quantification of cysts in Polycystic Kidney and Liver Disease, and other cystic disorders
Q108127382	CytoPy: An autonomous cytometry analysis framework
Q31132744	Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline
Q91089226	Cytoplasmic convection currents and intracellular temperature gradients
Q60054365	Cytoplasmic flows in starfish oocytes are fully determined by cortical contractions
Q34192819	Cytoskeletal signaling: is memory encoded in microtubule lattices by CaMKII phosphorylation?
Q89830488	Cytoskeleton polarity is essential in determining orientational order in basal bodies of multi-ciliated cells
Q51744370	Cytosolic proteins can exploit membrane localization to trigger functional assembly.
Q28469090	DARPP-32 is a robust integrator of dopamine and glutamate signals
Q113309556	DARPP-32 is a robust integrator of dopamine and glutamate signals
Q91508984	DART-ID increases single-cell proteome coverage
Q108126748	DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles
Q113309361	DGCyTOF: Deep learning with graphic cluster visualization to predict cell types of single cell mass cytometry data
Q55092265	DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP.
Q113309521	DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
Q35559885	DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates
Q33280629	DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies
Q113308953	DNA methylation-based classifier and gene expression signatures detect BRCAness in osteosarcoma
Q28480868	DOGS: reaction-driven de novo design of bioactive compounds
Q91899023	DOT: Gene-set analysis by combining decorrelated association statistics
Q91861000	DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data
Q36167690	DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks
Q93011799	Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA
Q38610135	Data driven flexible backbone protein design
Q112560793	Data integration uncovers the metabolic bases of phenotypic variation in yeast
Q28727215	Data sharing in the post-genomic world: the experience of the International Cancer Genome Consortium (ICGC) Data Access Compliance Office (DACO)
Q31133387	Data-Driven Metabolic Pathway Compositions Enhance Cancer Survival Prediction
Q113308429	Data-based stochastic modeling reveals sources of activity bursts in single-cell TGF-β signaling
Q113308480	Data-dependent visualization of biological networks in the web-browser with NDExEdit
Q28542760	Data-derived modeling characterizes plasticity of MAPK signaling in melanoma
Q57454607	Data-driven brain network models differentiate variability across language tasks
Q97553539	Data-driven contact structures: From homogeneous mixing to multilayer networks
Q112615072	Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography
Q34671696	Data-driven modeling of SRC control on the mitochondrial pathway of apoptosis: implication for anticancer therapy optimization
Q113308938	Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients
Q30895756	Data-driven prediction and design of bZIP coiled-coil interactions
Q31159819	Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
Q21563512	Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2
Q35204571	De novo design and experimental characterization of ultrashort self-associating peptides
Q31151038	De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function
Q113308913	De novo protein fold families expand the designable ligand binding site space
Q125345524	De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks
Q33828513	De-novo discovery of differentially abundant transcription factor binding sites including their positional preference
Q113308797	DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics
Q91860987	DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning
Q30405838	Decelerating spread of West Nile virus by percolation in a heterogeneous urban landscape
Q34325475	Deceleration of fusion-fission cycles improves mitochondrial quality control during aging
Q35034156	Deciding not to decide: computational and neural evidence for hidden behavior in sequential choice
Q35069132	Decipher the mechanisms of protein conformational changes induced by nucleotide binding through free-energy landscape analysis: ATP binding to Hsp70.
Q28550223	Deciphering Dimerization Modes of PAS Domains: Computational and Experimental Analyses of the AhR:ARNT Complex Reveal New Insights Into the Mechanisms of AhR Transformation
Q38612613	Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.
Q29029166	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
Q28548411	Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action
Q28607719	Deciphering Transcriptional Dynamics In Vivo by Counting Nascent RNA Molecules
Q113308473	Deciphering clock cell network morphology within the biological master clock, suprachiasmatic nucleus: From the perspective of circadian wave dynamics
Q113309306	Deciphering conformational selectivity in the A2A adenosine G protein-coupled receptor by free energy simulations
Q28473983	Deciphering diseases and biological targets for environmental chemicals using toxicogenomics networks
Q27329853	Deciphering interactions in moving animal groups
Q33280626	Deciphering protein-protein interactions. Part I. Experimental techniques and databases
Q28478059	Deciphering the Arginine-binding preferences at the substrate-binding groove of Ser/Thr kinases by computational surface mapping
Q33760990	Deciphering the code for retroviral integration target site selection
Q113308932	Deciphering the molecular mechanism of the cancer formation by chromosome structural dynamics
Q42339133	Deciphering the regulation of P2X4 receptor channel gating by ivermectin using Markov models
Q53280624	Decision making improves sperm chemotaxis in the presence of noise.
Q113308869	Decision prioritization and causal reasoning in decision hierarchies
Q36233855	Decoding Single Molecule Time Traces with Dynamic Disorder
Q35783768	Decoding Structural Properties of a Partially Unfolded Protein Substrate: En Route to Chaperone Binding
Q46917010	Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition
Q28477653	Decoding complex chemical mixtures with a physical model of a sensor array
Q33354925	Decoding of superimposed traces produced by direct sequencing of heterozygous indels
Q94511905	Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease
Q34220922	Decoding unattended fearful faces with whole-brain correlations: an approach to identify condition-dependent large-scale functional connectivity
Q33521305	Decomposition of gene expression state space trajectories
Q35827226	Deconstructing Interocular Suppression: Attention and Divisive Normalization
Q90262503	Deconvolution of calcium imaging data using marked point processes
Q103744423	Deconvolution of heterogeneous tumor samples using partial reference signals
Q27331480	Deconvolution of the cellular force-generating subsystems that govern cytokinesis furrow ingression
Q93073912	Deconvolving multiplexed protease signatures with substrate reduction and activity clustering
Q46075500	Deconvolving sequence features that discriminate between overlapping regulatory annotations.
Q98508220	Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
Q28484831	Decorrelation of neural-network activity by inhibitory feedback
Q28473043	Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species
Q36146862	Decreases in Gap Junction Coupling Recovers Ca2+ and Insulin Secretion in Neonatal Diabetes Mellitus, Dependent on Beta Cell Heterogeneity and Noise
Q27318476	Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks
Q27334133	Decrypting the sequence of structural events during the gating transition of pentameric ligand-gated ion channels based on an interpolated elastic network model
Q102049185	Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines
Q28544475	Deducing the kinetics of protein synthesis in vivo from the transition rates measured in vitro
Q36182843	Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
Q35971395	Deep Learning for Population Genetic Inference
Q89759224	Deep Learning-driven research for drug discovery: Tackling Malaria
Q36002072	Deep Neural Networks as a Computational Model for Human Shape Sensitivity
Q90095385	Deep attention networks reveal the rules of collective motion in zebrafish
Q64098080	Deep convolutional models improve predictions of macaque V1 responses to natural images
Q60910797	Deep convolutional networks do not classify based on global object shape
Q113309210	Deep geometric representations for modeling effects of mutations on protein-protein binding affinity
Q61818315	Deep image reconstruction from human brain activity
Q113308711	Deep inference of seabird dives from GPS-only records: Performance and generalization properties
Q90123412	Deep learning as a tool for neural data analysis: Speech classification and cross-frequency coupling in human sensorimotor cortex
Q112283647	Deep learning for robust and flexible tracking in behavioral studies for C. elegans
Q113746395	Deep learning prediction of chemical-induced dose-dependent and context-specific multiplex phenotype responses and its application to personalized alzheimer’s disease drug repurposing
Q101568582	Deep learning predicts short non-coding RNA functions from only raw sequence data
Q111508032	Deep learning tools and modeling to estimate the temporal expression of cell cycle proteins from 2D still images
Q34732320	Deep neural networks rival the representation of primate IT cortex for core visual object recognition.
Q91806129	Deep reinforcement learning for the control of microbial co-cultures in bioreactors
Q28546549	Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease
Q27320739	Deep supervised, but not unsupervised, models may explain IT cortical representation
Q113308910	DeepCME: A deep learning framework for computing solution statistics of the chemical master equation
Q113309078	DeepCellState: An autoencoder-based framework for predicting cell type specific transcriptional states induced by drug treatment
Q92751234	DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences
Q61658708	DeepDrug3D: Classification of ligand-binding pockets in proteins with a convolutional neural network
Q112717817	DeepG4: A deep learning approach to predict cell-type specific active G-quadruplex regions
Q99554713	DeepHE: Accurately predicting human essential genes based on deep learning
Q89830540	DeepHiC: A generative adversarial network for enhancing Hi-C data resolution
Q114967145	DeepMIB: User-friendly and open-source software for training of deep learning network for biological image segmentation
Q41702227	DeepPep: Deep proteome inference from peptide profiles.
Q102147760	DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier
Q89505417	DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning
Q59793604	Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
Q104475314	Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation
Q27317021	Defectors Can Create Conditions That Rescue Cooperation
Q30972736	Defining an essence of structure determining residue contacts in proteins
Q27315975	Defining the Product Chemical Space of Monoterpenoid Synthases
Q34075033	Defining the estimated core genome of bacterial populations using a Bayesian decision model
Q34395214	Defining the nature of thermal intermediate in 3 state folding proteins: apoflavodoxin, a study case.
Q29346719	Defining the plasticity of transcription factor binding sites by Deconstructing DNA consensus sequences: the PhoP-binding sites among gamma/enterobacteria
Q21092568	Defrosting the digital library: bibliographic tools for the next generation web.
Q34186932	Degenerate T-cell recognition of peptides on MHC molecules creates large holes in the T-cell repertoire
Q34585649	Delay selection by spike-timing-dependent plasticity in recurrent networks of spiking neurons receiving oscillatory inputs
Q91034759	Delayed feedback embedded in perception-action coordination cycles results in anticipation behavior during synchronized rhythmic action: A dynamical systems approach
Q100446218	Delayed global feedback in the genesis and stability of spatiotemporal excitation patterns in paced biological excitable media
Q27319981	Delayed response and biosonar perception explain movement coordination in trawling bats
Q58617892	Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter
Q112724685	Demonstrating the utility of flexible sequence queries against indexed short reads with FlexTyper
Q35825983	Dendritic Pooling of Noisy Threshold Processes Can Explain Many Properties of a Collision-Sensitive Visual Neuron
Q28541387	Dendritic nonlinearities reduce network size requirements and mediate ON and OFF states of persistent activity in a PFC microcircuit model
Q113309276	Dendritic normalisation improves learning in sparsely connected artificial neural networks
Q27334681	Dendritic spikes amplify the synaptic signal to enhance detection of motion in a simulation of the direction-selective ganglion cell
Q113309418	Density Dependence Triggers Runaway Selection of Reduced Senescence
Q33312853	Density dependence triggers runaway selection of reduced senescence.
Q28304568	Dependence of bacterial chemotaxis on gradient shape and adaptation rate
Q34411825	Dependencies among editing sites in serotonin 2C receptor mRNA.
Q113309652	Dependency Map of Proteins in the Small Ribosomal Subunit
Q21145691	Dependency map of proteins in the small ribosomal subunit
Q34314868	Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling
Q51149221	Deploying digital health data to optimize influenza surveillance at national and local scales.
Q34186894	Depression-biased reverse plasticity rule is required for stable learning at top-down connections
Q92251706	Depressive symptoms are associated with blunted reward learning in social contexts
Q113309544	Deprotonation by Dehydration - The Origin of Ammonium Sensing in the AmtB Channel
Q33273031	Deprotonation by dehydration: the origin of ammonium sensing in the AmtB channel
Q97686101	Depth in convolutional neural networks solves scene segmentation
Q36279966	Depth-dependent flow and pressure characteristics in cortical microvascular networks
Q113308521	Deriving time-concordant event cascades from gene expression data: A case study for Drug-Induced Liver Injury (DILI)
Q113308530	Design and execution of a verification, validation, and uncertainty quantification plan for a numerical model of left ventricular flow after LVAD implantation
Q34407742	Design and implementation of a genomics field trip program aimed at secondary school students
Q113309469	Design of Multi-Specificity in Protein Interfaces
Q35683261	Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences
Q30978112	Design of a trichromatic cone array
Q28914747	Design of multi-specificity in protein interfaces
Q55079996	Design of optimal nonlinear network controllers for Alzheimer's disease.
Q33521297	Design principles for ligand-sensing, conformation-switching ribozymes
Q33432715	Design principles for riboswitch function
Q41923670	Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience
Q33242806	Designing a nanotube using naturally occurring protein building blocks
Q61808462	Designing and running an advanced Bioinformatics and genome analyses course in Tunisia
Q93196178	Designing combination therapies with modeling chaperoned machine learning
Q28473098	Designing focused chemical libraries enriched in protein-protein interaction inhibitors using machine-learning methods
Q30715837	Designing molecular dynamics simulations to shift populations of the conformational states of calmodulin
Q113308500	Designing optimal allocations for cancer screening using queuing network models
Q42685154	Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.
Q92589613	DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data
Q27318702	Detailed Per-residue Energetic Analysis Explains the Driving Force for Microtubule Disassembly
Q30912406	Detailed contact data and the dissemination of Staphylococcus aureus in hospitals
Q28473184	Detailed simulations of cell biology with Smoldyn 2.1
Q91509560	Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang
Q30604699	Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic
Q28550072	Detecting Horizontal Gene Transfer between Closely Related Taxa
Q36209593	Detecting Mild Traumatic Brain Injury Using Resting State Magnetoencephalographic Connectivity
Q35979918	Detecting Presymptomatic Infection Is Necessary to Forecast Major Epidemics in the Earliest Stages of Infectious Disease Outbreaks
Q113309563	Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens
Q30667165	Detecting and removing inconsistencies between experimental data and signaling network topologies using integer linear programming on interaction graphs
Q55105099	Detecting change in stochastic sound sequences.
Q33305006	Detecting coevolution in and among protein domains
Q90159795	Detecting critical slowing down in high-dimensional epidemiological systems
Q96164921	Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers
Q90770096	Detecting distant-homology protein structures by aligning deep neural-network based contact maps
Q113309481	Detecting emerging human transmissibility of avian influenza virus in human households
Q33293162	Detecting emerging transmissibility of avian influenza virus in human households
Q35488841	Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences
Q35067182	Detecting genetic association of common human facial morphological variation using high density 3D image registration
Q92156775	Detecting interaction networks in the human microbiome with conditional Granger causality
Q28469121	Detecting key structural features within highly recombined genes
Q30500104	Detecting network communities: an application to phylogenetic analysis
Q28743231	Detecting remote evolutionary relationships among proteins by large-scale semantic embedding
Q41002933	Detecting similar binding pockets to enable systems polypharmacology
Q27339599	Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screens
Q113309444	Detecting the Coevolution in and among Protein Domains
Q60309395	Detection and analysis of spatiotemporal patterns in brain activity
Q99211778	Detection and segmentation of morphologically complex eukaryotic cells in fluorescence microscopy images via feature pyramid fusion
Q33417634	Detection of alpha-rod protein repeats using a neural network and application to huntingtin.
Q113308708	Detection of focal source and arrhythmogenic substrate from body surface potentials to guide atrial fibrillation ablation
Q27335384	Detection of functional modes in protein dynamics
Q28706279	Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission
Q28535491	Determinants of beat-to-beat variability of repolarization duration in the canine ventricular myocyte: a computational analysis
Q28483736	Determinants of brain cell metabolic phenotypes and energy substrate utilization unraveled with a modeling approach
Q35067163	Determinants of cell-to-cell variability in protein kinase signaling
Q91488462	Determinants of combination GM-CSF immunotherapy and oncolytic virotherapy success identified through in silico treatment personalization
Q60944633	Determinants of drug-target interactions at the single cell level
Q60050731	Determinants of early afterdepolarization properties in ventricular myocyte models
Q33784566	Determinants of heterogeneity, excitation and conduction in the sinoatrial node: a model study
Q30839811	Determinants of protein abundance and translation efficiency in S. cerevisiae
Q34262970	Determinants of sexual network structure and their impact on cumulative network measures
Q30407922	Determinants of the spatiotemporal dynamics of the 2009 H1N1 pandemic in Europe: implications for real-time modelling
Q34468894	Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells
Q64064698	Determination of effective synaptic conductances using somatic voltage clamp
Q33312850	Determination of the processes driving the acquisition of immunity to malaria using a mathematical transmission model
Q113309419	Determination of the processes driving the acquisition of immunity to malaria using a mathematical transmission model
Q31123103	Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data
Q113308689	Determining clinically relevant features in cytometry data using persistent homology
Q33552939	Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning
Q34456070	Determining host metabolic limitations on viral replication via integrated modeling and experimental perturbation
Q34165667	Determining individual variation in growth and its implication for life-history and population processes using the empirical Bayes method
Q98775072	Determining the interaction status and evolutionary fate of duplicated homomeric proteins
Q113309071	Determining travel fluxes in epidemic areas
Q27336176	Deterministic mechanical model of T-killer cell polarization reproduces the wandering of aim between simultaneously engaged targets
Q60310756	Deterministic response strategies in a trial-and-error learning task
Q28550166	Developing a Physiologically-Based Pharmacokinetic Model Knowledgebase in Support of Provisional Model Construction
Q28543374	Developing a molecular roadmap of drug-food interactions
Q42338748	Developing computational biology
Q63246417	Development and validation of influenza forecasting for 64 temperate and tropical countries
Q104468283	Development of a hybrid model for a partially known intracellular signaling pathway through correction term estimation and neural network modeling
Q92718201	Development of a physiologically-based pharmacokinetic pediatric brain model for prediction of cerebrospinal fluid drug concentrations and the influence of meningitis
Q113308873	Development of an experiment-split method for benchmarking the generalization of a PTM site predictor: Lysine methylome as an example
Q33300999	Development of genomic sciences in Mexico: a good start and a long way to go.
Q125343140	Development of hidden Markov modeling method for molecular orientations and structure estimation from high-speed atomic force microscopy time-series images
Q34154447	Developmental maturation of dynamic causal control signals in higher-order cognition: a neurocognitive network model
Q33400323	Developmental robustness by obligate interaction of class B floral homeotic genes and proteins
Q27320081	Developmental self-construction and -configuration of functional neocortical neuronal networks
Q113308544	Developmental shifts in computations used to detect environmental controllability
Q92375631	Developmental trajectory of Caenorhabditis elegans nervous system governs its structural organization
Q101044736	Differences between joint-space and musculoskeletal estimations of metabolic rate time profiles
Q43164335	Differences in Visual-Spatial Input May Underlie Different Compression Properties of Firing Fields for Grid Cell Modules in Medial Entorhinal Cortex
Q34236580	Differences in cell division rates drive the evolution of terminal differentiation in microbes
Q28749490	Differences in nutrient requirements imply a non-linear emergence of leaders in animal groups
Q113309295	Differences in olfactory bulb mitral cell spiking with ortho- and retronasal stimulation revealed by data-driven models
Q28469340	Differences in reactivation of tuberculosis induced from anti-TNF treatments are based on bioavailability in granulomatous tissue
Q113309456	Differences in reactivation of tuberculosis induced from anti-TNF treatments are based on bioavailability in granulomatous tissue
Q28589248	Different Evolutionary Paths to Complexity for Small and Large Populations of Digital Organisms
Q27321450	Different inward and outward conduction mechanisms in NaVMs suggested by molecular dynamics simulations
Q55383292	Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach.
Q27323018	Differential adhesion between moving particles as a mechanism for the evolution of social groups
Q28475444	Differential affinity and catalytic activity of CheZ in E. coli chemotaxis
Q35647731	Differential chromosome conformations as hallmarks of cellular identity revealed by mathematical polymer modeling
Q113309136	Differential contribution to gene expression prediction of histone modifications at enhancers or promoters
Q104514851	Differential effects of propofol and ketamine on critical brain dynamics
Q34629108	Differential expression analysis for pathways
Q113308930	Differential methods for assessing sensitivity in biological models
Q61812003	Differential mobility and local variation in infection attack rate
Q52803302	Differential polarization of cortical pyramidal neuron dendrites through weak extracellular fields.
Q28478889	Differential producibility analysis (DPA) of transcriptomic data with metabolic networks: deconstructing the metabolic response of M. tuberculosis
Q41677043	Differential receptive field organizations give rise to nearly identical neural correlations across three parallel sensory maps in weakly electric fish.
Q91089204	Differential regulatory network-based quantification and prioritization of key genes underlying cancer drug resistance based on time-course RNA-seq data
Q30815465	Differential repression of alternative transcripts: a screen for miRNA targets
Q113309636	Differential repression of alternative transcripts: a screen for miRNA targets
Q89475228	Differential roles of sleep spindles and sleep slow oscillations in memory consolidation
Q64941161	Differential sustained and transient temporal processing across visual streams.
Q42370666	Differential temperature sensitivity of synaptic and firing processes in a neural mass model of epileptic discharges explains heterogeneous response of experimental epilepsy to focal brain cooling.
Q50421863	Differential tissue growth and cell adhesion alone drive early tooth morphogenesis: An ex vivo and in silico study.
Q33707373	Differentially expressed RNA from public microarray data identifies serum protein biomarkers for cross-organ transplant rejection and other conditions
Q57837810	Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp
Q21563495	Differentiating protein-coding and noncoding RNA: challenges and ambiguities
Q94657880	Differentiation of Cytopathic Effects (CPE) induced by influenza virus infection using deep Convolutional Neural Networks (CNN)
Q112063262	Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base
Q27335032	Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm
Q64940035	DigChem: Identification of disease-gene-chemical relationships from Medline abstracts.
Q33815555	Digital atlasing and standardization in the mouse brain
Q113308732	Digital contact tracing and network theory to stop the spread of COVID-19 using big-data on human mobility geolocalization
Q25891612	Digital epidemiology
Q30544297	Digital signal processing reveals circadian baseline oscillation in majority of mammalian genes
Q114054778	Digital twin predicting diet response before and after long-term fasting
Q57794086	Dilution and titration of cell-cycle regulators may control cell size in budding yeast
Q90589896	Dimensional reduction in networks of non-Markovian spiking neurons: Equivalence of synaptic filtering and heterogeneous propagation delays
Q96223770	Dimensional reduction of emergent spatiotemporal cortical dynamics via a maximum entropy moment closure
Q33326986	Dimensionality and dynamics in the behavior of C. elegans
Q91828633	Dimensionality in recurrent spiking networks: Global trends in activity and local origins in connectivity
Q28392405	Dimensionality of carbon nanomaterials determines the binding and dynamics of amyloidogenic peptides: multiscale theoretical simulations
Q113308474	Dimensionality reduction of longitudinal ’omics data using modern tensor factorizations
Q93206852	Dimensionality, information and learning in prefrontal cortex
Q90218668	Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons
Q113309298	Dimeric allostery mechanism of the plant circadian clock photoreceptor ZEITLUPE
Q28472340	Diminished self-chaperoning activity of the DeltaF508 mutant of CFTR results in protein misfolding
Q36124129	Direct Correlation between Motile Behavior and Protein Abundance in Single Cells
Q35831950	Direct Measurements of Local Coupling between Myosin Molecules Are Consistent with a Model of Muscle Activation
Q89972110	Direct coupling analysis of epistasis in allosteric materials
Q33308258	Direct inference of SNP heterozygosity rates and resolution of LOH detection
Q91089241	Direct prediction of regulatory elements from partial data without imputation
Q113308520	Direct reciprocity between individuals that use different strategy spaces
Q28540885	Direct solution of the Chemical Master Equation using quantized tensor trains
Q33466798	Directed mammalian gene regulatory networks using expression and comparative genomic hybridization microarray data from radiation hybrids
Q92498010	Directed migration shapes cooperation in spatial ecological public goods games
Q33419869	Directing experimental biology: a case study in mitochondrial biogenesis
Q98902129	Direction-selective motion discrimination by traveling waves in visual cortex
Q34629113	Directional summation in non-direction selective retinal ganglion cells
Q21145372	Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures
Q58789775	Discerning evolutionary trends in post-translational modification and the effect of intrinsic disorder: Analysis of methylation, acetylation and ubiquitination sites in human proteins
Q113308816	Discovering adaptation-capable biological network structures using control-theoretic approaches
Q28546587	Discovering anti-platelet drug combinations with an integrated model of activator-inhibitor relationships, activator-activator synergies and inhibitor-inhibitor synergies
Q33886691	Discovering biological progression underlying microarray samples
Q33426376	Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines
Q112717992	Discovering differential genome sequence activity with interpretable and efficient deep learning
Q99554666	Discovering functional sequences with RELICS, an analysis method for CRISPR screens
Q113308446	Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning
Q33279806	Discovering motifs in ranked lists of DNA sequences
Q34446608	Discovering relations between mind, brain, and mental disorders using topic mapping
Q33330862	Discovering sequence motifs with arbitrary insertions and deletions
Q113308568	Discovering sparse control strategies in neural activity
Q33512517	Discovering the phylodynamics of RNA viruses
Q33967929	Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data
Q33516061	Discovery and annotation of functional chromatin signatures in the human genome
Q28547862	Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling
Q27316994	Discovery of Influenza A Virus Sequence Pairs and Their Combinations for Simultaneous Heterosubtypic Targeting that Hedge against Antiviral Resistance
Q91596417	Discovery of hierarchical representations for efficient planning
Q30884245	Discovery of regulatory elements is improved by a discriminatory approach
Q35801659	Discrete Element Framework for Modelling Extracellular Matrix, Deformable Cells and Subcellular Components
Q113309027	Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes
Q113308503	Discrete modeling for integration and analysis of large-scale signaling networks
Q96121288	Discriminating between negative cooperativity and ligand binding to independent sites using pre-equilibrium properties of binding curves
Q34611038	Discriminating external and internal causes for heading changes in freely flying Drosophila
Q113308944	Discriminative feature of cells characterizes cell populations of interest by a small subset of genes
Q35654280	Disease Interventions Can Interfere with One Another through Disease-Behaviour Interactions
Q36077496	Disease Surveillance on Complex Social Networks.
Q96121087	Disease evolution in reaction networks: Implications for a diagnostic problem
Q91650431	Disease gene prediction for molecularly uncharacterized diseases
Q34468881	Disease prevention versus data privacy: using landcover maps to inform spatial epidemic models
Q33506605	Disease-aging network reveals significant roles of aging genes in connecting genetic diseases
Q30422189	Disease-associated mutations disrupt functionally important regions of intrinsic protein disorder
Q47561133	Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors
Q114596582	Disentangling choice value and choice conflict in sequential decisions under risk
Q21563484	Disentangling direct from indirect co-evolution of residues in protein alignments
Q92718191	Disentangling juxtacrine from paracrine signalling in dynamic tissue
Q35612549	Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling
Q33893720	Disentangling the roles of approach, activation and valence in instrumental and pavlovian responding
Q28474212	Disordered flanks prevent peptide aggregation
Q34679604	Disrupted calcium release as a mechanism for atrial alternans associated with human atrial fibrillation
Q112711942	Dissecting cascade computational components in spiking neural networks
Q43055413	Dissecting dynamic genetic variation that controls temporal gene response in yeast
Q33519501	Dissecting early differentially expressed genes in a mixture of differentiating embryonic stem cells
Q112279228	Dissecting mutational allosteric effects in alkaline phosphatases associated with different Hypophosphatasia phenotypes: An integrative computational investigation
Q125341713	Dissecting peripheral protein-membrane interfaces
Q113308706	Dissecting recurrent waves of pertussis across the boroughs of London
Q35623397	Dissecting the calcium-induced differentiation of human primary keratinocytes stem cells by integrative and structural network analyses
Q104799585	Dissecting the links between reward and loss, decision-making, and self-reported affect using a computational approach
Q34625333	Dissection of regulatory networks that are altered in disease via differential co-expression
Q57022864	Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks
Q24811838	Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks
Q113308834	Dissociable influences of reward and punishment on adaptive cognitive control
Q41327297	Dissociating error-based and reinforcement-based loss functions during sensorimotor learning
Q33429053	Dissociating variability and effort as determinants of coordination
Q30009560	Distal loop flexibility of a regulatory domain modulates dynamics and activity of C-terminal SRC kinase (csk)
Q28547254	Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron
Q34845227	Distinct allelic patterns of nanog expression impart embryonic stem cell population heterogeneity
Q33383211	Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
Q28714173	Distinct neurogenomic states in basal ganglia subregions relate differently to singing behavior in songbirds
Q46169119	Distinct prediction errors in mesostriatal circuits of the human brain mediate learning about the values of both states and actions: evidence from high-resolution fMRI.
Q33330864	Distinct timing mechanisms produce discrete and continuous movements
Q34697766	Distinct types of disorder in the human proteome: functional implications for alternative splicing
Q28551715	Distinctive Behaviors of Druggable Proteins in Cellular Networks
Q28550711	Distinguishing Antimicrobial Models with Different Resistance Mechanisms via Population Pharmacodynamic Modeling
Q113308579	Distinguishing excess mutations and increased cell death based on variant allele frequencies
Q113309480	Distributed Representations Accelerate Evolution of Adaptive Behaviours
Q33519513	Distributed dynamical computation in neural circuits with propagating coherent activity patterns
Q33293150	Distributed representations accelerate evolution of adaptive behaviours
Q42918160	Distribution of the fittest individuals and the rate of Muller's ratchet in a model with overlapping generations
Q33900826	Distributions of transposable elements reveal hazardous zones in mammalian introns
Q34671734	Divergence of mammalian higher order chromatin structure is associated with developmental loci
Q52314285	Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse.
Q113308951	Diverse processing underlying frequency integration in midbrain neurons of barn owls
Q44801223	Diverse type 2 diabetes genetic risk factors functionally converge in a phenotype-focused gene network.
Q35772715	Diversity Waves in Collapse-Driven Population Dynamics
Q40131922	Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models.
Q34395221	Diversity and noise effects in a model of homeostatic regulation of the sleep-wake cycle
Q33687042	Diversity and plasticity of Th cell types predicted from regulatory network modelling
Q113308821	Diversity of synaptic protein complexes as a function of the abundance of their constituent proteins: A modeling approach
Q34565863	Divide and conquer: functional segregation of synaptic inputs by astrocytic microdomains could alleviate paroxysmal activity following brain trauma
Q33434439	Divisive gain modulation with dynamic stimuli in integrate-and-fire neurons
Q35758839	Do Brain Networks Evolve by Maximizing Their Information Flow Capacity?
Q36207963	Do Vascular Networks Branch Optimally or Randomly across Spatial Scales?
Q27325857	Do ants need to estimate the geometrical properties of trail bifurcations to find an efficient route? A swarm robotics test bed
Q33640108	Do humans optimally exploit redundancy to control step variability in walking?
Q91982816	DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images
Q28552950	Does High-Dose Antimicrobial Chemotherapy Prevent the Evolution of Resistance?
Q28474346	Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations?
Q113308724	Does plasmid-based beta-lactam resistance increase E. coli infections: Modelling addition and replacement mechanisms
Q34192808	Does sex speed up evolutionary rate and increase biodiversity?
Q33967924	Does the potential for chaos constrain the embryonic cell-cycle oscillator?
Q42840266	Dog as an outgroup to human and mouse
Q38605706	Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing
Q58727790	Domes and cones: Adhesion-induced fission of membranes by ESCRT proteins
Q30472437	Dominant glint based prey localization in horseshoe bats: a possible strategy for noise rejection
Q111150156	Dominating lengthscales of zebrafish collective behaviour
Q100310688	Domino-like transient dynamics at seizure onset in epilepsy
Q47123212	Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator.
Q36215993	Dopamine Neurons Change the Type of Excitability in Response to Stimuli
Q103748447	Dopamine release, diffusion and uptake: A computational model for synaptic and volume transmission
Q55361652	Dopamine transporter oligomerization involves the scaffold domain, but spares the bundle domain.
Q34126224	Dopamine, affordance and active inference
Q58704936	Dorsal anterior cingulate-brainstem ensemble as a reinforcement meta-learner
Q113309542	Dose Response Relationship in Anti-Stress Gene Regulatory Networks
Q28469152	Dose response relationship in anti-stress gene regulatory networks
Q113309031	Dose-dependent thresholds of dexamethasone destabilize CAR T-cell treatment efficacy
Q36339944	Dose-response relationships for environmentally mediated infectious disease transmission models
Q28473670	Dose-to-duration encoding and signaling beyond saturation in intracellular signaling networks
Q35827310	Doubly Bayesian Analysis of Confidence in Perceptual Decision-Making
Q89919197	Doubting what you already know: Uncertainty regarding state transitions is associated with obsessive compulsive symptoms
Q113308681	Dowker complex based machine learning (DCML) models for protein-ligand binding affinity prediction
Q31144437	Dread and the disvalue of future pain
Q27882968	Drivers of Inter-individual Variation in Dengue Viral Load Dynamics
Q93045919	Drosophila melanogaster grooming possesses syntax with distinct rules at different temporal scales
Q92156719	Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancer
Q28475474	Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors
Q28475676	Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis
Q28477930	Drug discovery using chemical systems biology: weak inhibition of multiple kinases may contribute to the anti-cancer effect of nelfinavir
Q28475693	Drug off-target effects predicted using structural analysis in the context of a metabolic network model
Q113308397	Drug repurposing based on a quantum-inspired method versus classical fingerprinting uncovers potential antivirals against SARS-CoV-2
Q28473451	Drug-class specific impact of antivirals on the reproductive capacity of HIV
Q28475443	Drug-induced regulation of target expression
Q113309107	Drug-induced resistance evolution necessitates less aggressive treatment
Q98471564	Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones
Q103828806	Drug2ways: Reasoning over causal paths in biological networks for drug discovery
Q34625325	Druggable protein interaction sites are more predisposed to surface pocket formation than the rest of the protein surface
Q33628855	Dual coding with STDP in a spiking recurrent neural network model of the hippocampus
Q34625280	Dual coordination of post translational modifications in human protein networks
Q34795388	Dual delayed feedback provides sensitivity and robustness to the NF-κB signaling module
Q28648327	Dual dimensionality reduction reveals independent encoding of motor features in a muscle synergy for insect flight control
Q34671708	Dual process for intentional and reactive decisions
Q28485153	Durable resistance to crop pathogens: an epidemiological framework to predict risk under uncertainty
Q35822949	DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics
Q35968819	Dynamic Allostery Mediated by a Conserved Tryptophan in the Tec Family Kinases
Q27318433	Dynamic Allostery of the Catabolite Activator Protein Revealed by Interatomic Forces
Q36182026	Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4.
Q113309088	Dynamic Electrode-to-Image (DETI) mapping reveals the human brain’s spatiotemporal code of visual information
Q35783671	Dynamic Integration of Value Information into a Common Probability Currency as a Theory for Flexible Decision Making
Q36269531	Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression
Q27488822	Dynamic Modeling of Vaccinating Behavior as a Function of Individual Beliefs
Q27316645	Dynamic Modelling Reveals 'Hotspots' on the Pathway to Enzyme-Substrate Complex Formation
Q35872510	Dynamic Network Drivers of Seizure Generation, Propagation and Termination in Human Neocortical Epilepsy
Q36168968	Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells
Q35839957	Dynamic Redox Regulation of IL-4 Signaling
Q30378356	Dynamic Reweighting of Auditory Modulation Filters.
Q38265865	Dynamic alignment models for neural coding
Q30914370	Dynamic allostery in the methionine repressor revealed by force distribution analysis
Q30441717	Dynamic analysis of integrated signaling, metabolic, and regulatory networks
Q91668275	Dynamic balance between vesicle transport and microtubule growth enables neurite outgrowth
Q104791381	Dynamic bistable switches enhance robustness and accuracy of cell cycle transitions
Q123008085	Dynamic causal modelling shows a prominent role of local inhibition in alpha power modulation in higher visual cortex
Q35022277	Dynamic change of global and local information processing in propofol-induced loss and recovery of consciousness
Q33388192	Dynamic changes in protein functional linkage networks revealed by integration with gene expression data
Q30815482	Dynamic changes in subgraph preference profiles of crucial transcription factors
Q54956970	Dynamic combination of sensory and reward information under time pressure.
Q36337951	Dynamic compensation, parameter identifiability, and equivariances
Q35238378	Dynamic conformational change regulates the protein-DNA recognition: an investigation on binding of a Y-family polymerase to its target DNA.
Q27333962	Dynamic conformational changes in munc18 prevent syntaxin binding
Q28484775	Dynamic control of selectivity in the ubiquitination pathway revealed by an ASP to GLU substitution in an intra-molecular salt-bridge network
Q33392723	Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression
Q112568106	Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants
Q55186610	Dynamic cues for whisker-based object localization: An analytical solution to vibration during active whisker touch.
Q36384952	Dynamic decomposition of spatiotemporal neural signals
Q92552701	Dynamic distribution decomposition for single-cell snapshot time series identifies subpopulations and trajectories during iPSC reprogramming
Q113308933	Dynamic divisive normalization circuits explain and predict change detection in monkey area MT
Q34211461	Dynamic effective connectivity of inter-areal brain circuits
Q34167824	Dynamic energy landscapes of riboswitches help interpret conformational rearrangements and function
Q98567221	Dynamic estimation of auditory temporal response functions via state-space models with Gaussian mixture process noise
Q27324430	Dynamic excitatory and inhibitory gain modulation can produce flexible, robust and optimal decision-making
Q64068086	Dynamic filopodial forces induce accumulation, damage, and plastic remodeling of 3D extracellular matrices
Q34566228	Dynamic finite size effects in spiking neural networks
Q34845256	Dynamic fluctuations provide the basis of a conformational switch mechanism in apo cyclic AMP receptor protein
Q113308774	Dynamic inference of cell developmental complex energy landscape from time series single-cell transcriptomic data
Q89759263	Dynamic integration of forward planning and heuristic preferences during multiple goal pursuit
Q96432020	Dynamic interactions of influenza viruses in Hong Kong during 1998-2018
Q113308883	Dynamic maximum entropy provides accurate approximation of structured population dynamics
Q27321289	Dynamic mechanisms of neocortical focal seizure onset
Q94606041	Dynamic metabolic adaptation can promote species coexistence in competitive communities
Q36393037	Dynamic metabolic modeling of heterotrophic and mixotrophic microalgal growth on fermentative wastes
Q27325533	Dynamic modeling of cell migration and spreading behaviors on fibronectin coated planar substrates and micropatterned geometries
Q27321555	Dynamic modelling of pathways to cellular senescence reveals strategies for targeted interventions
Q113309389	Dynamic modelling of the PI3K/MTOR signalling network uncovers biphasic dependence of mTORC1 activity on the mTORC2 subunit SIN1
Q28732306	Dynamic modelling under uncertainty: the case of Trypanosoma brucei energy metabolism
Q113308895	Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis
Q34693133	Dynamic phenotypic clustering in noisy ecosystems
Q27330899	Dynamic prestress in a globular protein
Q92562021	Dynamic properties of internal noise probed by modulating binocular rivalry
Q27324055	Dynamic rendering of the heterogeneous cell response to anticancer treatments
Q113309526	Dynamic simulations on the Arachidonic Acid Metabolic Network
Q28221357	Dynamic simulations on the arachidonic acid metabolic network
Q33951918	Dynamic structure formation of peripheral membrane proteins
Q35950828	Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies
Q35694454	Dynamical Localization of DivL and PleC in the Asymmetric Division Cycle of Caulobacter crescentus: A Theoretical Investigation of Alternative Models
Q35772573	Dynamical Organization of Syntaxin-1A at the Presynaptic Active Zone
Q113309644	Dynamical Principles of Two-component Genetic Oscillators
Q30557290	Dynamical adaptation in photoreceptors
Q60944620	Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern
Q34079139	Dynamical and structural analysis of a T cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia
Q47101468	Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation
Q64246766	Dynamical differential expression (DyDE) reveals the period control mechanisms of the Arabidopsis circadian oscillator
Q90743017	Dynamical model of the CLC-2 ion channel reveals conformational changes associated with selectivity-filter gating
Q27331530	Dynamical modeling of collective behavior from pigeon flight data: flock cohesion and dispersion
Q125341830	Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells
Q95303218	Dynamical network analysis reveals key microRNAs in progressive stages of lung cancer
Q100523107	Dynamical persistence in high-diversity resource-consumer communities
Q33239377	Dynamical principles of two-component genetic oscillators
Q28477275	Dynamically-driven inactivation of the catalytic machinery of the SARS 3C-like protease by the N214A mutation on the extra domain
Q33553413	Dynamics and control of diseases in networks with community structure
Q46259503	Dynamics and heterogeneity of brain damage in multiple sclerosis
Q27332992	Dynamics and mechanical stability of the developing dorsoventral organizer of the wing imaginal disc
Q33345245	Dynamics and potential impact of the immune response to chronic myelogenous leukemia
Q113309074	Dynamics and turnover of memory CD8 T cell responses following yellow fever vaccination
Q35490013	Dynamics from seconds to hours in Hodgkin-Huxley model with time-dependent ion concentrations and buffer reservoirs
Q27316501	Dynamics of Cell Ensembles on Adhesive Micropatterns: Bridging the Gap between Single Cell Spreading and Collective Cell Migration
Q34845353	Dynamics of SIN asymmetry establishment.
Q30252615	Dynamics of adaptive immunity against phage in bacterial populations.
Q35145051	Dynamics of cellular responses to radiation
Q33352680	Dynamics of immune escape during HIV/SIV infection
Q39535374	Dynamics of mutant cells in hierarchical organized tissues
Q35737602	Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast
Q30884210	Dynamics of trimming the content of face representations for categorization in the brain
Q34504769	Dynamics on networks: the role of local dynamics and global networks on the emergence of hypersynchronous neural activity
Q36306119	Dynamics robustness of cascading systems
Q36328102	Dysfunctions of the basal ganglia-cerebellar-thalamo-cortical system produce motor tics in Tourette syndrome
Q91955383	Dysregulated biodynamics in metabolic attractor systems precede the emergence of amyotrophic lateral sclerosis
Q91005490	EAGLE: An algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interactions
Q64062624	EAT-Rice: A predictive model for flanking gene expression of T-DNA insertion activation-tagged rice mutants by machine learning approaches
Q30369391	ECOD: an evolutionary classification of protein domains.
Q36037821	EGFR Signal-Network Reconstruction Demonstrates Metabolic Crosstalk in EMT.
Q90095344	EMULSION: Transparent and flexible multiscale stochastic models in human, animal and plant epidemiology
Q35822716	ENCORE: Software for Quantitative Ensemble Comparison.
Q36355105	ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time.
Q27318293	Early Characterization of the Severity and Transmissibility of Pandemic Influenza Using Clinical Episode Data from Multiple Populations
Q35964579	Early Transcriptome Signatures from Immunized Mouse Dendritic Cells Predict Late Vaccine-Induced T-Cell Responses
Q36269588	Early and Real-Time Detection of Seasonal Influenza Onset.
Q98576469	Early exposure to broadly neutralizing antibodies may trigger a dynamical switch from progressive disease to lasting control of SHIV infection
Q89759208	Early prediction of antigenic transitions for influenza A/H3N2
Q96578038	Early transmission of sensitive strain slows down emergence of drug resistance in Plasmodium vivax
Q34154436	Early warning signals for critical transitions: a generalized modeling approach
Q95943120	Early warning signals in motion inference
Q28822072	Eco-evolutionary Model of Rapid Phenotypic Diversification in Species-Rich Communities
Q92689009	Eco-evolutionary agriculture: Host-pathogen dynamics in crop rotations
Q35156891	Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale
Q35069150	Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota
Q28661136	Education in computational biology today and tomorrow
Q30400455	Effect of 1918 PB1-F2 expression on influenza A virus infection kinetics
Q55100758	Effect of Ca2+ on the promiscuous target-protein binding of calmodulin.
Q36157560	Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein
Q36010921	Effect of Interaction between Chromatin Loops on Cell-to-Cell Variability in Gene Expression
Q36184330	Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue
Q35112649	Effect of dedifferentiation on time to mutation acquisition in stem cell-driven cancers
Q38670039	Effect of depth information on multiple-object tracking in three dimensions: A probabilistic perspective.
Q35400342	Effect of global cardiac ischemia on human ventricular fibrillation: insights from a multi-scale mechanistic model of the human heart
Q98223307	Effect of magnitude and variability of energy of activation in multisite ultrasensitive biochemical processes
Q36263760	Effect of mutation mechanisms on variant composition and distribution in Caenorhabditis elegans
Q34197828	Effect of network architecture on synchronization and entrainment properties of the circadian oscillations in the suprachiasmatic nucleus
Q28477325	Effect of promoter architecture on the cell-to-cell variability in gene expression
Q34720263	Effect of regulatory architecture on broad versus narrow sense heritability
Q36253793	Effect of the Latent Reservoir on the Evolution of HIV at the Within- and Between-Host Levels
Q33621017	Effect of transcription factor resource sharing on gene expression noise
Q35994698	Effective Design of Multifunctional Peptides by Combining Compatible Functions
Q28536143	Effective harmonic potentials: insights into the internal cooperativity and sequence-specificity of protein dynamics
Q113309099	Effective population size for culturally evolving traits
Q30972834	Effective reduced diffusion-models: a data driven approach to the analysis of neuronal dynamics
Q34005249	Effective stimuli for constructing reliable neuron models
Q62858301	Effectiveness of Ultra-Low Volume insecticide spraying to prevent dengue in a non-endemic metropolitan area of Brazil
Q36020766	Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection
Q36267581	Effects of FGFR2 kinase activation loop dynamics on catalytic activity
Q36329987	Effects of contact structure on the transient evolution of HIV virulence.
Q27332069	Effects of electrical and structural remodeling on atrial fibrillation maintenance: a simulation study
Q54963972	Effects of growth rate, cell size, motion, and elemental stoichiometry on nutrient transport kinetics.
Q33932789	Effects of heterogeneous and clustered contact patterns on infectious disease dynamics
Q112295448	Effects of incomplete inter-hospital network data on the assessment of transmission dynamics of hospital-acquired infections
Q34557983	Effects of ligand binding on the mechanical properties of ankyrin repeat protein gankyrin
Q28474762	Effects of macromolecular crowding on protein conformational changes
Q93011770	Effects of persistent sodium current blockade in respiratory circuits depend on the pharmacological mechanism of action and network dynamics
Q28474766	Effects of ploidy and recombination on evolution of robustness in a model of the segment polarity network
Q99411799	Effects of spatial heterogeneity on bacterial genetic circuits
Q52561266	Effects of spatiotemporal HSV-2 lesion dynamics and antiviral treatment on the risk of HIV-1 acquisition.
Q35165632	Effects of specular highlights on perceived surface convexity
Q33543167	Effects of transcriptional pausing on gene expression dynamics
Q35203892	Efficacy of synaptic inhibition depends on multiple, dynamically interacting mechanisms implicated in chloride homeostasis
Q33271739	Efficiency and cost of economical brain functional networks.
Q34341329	Efficiency and power as a function of sequence coverage, SNP array density, and imputation
Q92340001	Efficiency of protein synthesis inhibition depends on tRNA and codon compositions
Q33290827	Efficiency, selectivity, and robustness of nucleocytoplasmic transport
Q30000049	Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data
Q41333026	Efficient "communication through coherence" requires oscillations structured to minimize interference between signals
Q27486436	Efficient Algorithms for Probing the RNA Mutation Landscape
Q113308490	Efficient Bayesian inference for mechanistic modelling with high-throughput data
Q114596585	Efficient Bayesian inference for stochastic agent-based models
Q28547543	Efficient Characterization of Parametric Uncertainty of Complex (Bio)chemical Networks
Q36008382	Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes
Q35778745	Efficient Optimization of Stimuli for Model-Based Design of Experiments to Resolve Dynamical Uncertainty
Q113308884	Efficient ReML inference in variance component mixed models using a Min-Max algorithm
Q36113991	Efficient Reconstruction of Predictive Consensus Metabolic Network Models.
Q36240474	Efficient Switches in Biology and Computer Science
Q92240457	Efficient algorithms to discover alterations with complementary functional association in cancer
Q38618281	Efficient and accurate causal inference with hidden confounders from genome-transcriptome variation data
Q94445540	Efficient and flexible representation of higher-dimensional cognitive variables with grid cells
Q113238618	Efficient and robust coding in heterogeneous recurrent networks
Q64930843	Efficient assembly and long-term stability of defensive microbiomes via private resources and community bistability.
Q99589369	Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination
Q47154216	Efficient encoding of motion is mediated by gap junctions in the fly visual system
Q28474520	Efficient network reconstruction from dynamical cascades identifies small-world topology of neuronal avalanches
Q64247115	Efficient neural decoding of self-location with a deep recurrent network
Q21563502	Efficient olfactory coding in the pheromone receptor neuron of a moth
Q34916507	Efficient partitioning of memory systems and its importance for memory consolidation
Q58084790	Efficient pedigree recording for fast population genetics simulation
Q33565516	Efficient physical embedding of topologically complex information processing networks in brains and computer circuits
Q34341320	Efficient reverse-engineering of a developmental gene regulatory network
Q99707452	Efficient sensory coding of multidimensional stimuli
Q91439263	Efficient sentinel surveillance strategies for preventing epidemics on networks
Q34186889	Efficient sparse coding in early sensory processing: lessons from signal recovery
Q113308923	Elastic energy savings and active energy cost in a simple model of running
Q34481809	Elastic energy storage and radial forces in the myofilament lattice depend on sarcomere length
Q113308498	Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow
Q27317712	Elastohydrodynamics and Kinetics of Protein Patterning in the Immunological Synapse
Q35204608	Electric imaging through evolution, a modeling study of commonalities and differences
Q98169801	Electrical coupling controls dimensionality and chaotic firing of inferior olive neurons
Q50047288	Electrical receptive fields of retinal ganglion cells: Influence of presynaptic neurons.
Q46005560	Electrical stimulus artifact cancellation and neural spike detection on large multi-electrode arrays.
Q64106571	Electrical synapses regulate both subthreshold integration and population activity of principal cells in response to transient inputs within canonical feedforward circuits
Q35075076	Electrodiffusive model for astrocytic and neuronal ion concentration dynamics
Q27328974	Electron transfer interactome of cytochrome C
Q27316154	Electrophysiology of Heart Failure Using a Rabbit Model: From the Failing Myocyte to Ventricular Fibrillation
Q35810665	Electrosensory Midbrain Neurons Display Feature Invariant Responses to Natural Communication Stimuli
Q97092989	Electrostatic and bending energies predict staggering and splaying in nonmuscle myosin II minifilaments
Q28535332	Electrostatically accelerated encounter and folding for facile recognition of intrinsically disordered proteins
Q33325890	Electrotonic signals along intracellular membranes may interconnect dendritic spines and nucleus
Q92967118	Elementary Growth Modes provide a molecular description of cellular self-fabrication
Q113308755	Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth
Q51732650	Eleven quick tips for architecting biomedical informatics workflows with cloud computing.
Q117012146	Eleven quick tips for data cleaning and feature engineering
Q52591854	Eleven quick tips for finding research data.
Q52622111	Eleven quick tips for running an interdisciplinary short course for new graduate students.
Q60302529	Eleven quick tips to build a usable REST API for life sciences
Q113308856	Elucidating multi-input processing 3-node gene regulatory network topologies capable of generating striped gene expression patterns
Q113309206	Elucidating relationships between P.falciparum prevalence and measures of genetic diversity with a combined genetic-epidemiological model of malaria
Q113309472	Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis
Q33294653	Elucidating the altered transcriptional programs in breast cancer using independent component analysis
Q35954176	Elucidation of Genetic Interactions in the Yeast GATA-Factor Network Using Bayesian Model Selection
Q27318807	Elucidation of Ligand-Dependent Modulation of Disorder-Order Transitions in the Oncoprotein MDM2
Q36278388	Elucidation of molecular kinetic schemes from macroscopic traces using system identification.
Q33356599	Embedding mRNA stability in correlation analysis of time-series gene expression data
Q34625314	Embedding responses in spontaneous neural activity shaped through sequential learning
Q35301357	Embodied choice: how action influences perceptual decision making
Q52577967	EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos.
Q35556683	Embryonic stem cell specific "master" replication origins at the heart of the loss of pluripotency
Q113308898	Emergence and fragmentation of the alpha-band driven by neuronal network dynamics
Q92518082	Emergence and suppression of cooperation by action visibility in transparent games
Q42416112	Emergence of Functional Specificity in Balanced Networks with Synaptic Plasticity
Q113309448	Emergence of Recombinant Forms of HIV: Dynamics and Scaling
Q35827044	Emergence of Shared Intentionality Is Coupled to the Advance of Cumulative Culture
Q35692017	Emergence of Slow-Switching Assemblies in Structured Neuronal Networks
Q34276984	Emergence of a small-world functional network in cultured neurons.
Q27321223	Emergence of assortative mixing between clusters of cultured neurons
Q96770605	Emergence of cooperative bistability and robustness of gene regulatory networks
Q113309227	Emergence of directional bias in tau deposition from axonal transport dynamics
Q33383218	Emergence of functional hierarchy in a multiple timescale neural network model: a humanoid robot experiment
Q27323993	Emergence of metastable state dynamics in interconnected cortical networks with propagation delays
Q33250082	Emergence of protein fold families through rational design
Q113309612	Emergence of protein fold families through rational design
Q28469341	Emergence of recombinant forms of HIV: dynamics and scaling
Q92496468	Emergence of social inequality in the spatial harvesting of renewable public goods
Q33545212	Emergence of spatial structure in cell groups and the evolution of cooperation
Q59126558	Emergence of spontaneous assembly activity in developing neural networks without afferent input
Q21145326	Emergence of switch-like behavior in a large family of simple biochemical networks
Q34468874	Emergence of the mitochondrial reticulum from fission and fusion dynamics
Q113309546	Emergent Dynamics of Thymocyte Development and Lineage Determination
Q31044416	Emergent behaviors from a cellular automaton model for invasive tumor growth in heterogeneous microenvironments
Q35200847	Emergent biosynthetic capacity in simple microbial communities
Q64927131	Emergent decision-making behaviour and rhythm generation in a computational model of the ventromedial nucleus of the hypothalamus.
Q27339557	Emergent dynamics of thymocyte development and lineage determination
Q58729144	Emergent mechanics of actomyosin drive punctuated contractions and shape network morphology in the cell cortex
Q98169762	Emergent neutrality in consumer-resource dynamics
Q33521259	Emergent patterns of social affiliation in primates, a model
Q113309126	Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia
Q27336767	Emergent synchronous bursting of oxytocin neuronal network
Q27319547	Emergent systems energy laws for predicting myosin ensemble processivity
Q27318646	Emerging Object Representations in the Visual System Predict Reaction Times for Categorization
Q34778449	Emotional valence and the free-energy principle
Q104139293	Empirical model for short-time prediction of COVID-19 spreading
Q33303443	Empirical multiscale networks of cellular regulation
Q91728898	Enchained growth and cluster dislocation: A possible mechanism for microbiota homeostasis
Q27318780	Encoder-decoder optimization for brain-computer interfaces
Q36223655	Encoding in Balanced Networks: Revisiting Spike Patterns and Chaos in Stimulus-Driven Systems
Q30444851	Encoding of natural sounds at multiple spectral and temporal resolutions in the human auditory cortex
Q27336259	Encoding of naturalistic stimuli by local field potential spectra in networks of excitatory and inhibitory neurons
Q30993496	Encoding of spatio-temporal input characteristics by a CA1 pyramidal neuron model
Q113309218	Encoding time in neural dynamic regimes with distinct computational tradeoffs
Q64082044	Endemicity and prevalence of multipartite viruses under heterogeneous between-host transmission
Q34961709	Endogenous cholinergic inputs and local circuit mechanisms govern the phasic mesolimbic dopamine response to nicotine.
Q28475952	Endothelial cell capture of heparin-binding growth factors under flow
Q93045891	Energetic costs of cellular and therapeutic control of stochastic mitochondrial DNA populations
Q34229571	Energetic selection of topology in ferredoxins
Q91034710	Energetics of optimal undulatory swimming organisms
Q35654096	Energy Efficient Sparse Connectivity from Imbalanced Synaptic Plasticity Rules
Q35361704	Energy landscape of all-atom protein-protein interactions revealed by multiscale enhanced sampling
Q35582834	Energy landscape reveals that the budding yeast cell cycle is a robust and adaptive multi-stage process
Q92416595	Energy-efficient information transfer at thalamocortical synapses
Q21145338	Energy-information trade-offs between movement and sensing
Q113308896	Engaging biological oscillators through second messenger pathways permits emergence of a robust gastric slow-wave during peristalsis
Q34824981	Engineering a more thermostable blue light photo receptor Bacillus subtilis YtvA LOV domain by a computer aided rational design method
Q113309069	Engineering gene overlaps to sustain genetic constructs in vivo
Q118211085	Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP)
Q98390198	Engineering recurrent neural networks from task-relevant manifolds and dynamics
Q35933206	Enhanced Sensitivity to Rapid Input Fluctuations by Nonlinear Threshold Dynamics in Neocortical Pyramidal Neurons
Q91982856	Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models
Q35151724	Enhanced methods for local ancestry assignment in sequenced admixed individuals
Q126510525	Enhanced perfusion following exposure to radiotherapy: A theoretical investigation
Q91861014	Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs
Q35208332	Enhanced regulatory sequence prediction using gapped k-mer features
Q33604697	Enhancement of transport selectivity through nano-channels by non-specific competition
Q113309507	Enhancer Responses to Similarly Distributed Antagonistic Gradients in Development
Q33284529	Enhancer responses to similarly distributed antagonistic gradients in development
Q113309286	Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers
Q34611078	Enhancing human spermine synthase activity by engineered mutations
Q113308556	Enhancing long-term forecasting: Learning from COVID-19 models
Q113309199	Enhancing oscillations in intracranial electrophysiological recordings with data-driven spatial filters
Q89717575	Enhancing reproducibility of gene expression analysis with known protein functional relationships: The concept of well-associated protein
Q34426359	Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks
Q35914516	Ensemble Tractography
Q91806050	Ensemble modeling of auditory streaming reveals potential sources of bistability across the perceptual hierarchy
Q34192824	Ensemble models of neutrophil trafficking in severe sepsis
Q92072526	Ensemble of decision tree reveals potential miRNA-disease associations
Q34058079	Ensemble-based computational approach discriminates functional activity of p53 cancer and rescue mutants
Q36060332	Ensembler: Enabling High-Throughput Molecular Simulations at the Superfamily Scale
Q35361826	Ensembles of spiking neurons with noise support optimal probabilistic inference in a dynamically changing environment
Q34302123	Entrainment of the mammalian cell cycle by the circadian clock: modeling two coupled cellular rhythms
Q24817209	Entropic stabilization of proteins and its proteomic consequences
Q113309674	Entropic stabilization of proteins and its proteomic consequences
Q34205855	Entropic tension in crowded membranes
Q29248852	Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin
Q33325881	Entropy measures quantify global splicing disorders in cancer
Q28538235	Enumeration of smallest intervention strategies in genome-scale metabolic networks
Q112690018	Envelope reconstruction of speech and music highlights stronger tracking of speech at low frequencies
Q21558515	Environmental and state-level regulatory factors affect the incidence of autism and intellectual disability
Q27323373	Environmental influence on the evolution of morphological complexity in machines
Q28543209	Environmental statistics and optimal regulation
Q21563487	Environments that induce synthetic microbial ecosystems
Q60907118	Enzymatic and non-enzymatic pathways of kynurenines' dimerization: the molecular factors for oxidative stress development
Q28551936	Enzyme Sequestration as a Tuning Point in Controlling Response Dynamics of Signalling Networks
Q28476437	Enzyme kinetics of the mitochondrial deoxyribonucleoside salvage pathway are not sufficient to support rapid mtDNA replication
Q33302671	Enzyme localization can drastically affect signal amplification in signal transduction pathways
Q113309455	Enzyme localization can drastically affect signal amplification in signal transduction pathways
Q54978867	Enzyme sequestration by the substrate: An analysis in the deterministic and stochastic domains.
Q99613404	Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data
Q35881965	Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set.
Q113265277	Epidemic management and control through risk-dependent individual contact interventions
Q92240467	Epidemic prevalence information on social networks can mediate emergent collective outcomes in voluntary vaccine schemes
Q21145301	Epidemic spread on weighted networks
Q34549436	Epidemic spreading model to characterize misfolded proteins propagation in aging and associated neurodegenerative disorders
Q113308820	Epidemiological and ecological consequences of virus manipulation of host and vector in plant virus transmission
Q30402629	Epidemiological and economic impact of pandemic influenza in Chicago: Priorities for vaccine interventions
Q96164946	Epidemiological consequences of enduring strain-specific immunity requiring repeated episodes of infection
Q33714036	Epidemiological modeling of Trypanosoma cruzi: Low stercorarian transmission and failure of host adaptive immunity explain the frequency of mixed infections in humans
Q30656548	Epidemiologically optimal static networks from temporal network data
Q113308664	Epigenetic cell memory: The gene’s inner chromatin modification circuit
Q113309194	Epigenetic instability may alter cell state transitions and anticancer drug resistance
Q35224744	Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming genes
Q51556720	Epigenetic regulation of cell fate reprogramming in aging and disease: A predictive computational model.
Q90970568	Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise
Q35113485	Epigenetics decouples mutational from environmental robustness. Did it also facilitate multicellularity?
Q96693381	Epigenome-based splicing prediction using a recurrent neural network
Q113309148	Episome partitioning and symmetric cell divisions: Quantifying the role of random events in the persistence of HPV infections
Q33904013	Epistasis in a model of molecular signal transduction
Q38692827	Epistasis in genomic and survival data of cancer patients.
Q98576605	Epithelial organ shape is generated by patterned actomyosin contractility and maintained by the extracellular matrix
Q61811297	Epithelial stratification shapes infection dynamics
Q27331858	Epitope flexibility and dynamic footprint revealed by molecular dynamics of a pMHC-TCR complex
Q112574051	Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies
Q28480864	Equation-free analysis of two-component system signalling model reveals the emergence of co-existing phenotypes in the absence of multistationarity
Q30873646	Eradication of chronic myeloid leukemia stem cells: a novel mathematical model predicts no therapeutic benefit of adding G-CSF to imatinib
Q113309262	Ergodicity-breaking reveals time optimal decision making in humans
Q35914569	Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories
Q33813503	Erratic flu vaccination emerges from short-sighted behavior in contact networks
Q33385151	Erratum.
Q61811298	Erratum: Notice of Republication: Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects
Q64062629	Erratum: Notice of Republication: Ten simple rules for organizing a webinar series
Q92515711	Erratum: Notification of Republication: Modeling individual time courses of thrombopoiesis during multi-cyclic chemotherapy
Q36349637	Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal
Q36137299	Error Correction and the Structure of Inter-Trial Fluctuations in a Redundant Movement Task
Q36194956	Error-Robust Modes of the Retinal Population Code.
Q113308466	Error-based or target-based? A unified framework for learning in recurrent spiking networks
Q30990372	Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
Q27323050	Escherichia coli peptidoglycan structure and mechanics as predicted by atomic-scale simulations
Q35172833	Essential plasticity and redundancy of metabolism unveiled by synthetic lethality analysis
Q34005271	Essential requirements for robust signaling in Hfq dependent small RNA networks
Q27317368	Established Microbial Colonies Can Survive Type VI Secretion Assault
Q35806265	Establishing a Statistical Link between Network Oscillations and Neural Synchrony
Q64963371	Establishing a computational biology flipped classroom.
Q33474761	Establishing a successful bioinformatics core facility team
Q35377120	Establishing and managing a global student network
Q34236607	Establishment and validation of computational model for MT1-MMP dependent ECM degradation and intervention strategies
Q92124177	Establishment of computational biology in Greece and Cyprus: Past, present, and future
Q38499545	Estimated comparative integration hotspots identify different behaviors of retroviral gene transfer vectors
Q113309364	Estimates of the basic reproduction number for rubella using seroprevalence data and indicator-based approaches
Q36134501	Estimating Copy Number and Allelic Variation at the Immunoglobulin Heavy Chain Locus Using Short Reads
Q33239376	Estimating Costs and Benefits of CTL Escape Mutations in SIV/HIV Infection
Q113309648	Estimating Costs and Benefits of CTL Escape Mutations in SIV/HIV Infection
Q28544753	Estimating HIV-1 fitness characteristics from cross-sectional genotype data
Q39768269	Estimating Time of Infection Using Prior Serological and Individual Information Can Greatly Improve Incidence Estimation of Human and Wildlife Infections
Q95284852	Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation
Q21145377	Estimating cell depth from somatic mutations
Q113308991	Estimating ectopic beat probability with simplified statistical models that account for experimental uncertainty
Q100523111	Estimating effective population size changes from preferentially sampled genetic sequences
Q90356266	Estimating epidemiological parameters from experiments in vector access to host plants, the method of matching gradients
Q113308695	Estimating genetic variance contributed by a quantitative trait locus: A random model approach
Q110770984	Estimating incidence of infection from diverse data sources: Zika virus in Puerto Rico, 2016
Q104514859	Estimating individuals' genetic and non-genetic effects underlying infectious disease transmission from temporal epidemic data
Q90413997	Estimating influenza incidence using search query deceptiveness and generalized ridge regression
Q93073937	Estimating information in time-varying signals
Q27320586	Estimating location without external cues
Q35439820	Estimating relative changes of metabolic fluxes
Q112712756	Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT
Q41702243	Estimating short-term synaptic plasticity from pre- and postsynaptic spiking.
Q35560859	Estimating the In Vivo Killing Efficacy of Cytotoxic T Lymphocytes across Different Peptide-MHC Complex Densities
Q36275248	Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control
Q112556413	Estimating the conditional probability of developing human papilloma virus related oropharyngeal cancer by combining machine learning and inverse Bayesian modelling
Q33504533	Estimating the continuous-time dynamics of energy and fat metabolism in mice
Q113309384	Estimating the dimensionality of the manifold underlying multi-electrode neural recordings
Q34288751	Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase.
Q113308752	Estimating the glutamate transporter surface density in distinct sub-cellular compartments of mouse hippocampal astrocytes
Q27329500	Estimating the hidden burden of bovine tuberculosis in Great Britain
Q30860281	Estimating the location and spatial extent of a covert anthrax release
Q64123086	Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
Q45984923	Estimating the probabilities of rare arrhythmic events in multiscale computational models of cardiac cells and tissue.
Q31151010	Estimating the probability of polyreactive antibodies 4E10 and 2F5 disabling a gp41 trimer after T cell-HIV adhesion
Q31036456	Estimating the relevance of world disturbances to explain savings, interference and long-term motor adaptation effects
Q21563494	Estimating the stochastic bifurcation structure of cellular networks
Q33545224	Estimating the stoichiometry of HIV neutralization
Q112557917	Estimating the time-varying reproduction number of COVID-19 with a state-space method
Q41926717	Estimating time of HIV-1 infection from next-generation sequence diversity
Q35959303	Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome
Q96963993	Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices
Q90186522	Estimation of neural network model parameters from local field potentials (LFPs)
Q97553586	Estimation of neuron parameters from imperfect observations
Q33813491	Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays
Q113309054	Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits
Q91959174	Estimation of temporal covariances in pathogen dynamics using Bayesian multivariate autoregressive models
Q33422944	Estimation of thalamocortical and intracortical network models from joint thalamic single-electrode and cortical laminar-electrode recordings in the rat barrel system
Q64060968	Estimation of the breadth of CD4bs targeting HIV antibodies by molecular modeling and machine learning
Q54946568	Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape.
Q100446247	Estimation of the force of infection and infectious period of skin sores in remote Australian communities using interval-censored data
Q34711768	Estimation of vaccine efficacy and critical vaccination coverage in partially observed outbreaks
Q93075664	EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame
Q27826376	Ethical Challenges of Big Data in Public Health
Q33954321	Eurekometrics: analyzing the nature of discovery
Q28647282	Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa
Q33747482	Evaluating gene expression dynamics using pairwise RNA FISH data
Q62659867	Evaluating reproducibility of AI algorithms in digital pathology with DAPPER
Q113308756	Evaluating spatially adaptive guidelines for the treatment of gonorrhea to reduce the incidence of gonococcal infection and increase the effective lifespan of antibiotics
Q112639931	Evaluating supervised and unsupervised background noise correction in human gut microbiome data
Q34456025	Evaluating the adequacy of gravity models as a description of human mobility for epidemic modelling.
Q113309150	Evaluating the effectiveness of ensemble voting in improving the accuracy of consensus signals produced by various DTWA algorithms from step-current signals generated during nanopore sequencing
Q113309259	Evaluation and comparison of multi-omics data integration methods for cancer subtyping
Q104607082	Evaluation of CD8 T cell killing models with computer simulations of 2-photon imaging experiments
Q90694296	Evaluation of linear and non-linear activation dynamics models for insect muscle
Q30489701	Evaluation of objective uncertainty in the visual system
Q21145383	Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer
Q93074256	Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data
Q36024108	Evaluation of the Phase-Dependent Rhythm Control of Human Walking Using Phase Response Curves
Q27335138	Evaluation of the oscillatory interference model of grid cell firing through analysis and measured period variance of some biological oscillators
Q64240761	Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited
Q102215373	EventEpi-A natural language processing framework for event-based surveillance
Q92367961	Every which way? On predicting tumor evolution using cancer progression models
Q93075135	Evidence accumulation is biased by motivation: A computational account
Q35888748	Evidence for Functional Groupings of Vibrissae across the Rodent Mystacial Pad.
Q92123538	Evidence for a multi-level trophic organization of the human gut microbiome
Q34055201	Evidence for composite cost functions in arm movement planning: an inverse optimal control approach
Q35045376	Evidence for finely-regulated asynchronous growth of Toxoplasma gondii cysts based on data-driven model selection
Q33406222	Evidence for gene-specific rather than transcription rate-dependent histone H3 exchange in yeast coding regions
Q113308451	Evidence for influenza and RSV interaction from 10 years of enhanced surveillance in Nha Trang, Vietnam, a modelling study
Q31111573	Evidence for model-based computations in the human amygdala during Pavlovian conditioning.
Q34119004	Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome
Q113308762	Evidence for the emergence of β-trefoils by ‘Peptide Budding’ from an IgG-like β-sandwich
Q113308994	Evidence from simulation studies for selective constraints on the codon usage of the Angiosperm psbA gene
Q57063904	Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation
Q24813527	Evidence of a double-lid movement in Pseudomonas aeruginosa lipase: insights from molecular dynamics simulations
Q28543479	Evidence of conformational selection driving the formation of ligand binding sites in protein-protein interfaces
Q33701761	Evidence of functional protein dynamics from X-ray crystallographic ensembles
Q33256101	Evidence of influence of genomic DNA sequence on human X chromosome inactivation
Q104069238	Evolution along the parasitism-mutualism continuum determines the genetic repertoire of prophages
Q27334490	Evolution and optimality of similar neural mechanisms for perception and action during search
Q35572299	Evolution and phenotypic selection of cancer stem cells
Q33314598	Evolution and selection in yeast promoters: analyzing the combined effect of diverse transcription factor binding sites
Q36223840	Evolution at 'Sutures' and 'Centers': Recombination Can Aid Adaptation of Spatially Structured Populations on Rugged Fitness Landscapes
Q113308798	Evolution enhances mutational robustness and suppresses the emergence of a new phenotype: A new computational approach for studying evolution
Q35940240	Evolution of Cooperation in Social Dilemmas on Complex Networks
Q35764790	Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome
Q27318981	Evolution of Self-Organized Task Specialization in Robot Swarms
Q34198399	Evolution of a signaling nexus constrained by protein interfaces and conformational States
Q35418380	Evolution of all-or-none strategies in repeated public goods dilemmas
Q28484785	Evolution of associative learning in chemical networks
Q35583653	Evolution of bow-tie architectures in biology
Q89137102	Evolution of chemokine receptors is driven by mutations in the sodium binding site
Q33319273	Evolution of complex modular biological networks
Q113309407	Evolution of complex modular biological networks
Q28757885	Evolution of evolvability in gene regulatory networks
Q28469259	Evolution of function in the "two dinucleotide binding domains" flavoproteins
Q28749934	Evolution of gene regulatory networks by fluctuating selection and intrinsic constraints
Q24816827	Evolution of genetic potential
Q113308686	Evolution of innate behavioral strategies through competitive population dynamics
Q35529414	Evolution of integrated causal structures in animats exposed to environments of increasing complexity
Q64934382	Evolution of interface binding strengths in simplified model of protein quaternary structure.
Q64941386	Evolution of major histocompatibility complex gene copy number.
Q102205284	Evolution of multicellular life cycles under costly fragmentation
Q27332327	Evolution of networks for body plan patterning; interplay of modularity, robustness and evolvability
Q35172752	Evolution of pathogen specialisation in a host metapopulation: joint effects of host and pathogen dispersal
Q113309379	Evolution of phenotypic fluctuation under host-parasite interactions
Q28471733	Evolution of resistance to targeted anti-cancer therapies during continuous and pulsed administration strategies
Q34390455	Evolution of stress response in the face of unreliable environmental signals
Q28472792	Evolution of taxis responses in virtual bacteria: non-adaptive dynamics
Q35238226	Evolution of the F0F1 ATP synthase complex in light of the patchy distribution of different bioenergetic pathways across prokaryotes
Q35489596	Evolution of the division of labor between genes and enzymes in the RNA world
Q34236544	Evolution of the multi-domain structures of virulence genes in the human malaria parasite, Plasmodium falciparum
Q90970740	Evolution of the nonsense-mediated decay pathway is associated with decreased cytolytic immune infiltration
Q112563618	Evolution of tunnels in α/β-hydrolase fold proteins-What can we learn from studying epoxide hydrolases?
Q112431432	Evolution to alternative levels of stable diversity leaves areas of niche space unexplored
Q28475317	Evolution under fluctuating environments explains observed robustness in metabolic networks
Q28552621	Evolution-Based Functional Decomposition of Proteins
Q28473170	Evolutionarily conserved substrate substructures for automated annotation of enzyme superfamilies
Q35967858	Evolutionary Conserved Positions Define Protein Conformational Diversity
Q36101544	Evolutionary Games of Multiplayer Cooperation on Graphs
Q36546952	Evolutionary Genomics Suggests That CheV Is an Additional Adaptor for Accommodating Specific Chemoreceptors within the Chemotaxis Signaling Complex
Q113309486	Evolutionary History of Mammalian Transposons Determined by Genome-wide Defragmentation
Q113309630	Evolutionary Potential of a Duplicated Repressor-Operator Pair: Simulating Pathways using Mutation Data
Q34005257	Evolutionary accessibility of mutational pathways
Q28484825	Evolutionary analysis of human immunodeficiency virus type 1 therapies based on conditionally replicating vectors
Q48123961	Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation
Q28552700	Evolutionary and Functional Relationships in the Truncated Hemoglobin Family
Q36064678	Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks
Q33250079	Evolutionary and physiological importance of hub proteins
Q113309610	Evolutionary and physiological importance of hub proteins
Q34671764	Evolutionary capacitance and control of protein stability in protein-protein interaction networks
Q55442997	Evolutionary dynamics of paroxysmal nocturnal hemoglobinuria.
Q30559607	Evolutionary dynamics of strategic behavior in a collective-risk dilemma
Q30421817	Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts
Q28475118	Evolutionary epidemiology of drug-resistance in space
Q27334962	Evolutionary establishment of moral and double moral standards through spatial interactions
Q28534841	Evolutionary evidence for alternative structure in RNA sequence co-variation
Q58728935	Evolutionary footprint of epistasis
Q35156715	Evolutionary game dynamics in populations with heterogenous structures
Q34229549	Evolutionary game theory and social learning can determine how vaccine scares unfold
Q28757412	Evolutionary history of mammalian transposons determined by genome-wide defragmentation
Q113308837	Evolutionary information helps understand distinctive features of the angiotensin II receptors AT1 and AT2 in amniota
Q33269794	Evolutionary interactions between N-linked glycosylation sites in the HIV-1 envelope
Q113309547	Evolutionary interactions between N-linked glycosylation sites in the HIV-1 envelope
Q64064700	Evolutionary model for the unequal segregation of high copy plasmids
Q28473878	Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes
Q33304212	Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network
Q113309453	Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network
Q64096890	Evolutionary multiplayer games on graphs with edge diversity
Q30426209	Evolutionary optimization of protein folding
Q33325883	Evolutionary patterns in the sequence and structure of transfer RNA: early origins of archaea and viruses
Q28472194	Evolutionary plasticity and innovations in complex metabolic reaction networks
Q31042645	Evolutionary potential of a duplicated repressor-operator pair: simulating pathways using mutation data
Q28474378	Evolutionary sequence modeling for discovery of peptide hormones
Q28535196	Evolutionary tradeoffs between economy and effectiveness in biological homeostasis systems
Q33497902	Evolutionary triplet models of structured RNA
Q21045429	Evolving digital ecological networks
Q90414037	Evolving generalists in switching rugged landscapes
Q35224254	Evolving nutritional strategies in the presence of competition: a geometric agent-based model
Q28541849	Exact hybrid particle/population simulation of rule-based models of biochemical systems
Q104475241	Exact neural mass model for synaptic-based working memory
Q27318187	Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes
Q49980823	Examining the controllability of sepsis using genetic algorithms on an agent-based model of systemic inflammation.
Q35262045	Examining variable domain orientations in antigen receptors gives insight into TCR-like antibody design
Q33300128	Excitability constraints on voltage-gated sodium channels
Q61919264	Excitable neuronal assemblies with adaptation as a building block of brain circuits for velocity-controlled signal propagation
Q34341309	Excitatory local interneurons enhance tuning of sensory information
Q93073933	Executable pathway analysis using ensemble discrete-state modeling for large-scale data
Q35740048	Exhaustive Analysis of a Genotype Space Comprising 10(15 )Central Carbon Metabolisms Reveals an Organization Conducive to Metabolic Innovation.
Q31011332	Exhaustive sampling of docking poses reveals binding hypotheses for propafenone type inhibitors of P-glycoprotein
Q30008743	Exhaustive search of linear information encoding protein-peptide recognition
Q35614047	Existence and control of Go/No-Go decision transition threshold in the striatum
Q37297025	Exome Sequencing and Prediction of Long-Term Kidney Allograft Function.
Q30912245	Exon array analysis of head and neck cancers identifies a hypoxia related splice variant of LAMA3 associated with a poor prognosis
Q64056712	Exon level machine learning analyses elucidate novel candidate miRNA targets in an avian model of fetal alcohol spectrum disorder
Q41048223	Expanding signaling-molecule wavefront model of cell polarization in the Drosophila wing primordium
Q28534702	Expanding the druggable space of the LSD1/CoREST epigenetic target: new potential binding regions for drug-like molecules, peptides, protein partners, and chromatin
Q30356461	Expansion of protein domain repeats
Q57209069	Expansion of protein domain repeats
Q33598545	Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families
Q109040146	Expectancy-based rhythmic entrainment as continuous Bayesian inference
Q112690724	Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops
Q112287605	Experiment level curation of transcriptional regulatory interactions in neurodevelopment
Q29394636	Experimental and Computational Analysis of a Large Protein Network That Controls Fat Storage Reveals the Design Principles of a Signaling Network
Q27334442	Experimental and computational analysis of polyglutamine-mediated cytotoxicity
Q111150157	Experimental and computational investigation of enzyme functional annotations uncovers misannotation in the EC 1.1.3.15 enzyme class
Q115020717	Experimental guidance for discovering genetic networks through hypothesis reduction on time series
Q27329021	Experimental studies and dynamics modeling analysis of the swimming and diving of whirligig beetles (Coleoptera: Gyrinidae)
Q35751102	Experimentally Verified Parameter Sets for Modelling Heterogeneous Neocortical Pyramidal-Cell Populations
Q91668311	Experimentally guided computational antibody affinity maturation with de novo docking, modelling and rational design
Q64882595	Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons.
Q35034141	Explain bioinformatics to your grandmother!
Q113308398	Explainable deep transfer learning model for disease risk prediction using high-dimensional genomic data
Q113308525	Explainable detection of adverse drug reaction with imbalanced data distribution
Q113309277	Explaining distortions in metacognition with an attractor network model of decision uncertainty
Q35224664	Explaining diversity in metagenomic datasets by phylogenetic-based feature weighting
Q34058073	Explaining observed infection and antibody age-profiles in populations with urogenital schistosomiasis.
Q35763555	Explaining the Timing of Natural Scene Understanding with a Computational Model of Perceptual Categorization
Q28489076	Explaining the determinants of first phase HIV decay dynamics through the effects of stage-dependent drug action
Q33530083	Explicit kinetic heterogeneity: mathematical models for interpretation of deuterium labeling of heterogeneous cell populations
Q35976455	Exploiting Gene-Expression Deconvolution to Probe the Genetics of the Immune System
Q42695844	Exploiting ecology in drug pulse sequences in favour of population reduction
Q52314288	Exploiting glycan topography for computational design of Env glycoprotein antigenicity.
Q52692704	Exploiting the geometry of the solution space to reduce sensitivity to neuromotor noise.
Q90364718	Exploration and stabilization of Ras1 mating zone: A mechanism with positive and negative feedbacks
Q34244861	Exploration of multi-state conformational dynamics and underlying global functional landscape of maltose binding protein
Q28539157	Exploration of the dynamic properties of protein complexes predicted from spatially constrained protein-protein interaction networks
Q92488134	Exploring E-cadherin-peptidomimetics interaction using NMR and computational studies
Q28542472	Exploring O2 diffusion in A-type cytochrome c oxidases: molecular dynamics simulations uncover two alternative channels towards the binuclear site
Q35034112	Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening
Q116595311	Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins
Q30153236	Exploring bacterial organelle interactomes: a model of the protein-protein interaction network in the Pdu microcompartment
Q61811243	Exploring chromatin hierarchical organization via Markov State Modelling
Q28536903	Exploring early stages of the chemical unfolding of proteins at the proteome scale
Q34038948	Exploring fold space preferences of new-born and ancient protein superfamilies
Q34302131	Exploring massive, genome scale datasets with the GenometriCorr package
Q58768407	Exploring of the feature space of de novo developed post-transcriptional riboregulators
Q28477582	Exploring off-targets and off-systems for adverse drug reactions via chemical-protein interactome--clozapine-induced agranulocytosis as a case study
Q28535327	Exploring the composition of protein-ligand binding sites on a large scale
Q27322857	Exploring the conformational transitions of biomolecular systems using a simple two-state anisotropic network model
Q28483276	Exploring the contextual sensitivity of factors that determine cell-to-cell variability in receptor-mediated apoptosis
Q34186907	Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies
Q28475617	Exploring the free energy landscape: from dynamics to networks and back
Q57061670	Exploring the impact of inoculum dose on host immunity and morbidity to inform model-based vaccine design
Q42362175	Exploring the inhibition mechanism of adenylyl cyclase type 5 by n-terminal myristoylated Gαi1
Q36263790	Exploring the inhibitory effect of membrane tension on cell polarization.
Q34314844	Exploring the miRNA regulatory network using evolutionary correlations.
Q100529647	Exploring the sequence fitness landscape of a bridge between protein folds
Q56394930	Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
Q27334418	Exploring the universe of protein structures beyond the Protein Data Bank
Q27324485	Exploring volatile general anesthetic binding to a closed membrane-bound bacterial voltage-gated sodium channel via computation
Q28269138	Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit
Q92078186	Expression of quasi-equivalence and capsid dimorphism in the Hepadnaviridae
Q34281731	Expression profile of the Schistosoma japonicum degradome reveals differential protease expression patterns and potential anti-schistosomal intervention targets
Q28469232	Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells
Q112572428	Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex
Q113309374	Extended graphical lasso for multiple interaction networks for high dimensional omics data
Q36205547	Extending Integrate-and-Fire Model Neurons to Account for the Effects of Weak Electric Fields and Input Filtering Mediated by the Dendrite.
Q35593094	Extensive decoupling of metabolic genes in cancer
Q35488229	Extensive error in the number of genes inferred from draft genome assemblies
Q34407759	External drive to inhibitory cells induces alternating episodes of high- and low-amplitude oscillations.
Q96836398	Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli
Q112614326	Extracellular matrix density regulates the formation of tumour spheroids through cell migration
Q28550516	Extracting Behaviorally Relevant Traits from Natural Stimuli: Benefits of Combinatorial Representations at the Accessory Olfactory Bulb
Q28550544	Extracting Diffusive States of Rho GTPase in Live Cells: Towards In Vivo Biochemistry
Q33251020	Extracting gene networks for low-dose radiation using graph theoretical algorithms
Q114054803	Extracting individual characteristics from population data reveals a negative social effect during honeybee defence
Q33932796	Extracting message inter-departure time distributions from the human electroencephalogram
Q113308881	Extracting multi-way chromatin contacts from Hi-C data
Q41561831	Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate.
Q113309349	Extracting temporal relationships between weakly coupled peptidergic and motoneuronal signaling: Application to Drosophila ecdysis behavior
Q34611091	Extraction of sub-microscopic Ca fluxes from blurred and noisy fluorescent indicator images with a detailed model fitting approach
Q24811505	Extraction of transcript diversity from scientific literature
Q35067186	Extrapolating weak selection in evolutionary games.
Q92660574	FAMoS: A Flexible and dynamic Algorithm for Model Selection to analyse complex systems dynamics
Q36240275	FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms
Q36368872	FIMTrack: An open source tracking and locomotion analysis software for small animals
Q28475563	FINDSITE: a threading-based approach to ligand homology modeling
Q28475932	FLORA: a novel method to predict protein function from structure in diverse superfamilies
Q104129885	FOCAL3D: A 3-dimensional clustering package for single-molecule localization microscopy
Q21145369	Facilitated variation: how evolution learns from past environments to generalize to new environments
Q98296680	Facilitating the propagation of spiking activity in feedforward networks by including feedback
Q113309070	Factors affecting aerosol SARS-CoV-2 transmission via HVAC systems; a modeling study
Q52673971	Factors affecting basket catheter detection of real and phantom rotors in the atria: A computational study.
Q112298645	Factors influencing estimates of HIV-1 infection timing using BEAST
Q34126217	Failure of adaptive self-organized criticality during epileptic seizure attacks
Q33363108	Falling towards forgetfulness: synaptic decay prevents spontaneous recovery of memory
Q36043750	FamPipe: An Automatic Analysis Pipeline for Analyzing Sequencing Data in Families for Disease Studies
Q30865646	FamSeq: a variant calling program for family-based sequencing data using graphics processing units
Q28602790	Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression
Q113309457	Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix
Q35708479	Fast Simulation of Mechanical Heterogeneity in the Electrically Asynchronous Heart Using the MultiPatch Module.
Q35986997	Fast and Accurate Learning When Making Discrete Numerical Estimates
Q35903613	Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics
Q113309382	Fast and accurate influenza forecasting in the United States with Inferno
Q30370545	Fast and accurate resonance assignment of small-to-large proteins by combining automated and manual approaches.
Q113309244	Fast and flexible processing of large FRET image stacks using the FRET-IBRA toolkit
Q33817469	Fast and general tests of genetic interaction for genome-wide association studies
Q90123443	Fast and near-optimal monitoring for healthcare acquired infection outbreaks
Q91790378	Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares
Q27330513	Fast coding of orientation in primary visual cortex
Q99589358	Fast estimation of time-varying infectious disease transmission rates
Q21563491	Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Q30843179	Fast online deconvolution of calcium imaging data
Q33302670	Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
Q35156988	Fast protein loop sampling and structure prediction using distance-guided sequential chain-growth Monte Carlo method
Q113308647	Fast protein structure comparison through effective representation learning with contrastive graph neural networks
Q28538763	Fast reconstruction of compact context-specific metabolic network models
Q34334076	Fast spatiotemporal smoothing of calcium measurements in dendritic trees
Q21145358	Fast statistical alignment
Q27321015	Fast synchronization of ultradian oscillators controlled by delta-notch signaling with cis-inhibition
Q93011816	Fast uncertainty quantification for dynamic flux balance analysis using non-smooth polynomial chaos expansions
Q28474487	Fast- or slow-inactivated state preference of Na+ channel inhibitors: a simulation and experimental study
Q35922389	FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks
Q114967144	FastTrack: An open-source software for tracking varying numbers of deformable objects
Q35887959	Faster Adaptation in Smaller Populations: Counterintuitive Evolution of HIV during Childhood Infection
Q91089218	Feasibility of functional magnetic resonance imaging of ocular dominance and orientation preference in primary visual cortex
Q112680546	Feature blindness: A challenge for understanding and modelling visual object recognition
Q47916045	Feature reliability determines specificity and transfer of perceptual learning in orientation search.
Q35018014	Feature selection methods for identifying genetic determinants of host species in RNA viruses.
Q42685092	Features of spatial and functional segregation and integration of the primate connectome revealed by trade-off between wiring cost and efficiency
Q35803484	Feed-Forward versus Feedback Inhibition in a Basic Olfactory Circuit
Q36220165	Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator.
Q36298380	Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation
Q31010067	Feedback control architecture and the bacterial chemotaxis network
Q35156907	Feedback signals in myelodysplastic syndromes: increased self-renewal of the malignant clone suppresses normal hematopoiesis
Q35962143	Feedback, Lineages and Self-Organizing Morphogenesis
Q36233844	Feedback, Mass Conservation and Reaction Kinetics Impact the Robustness of Cellular Oscillations
Q35940296	Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System
Q34211439	Feedforward inhibition and synaptic scaling--two sides of the same coin?
Q101568591	Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms
Q111320562	FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks
Q100732719	Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin
Q34778454	Fibrin networks regulate protein transport during thrombus development
Q36293801	Fidelity of the representation of value in decision-making
Q113308403	Fides: Reliable trust-region optimization for parameter estimation of ordinary differential equation models
Q108127190	Fifteen quick tips for success with HPC, i.e., responsibly BASHing that Linux cluster
Q28483633	Filament compliance influences cooperative activation of thin filaments and the dynamics of force production in skeletal muscle
Q27333154	Filament depolymerization can explain chromosome pulling during bacterial mitosis
Q47238551	Filament turnover tunes both force generation and dissipation to control long-range flows in a model actomyosin cortex
Q33320173	Filling-in and suppression of visual perception from context: a Bayesian account of perceptual biases by contextual influences
Q27316224	Filopodial-Tension Model of Convergent-Extension of Tissues
Q100508785	FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution
Q35847146	Finding New Order in Biological Functions from the Network Structure of Gene Annotations
Q42251410	Finding a needle in a haystack: the role of electrostatics in target lipid recognition by PH domains.
Q34987944	Finding associations among histone modifications using sparse partial correlation networks
Q64082404	Finding driver mutations in cancer: Elucidating the role of background mutational processes
Q113309052	Finding landmarks - An investigation of viewing behavior during spatial navigation in VR using a graph-theoretical analysis approach
Q33685461	Finding novel molecular connections between developmental processes and disease.
Q33707405	Finding the "dark matter" in human and yeast protein network prediction and modelling
Q64099407	Finding the balance between model complexity and performance: Using ventral striatal oscillations to classify feeding behavior in rats
Q33750214	Finding the way with a noisy brain
Q100560914	Finding, visualizing, and quantifying latent structure across diverse animal vocal repertoires
Q113309352	Fine scale prediction of ecological community composition using a two-step sequential Machine Learning ensemble
Q120684760	Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments
Q113308802	Fine-scale estimation of effective reproduction numbers for dengue surveillance
Q92251770	Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15
Q34299332	Fine-tuning tomato agronomic properties by computational genome redesign
Q35830781	FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants
Q47570439	Firing rate equations require a spike synchrony mechanism to correctly describe fast oscillations in inhibitory networks
Q98719708	Firing rate homeostasis counteracts changes in stability of recurrent neural networks caused by synapse loss in Alzheimer's disease
Q55116398	Firing-rate based network modeling of the dLGN circuit: Effects of cortical feedback on spatiotemporal response properties of relay cells.
Q33838205	First principles modeling of nonlinear incidence rates in seasonal epidemics
Q89935797	Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein
Q42706624	Flexibility to contingency changes distinguishes habitual and goal-directed strategies in humans
Q35758977	Flexible Modeling of Epidemics with an Empirical Bayes Framework
Q113309489	Flexible and accurate detection of genomic copy-number changes from aCGH
Q30479616	Flexible and accurate detection of genomic copy-number changes from aCGH.
Q33842127	Flexible cognitive strategies during motor learning
Q98193563	Flexible neural connectivity under constraints on total connection strength
Q58792947	Flexible resonance in prefrontal networks with strong feedback inhibition
Q91596187	Flocking in complex environments-Attention trade-offs in collective information processing
Q21045422	Flow cytometry bioinformatics
Q36095826	Flow-Based Network Analysis of the Caenorhabditis elegans Connectome.
Q27334983	Flow-based cytometric analysis of cell cycle via simulated cell populations
Q30227314	FluTE, a publicly available stochastic influenza epidemic simulation model
Q52640460	Fluctuating Finite Element Analysis (FFEA): A continuum mechanics software tool for mesoscale simulation of biomolecules.
Q27316776	Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles
Q64101025	Fluctuating environments select for short-term phenotypic variation leading to long-term exploration
Q27317256	Fluctuation-Driven Neural Dynamics Reproduce Drosophila Locomotor Patterns
Q113308527	Fluid mechanics of the zebrafish embryonic heart trabeculation
Q113309675	Flux Balance Analysis of Mycolic Acid Pathway: Targets for Anti-tubercular Drugs
Q34811786	Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803.
Q21145695	Flux balance analysis of mycolic acid pathway: targets for anti-tubercular drugs
Q113308768	Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds
Q38689360	Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a.
Q28536139	Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools
Q92078264	Flux-based hierarchical organization of Escherichia coli's metabolic network
Q27336302	Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development
Q89997648	Fly-QMA: Automated analysis of mosaic imaginal discs in Drosophila
Q113309638	Fold Designability, Distribution and Disease
Q33242614	Fold designability, distribution, and disease
Q24815888	Folding free energies of 5'-UTRs impact post-transcriptional regulation on a genomic scale in yeast
Q113309662	Folding free energies of 5'-UTRs impact post-transcriptional regulation on a genomic scale in yeast
Q34649543	Folding pathways of a knotted protein with a realistic atomistic force field
Q21145688	Folding very short peptides using molecular dynamics
Q35909341	Food Web Assembly Rules for Generalized Lotka-Volterra Equations
Q92146686	Foraging as an evidence accumulation process
Q113308783	Foraging as sampling without replacement: A Bayesian statistical model for estimating biases in target selection
Q42706658	Force encoding in muscle spindles during stretch of passive muscle.
Q21145333	Forcing versus feedback: epidemic malaria and monsoon rains in northwest India
Q31132495	Forecasting Human African Trypanosomiasis Prevalences from Population Screening Data Using Continuous Time Models.
Q27318350	Forecasting Influenza Epidemics in Hong Kong
Q36194962	Forecasting Influenza Outbreaks in Boroughs and Neighborhoods of New York City
Q91373440	Forecasting dengue and influenza incidences using a sparse representation of Google trends, electronic health records, and time series data
Q100537455	Forecasting influenza in Europe using a metapopulation model incorporating cross-border commuting and air travel
Q64905826	Forecasting national and regional influenza-like illness for the USA.
Q28647468	Forecasting the 2013-2014 influenza season using Wikipedia
Q96770624	Forecasting unprecedented ecological fluctuations
Q92085639	ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest
Q36162490	Forgetting in Reinforcement Learning Links Sustained Dopamine Signals to Motivation.
Q36054262	Formal Models of the Network Co-occurrence Underlying Mental Operations
Q27318096	Formation and Dynamics of Waves in a Cortical Model of Cholinergic Modulation
Q28551982	Formation and Maintenance of Robust Long-Term Information Storage in the Presence of Synaptic Turnover
Q33389814	Formation and growth of oligomers: a Monte Carlo study of an amyloid tau fragment
Q90303761	Formation of phage lysis patterns and implications on co-propagation of phages and motile host bacteria
Q28486142	Formation of raft-like assemblies within clusters of influenza hemagglutinin observed by MD simulations
Q31036385	Formation of regulatory modules by local sequence duplication
Q113309305	Formation, collective motion, and merging of macroscopic bacterial aggregates
Q35069141	Forward and backward inference in spatial cognition
Q92718236	Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors
Q112617536	Four different mechanisms for switching cell polarity
Q33493397	Four distances between pairs of amino acids provide a precise description of their interaction
Q30843363	Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability.
Q47144940	Fragmentation modes and the evolution of life cycles.
Q113309073	Frank-Starling mechanism, fluid responsiveness, and length-dependent activation: Unravelling the multiscale behaviors with an in silico analysis
Q52367201	Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA.
Q34845200	Frequency dependence of signal power and spatial reach of the local field potential
Q35004436	Frequency response of a protein to local conformational perturbations
Q90123437	Frequency spectrum of chemical fluctuation: A probe of reaction mechanism and dynamics
Q28749554	Frequency-dependent selection predicts patterns of radiations and biodiversity
Q30476189	Frequency-invariant representation of interaural time differences in mammals
Q33285869	Frequent gain and loss of functional transcription factor binding sites
Q113309500	Frequent gain and loss of functional transcription factor binding sites
Q28647632	From "What Is?" to "What Isn't?" Computational Biology
Q30008906	From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors
Q57273785	From Endosymbiont to Host-Controlled Organelle: the Hijacking of Mitochondrial Protein Synthesis and Metabolism
Q90024068	From Escherichia coli mutant 13C labeling data to a core kinetic model: A kinetic model parameterization pipeline
Q113309449	From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses
Q35837049	From Sensory Signals to Modality-Independent Conceptual Representations: A Probabilistic Language of Thought Approach
Q113308508	From affinity selection to kinetic selection in Germinal Centre modelling
Q33261002	From bad to good: Fitness reversals and the ascent of deleterious mutations
Q30448962	From birdsong to human speech recognition: bayesian inference on a hierarchy of nonlinear dynamical systems
Q21145672	From bytes to bedside: data integration and computational biology for translational cancer research
Q89892622	From cells to tissue: How cell scale heterogeneity impacts glioblastoma growth and treatment response
Q34987982	From cellular characteristics to disease diagnosis: uncovering phenotypes with supercells
Q113308771	From complete cross-docking to partners identification and binding sites predictions
Q55401182	From correlation to causation: Estimating effective connectivity from zero-lag covariances of brain signals.
Q113308888	From decision to action: Detailed modelling of frog tadpoles reveals neuronal mechanisms of decision-making and reproduces unpredictable swimming movements in response to sensory signals
Q21090160	From dynamic expression patterns to boundary formation in the presomitic mesoderm
Q36345811	From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.
Q33305008	From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism
Q91878616	From energy to cellular forces in the Cellular Potts Model: An algorithmic approach
Q21145681	From functional genomics to functional immunomics: new challenges, old problems, big rewards
Q41635233	From homeostasis to behavior: Balanced activity in an exploration of embodied dynamic environmental-neural interaction
Q34597899	From hub proteins to hub modules: the relationship between essentiality and centrality in the yeast interactome at different scales of organization
Q30837875	From inverse problems in mathematical physiology to quantitative differential diagnoses
Q115187067	From kill the winner to eliminate the winner in open phage-bacteria systems
Q21090164	From morphology to neural information: the electric sense of the skate
Q33426383	From nonspecific DNA-protein encounter complexes to the prediction of DNA-protein interactions
Q33301001	From pathways databases to network models of switching behavior
Q31129038	From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction
Q113309316	From reaction kinetics to dementia: A simple dimer model of Alzheimer’s disease etiology
Q91989320	From skylight input to behavioural output: A computational model of the insect polarised light compass
Q90942808	From space to time: Spatial inhomogeneities lead to the emergence of spatiotemporal sequences in spiking neuronal networks
Q113308980	From spikes to intercellular waves: Tuning intercellular calcium signaling dynamics modulates organ size control
Q33809361	From spiking neuron models to linear-nonlinear models
Q27322361	From spontaneous motor activity to coordinated behaviour: a developmental model
Q33987387	From structure prediction to genomic screens for novel non-coding RNAs
Q21145297	From the phenomenology to the mechanisms of consciousness: Integrated Information Theory 3.0
Q93075085	From trainees to trainers to instructors: Sustainably building a national capacity in bioinformatics training
Q89717697	From whole-organ imaging to in-silico blood flow modeling: A new multi-scale network analysis for revisiting tissue functional anatomy
Q92251698	Frontal cortex tracks surprise separately for different sensory modalities but engages a common inhibitory control mechanism
Q34916607	Full design automation of multi-state RNA devices to program gene expression using energy-based optimization
Q113308805	Full scale structural, mechanical and dynamical properties of HIV-1 liposomes
Q60957354	Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons
Q112716032	FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution
Q60913126	Function and energy consumption constrain neuronal biophysics in a canonical computation: Coincidence detection
Q35759157	Functional Basis of Microorganism Classification
Q36162560	Functional Connectivity's Degenerate View of Brain Computation
Q113309680	Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets and Homology Models
Q24813528	Functional alignment of regulatory networks: a study of temperate phages
Q92205425	Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways
Q41333690	Functional analysis of metabolic channeling and regulation in lignin biosynthesis: a computational approach
Q33585377	Functional asymmetry and plasticity of electrical synapses interconnecting neurons through a 36-state model of gap junction channel gating
Q21092565	Functional brain networks develop from a "local to distributed" organization
Q33529031	Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances
Q21145680	Functional classification using phylogenomic inference
Q34481819	Functional connectivity and tuning curves in populations of simultaneously recorded neurons.
Q27325629	Functional connectivity in islets of Langerhans from mouse pancreas tissue slices
Q56985332	Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals
Q24814930	Functional coverage of the human genome by existing structures, structural genomics targets, and homology models
Q91279782	Functional diversity among sensory neurons from efficient coding principles
Q33750124	Functional genomics complements quantitative genetics in identifying disease-gene associations
Q28469139	Functional impact of missense variants in BRCA1 predicted by supervised learning
Q113309540	Functional impact of missense variants in BRCA1 predicted by supervised learning
Q34645271	Functional inference of complex anatomical tendinous networks at a macroscopic scale via sparse experimentation
Q47200755	Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting
Q34629093	Functional knowledge transfer for high-accuracy prediction of under-studied biological processes
Q31153034	Functional maps of protein complexes from quantitative genetic interaction data
Q59810712	Functional mechanisms underlie the emergence of a diverse range of plasticity phenomena
Q28484351	Functional modules, structural topology, and optimal activity in metabolic networks
Q33295216	Functional representation of enzymes by specific peptides
Q113309468	Functional representation of enzymes by specific peptides
Q34395199	Functional roles for synaptic-depression within a model of the fly antennal lobe
Q27334906	Functional rotation of the transporter AcrB: insights into drug extrusion from simulations
Q28475555	Functional states of the genome-scale Escherichia coli transcriptional regulatory system
Q55031377	Functional triplet motifs underlie accurate predictions of single-trial responses in populations of tuned and untuned V1 neurons.
Q28555219	Functionality and Robustness of Injured Connectomic Dynamics in C. elegans: Linking Behavioral Deficits to Neural Circuit Damage
Q36266315	Fundamental Activity Constraints Lead to Specific Interpretations of the Connectome
Q113309509	Fundamental Limits to Position Determination by Concentration Gradients
Q113265278	Fundamental limits on inferring epidemic resurgence in real time using effective reproduction numbers
Q28469194	Fundamental limits to position determination by concentration gradients
Q91034724	Fungal feature tracker (FFT): A tool for quantitatively characterizing the morphology and growth of filamentous fungi
Q113309577	Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle
Q28469072	Funneled landscape leads to robustness of cell networks: yeast cell cycle
Q42362181	Funneled potential and flux landscapes dictate the stabilities of both the states and the flow: Fission yeast cell cycle.
Q36214216	Fused Regression for Multi-source Gene Regulatory Network Inference
Q125599737	Fusing an agent-based model of mosquito population dynamics with a statistical reconstruction of spatio-temporal abundance patterns
Q21092569	Fusion and fission of genes define a metric between fungal genomes
Q64990175	FusionPathway: Prediction of pathways and therapeutic targets associated with gene fusions in cancer.
Q33426337	Fuzzy logic analysis of kinase pathway crosstalk in TNF/EGF/insulin-induced signaling
Q96121863	G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation
Q33646754	G-Quadruplex DNA Sequences Are Evolutionarily Conserved and Associated with Distinct Genomic Features in Saccharomyces cerevisiae
Q60957361	G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide
Q115020699	G2Φnet: Relating genotype and biomechanical phenotype of tissues with deep learning
Q35105578	GAGA: a new algorithm for genomic inference of geographic ancestry reveals fine level population substructure in Europeans
Q113308887	GCAEMDA: Predicting miRNA-disease associations via graph convolutional autoencoder
Q95322141	GCNCDA: A new method for predicting circRNA-disease associations based on Graph Convolutional Network Algorithm
Q27323626	GDI-mediated cell polarization in yeast provides precise spatial and temporal control of Cdc42 signaling
Q28481401	GDP release preferentially occurs on the phosphate side in heterotrimeric G-proteins
Q30418169	GEMINI: integrative exploration of genetic variation and genome annotations
Q30550012	GINI: from ISH images to gene interaction networks
Q36406216	GINOM: A statistical framework for assessing interval overlap of multiple genomic features
Q30047203	GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training
Q64114717	GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity
Q111150160	GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction
Q112714989	GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs
Q36053885	GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
Q48133850	GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies.
Q28533696	Gag-Pol processing during HIV-1 virion maturation: a systems biology approach
Q34845105	Gain control network conditions in early sensory coding
Q89474917	Gain control with A-type potassium current: IA as a switch between divisive and subtractive inhibition
Q125469503	Gain modulation and odor concentration invariance in early olfactory networks
Q117356742	Galaxy Training: A powerful framework for teaching!
Q101154777	Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation
Q112611281	Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Q33769736	Gambling in the visual periphery: a conjoint-measurement analysis of human ability to judge visual uncertainty
Q33396207	Game theory of mind
Q33594357	Game theory of social distancing in response to an epidemic
Q36236339	Game-Changing Innovations: How Culture Can Change the Parameters of Its Own Evolution and Induce Abrupt Cultural Shifts
Q113309431	Gamma Oscillations of Spiking Neural Populations Enhance Signal Discrimination
Q27315890	Gamma Synchronization Influences Map Formation Time in a Topological Model of Spatial Learning
Q33308256	Gamma oscillations of spiking neural populations enhance signal discrimination.
Q55051907	Gap junction plasticity as a mechanism to regulate network-wide oscillations.
Q64082408	Gap junctions set the speed and nucleation rate of stage I retinal waves
Q31129248	Gause's principle and the effect of resource partitioning on the dynamical coexistence of replicating templates
Q92749931	Gaussian curvature and the budding kinetics of enveloped viruses
Q113308421	Gaze-dependent evidence accumulation predicts multi-alternative risky choice behaviour
Q114924887	GenOtoScope: Towards automating ACMG classification of variants associated with congenital hearing loss
Q30837669	Gene Expression Noise Enhances Robust Organization of the Early Mammalian Blastocyst.
Q34504116	Gene Expression Switching of Receptor Subunits in Human Brain Development
Q31004904	Gene Prioritization by Compressive Data Fusion and Chaining
Q33513960	Gene circuit analysis of the terminal gap gene huckebein
Q34085597	Gene expression divergence is coupled to evolution of DNA structure in coding regions
Q33900841	Gene expression in the rodent brain is associated with its regional connectivity
Q33769760	Gene expression network reconstruction by convex feature selection when incorporating genetic perturbations
Q100997451	Gene expression noise can promote the fixation of beneficial mutations in fluctuating environments
Q28477065	Gene expression noise in spatial patterning: hunchback promoter structure affects noise amplitude and distribution in Drosophila segmentation
Q33265884	Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity
Q33701750	Gene expression variability within and between human populations and implications toward disease susceptibility
Q108127159	Gene name errors: Lessons not learned
Q34390463	Gene network homology in prokaryotes using a similarity search approach: queries of quorum sensing signal transduction
Q113308563	Gene regulation by a protein translation factor at the single-cell level
Q64086706	Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE)
Q33372102	Gene-boosted assembly of a novel bacterial genome from very short reads
Q34302137	General anesthetics predicted to block the GLIC pore with micromolar affinity
Q58697743	General differential Hebbian learning: Capturing temporal relations between events in neural networks and the brain
Q45737672	General principles of binding between cell surface receptors and multi-specific ligands: A computational study.
Q35417040	General relationship of global topology, local dynamics, and directionality in large-scale brain networks
Q99211781	Generalized estimating equation modeling on correlated microbiome sequencing data with longitudinal measures
Q61812005	Generalizing clusters of similar species as a signature of coexistence under competition
Q91861018	Generalizing to generalize: Humans flexibly switch between compositional and conjunctive structures during reinforcement learning
Q90059869	Generation of Binary Tree-Child phylogenetic networks
Q27333251	Generation of diverse biological forms through combinatorial interactions between tissue polarity and growth
Q34671684	Generative FDG-PET and MRI model of aging and disease progression in Alzheimer's disease
Q30000950	Generative embedding for model-based classification of fMRI data
Q113309416	Genes and (Common) Pathways Underlying Addiction Revealed by Combining and Analyzing Candidate Gene Lists from Multiple Technology Platforms
Q28471939	Genes and (common) pathways underlying drug addiction
Q36060946	Genes as Cues of Relatedness and Social Evolution in Heterogeneous Environments
Q64069356	Genesis of the αβ T-cell receptor
Q35944094	Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability
Q36163704	Genetic Redundancies Enhance Information Transfer in Noisy Regulatory Circuits.
Q35052980	Genetic architecture promotes the evolution and maintenance of cooperation
Q99411829	Genetic buffering and potentiation in metabolism
Q28478625	Genetic co-occurrence network across sequenced microbes
Q113309132	Genetic dissection of complex traits using hierarchical biological knowledge
Q47294854	Genetic drift and selection in many-allele range expansions
Q99561467	Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization
Q52372183	Genetic programming based models in plant tissue culture: An addendum to traditional statistical approach.
Q21563505	Genetic progression and the waiting time to cancer
Q34845153	Genetic selection for context-dependent stochastic phenotypes: Sp1 and TATA mutations increase phenotypic noise in HIV-1 gene expression
Q33719511	Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies
Q100508791	Genome Complexity Browser: Visualization and quantification of genome variability
Q42346691	Genome Landscapes of Disease: Strategies to Predict the Phenotypic Consequences of Human Germline and Somatic Variation
Q35836071	Genome Modeling System: A Knowledge Management Platform for Genomics
Q31044442	Genome comparison of human and non-human malaria parasites reveals species subset-specific genes potentially linked to human disease
Q36267608	Genome composition and phylogeny of microbes predict their co-occurrence in the environment.
Q33332469	Genome landscapes and bacteriophage codon usage
Q34087521	Genome majority vote improves gene predictions
Q24811434	Genome trees from conservation profiles
Q36258695	Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility
Q35799076	Genome-Wide Detection and Analysis of Multifunctional Genes
Q34016175	Genome-scale analysis of translation elongation with a ribosome flow model
Q33366437	Genome-scale computational biology and bioinformatics in Australia
Q33851554	Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect
Q119075871	Genome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloides
Q114870950	Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition
Q35261591	Genome-scale metabolic network validation of Shewanella oneidensis using transposon insertion frequency analysis
Q91757089	Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli
Q28482400	Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142
Q28473829	Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology
Q28474930	Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization
Q33383215	Genome-wide analysis of human disease alleles reveals that their locations are correlated in paralogous proteins
Q21092523	Genome-wide association between branch point properties and alternative splicing
Q112695157	Genome-wide cross-cancer analysis illustrates the critical role of bimodal miRNA in patient survival and drug responses to PI3K inhibitors
Q28475165	Genome-wide functional divergence after the symbiosis of proteobacteria with insects unraveled through a novel computational approach
Q25256779	Genome-wide identification of human functional DNA using a neutral indel model
Q113309660	Genome-wide identification of human functional DNA using a neutral indel model
Q34356312	Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data
Q28473490	Genome-wide modeling of transcription preinitiation complex disassembly mechanisms using ChIP-chip data
Q21145296	Genome-wide prediction and validation of peptides that bind human prosurvival Bcl-2 proteins
Q33326985	Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm.
Q28536750	Genome-wide signatures of transcription factor activity: connecting transcription factors, disease, and small molecules
Q21145686	Genome-wide survey for biologically functional pseudogenes
Q113309634	Genome-wide survey for biologically functional pseudogenes
Q113309672	Genomic Variability within an Organism Exposes its Cell Lineage Tree
Q33617716	Genomic characterization of large heterochromatic gaps in the human genome assembly.
Q57454614	Genomic data integration systematically biases interactome mapping
Q34510118	Genomic hallmarks of genes involved in chromosomal translocations in hematological cancer
Q33316813	Genomic sequence is highly predictive of local nucleosome depletion
Q113309409	Genomic sequence is highly predictive of local nucleosome depletion
Q21563514	Genomic variability within an organism exposes its cell lineage tree
Q30886634	GenomicScape: an easy-to-use web tool for gene expression data analysis. Application to investigate the molecular events in the differentiation of B cells into plasma cells
Q28254700	Genomics and privacy: implications of the new reality of closed data for the field
Q98459637	Genotype networks of 80 quantitative Arabidopsis thaliana phenotypes reveal phenotypic evolvability despite pervasive epistasis
Q64081971	Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor inferred from a large-scale analysis of disease mutations and interactors
Q28752231	Geometric de-noising of protein-protein interaction networks
Q21145373	Geometric interpretation of gene coexpression network analysis
Q34256054	Geometric theory predicts bifurcations in minimal wiring cost trees in biology are flat
Q27319264	Geometrical and mechanical properties control actin filament organization
Q33263254	Geometrically repatterned immunological synapses uncover formation mechanisms
Q30844764	Geometry can provide long-range mechanical guidance for embryogenesis.
Q35688096	Geometry of the Gene Expression Space of Individual Cells
Q35261522	Geometry shapes evolution of early multicellularity
Q33574654	Geospatial characteristics of measles transmission in China during 2005-2014.
Q28486069	Getting more out of biomedical documents with GATE's full lifecycle open source text analytics
Q33332472	Getting started in biological pathway construction and analysis.
Q28757368	Getting started in computational immunology
Q28754735	Getting started in computational mass spectrometry-based proteomics
Q33513962	Getting started in gene expression microarray analysis
Q21090163	Getting started in gene orthology and functional analysis
Q21092574	Getting started in probabilistic graphical models
Q28749140	Getting started in structural phylogenomics
Q21145382	Getting started in text mining
Q33489610	Getting started in text mining: part two.
Q21145659	Getting started in tiling microarray analysis
Q113309527	Global Discriminative Training for Higher-Accuracy Computational Gene Prediction
Q61451737	Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods
Q28478884	Global analysis of small molecule binding to related protein targets
Q115665020	Global and gene-specific translational regulation in Escherichia coli across different conditions
Q33290828	Global and local architecture of the mammalian microRNA-transcription factor regulatory network.
Q33279158	Global discriminative learning for higher-accuracy computational gene prediction
Q21563470	Global disease monitoring and forecasting with Wikipedia
Q112571690	Global diversity and balancing selection of 23 leading Plasmodium falciparum candidate vaccine antigens
Q113308722	Global dynamics of microbial communities emerge from local interaction rules
Q123008083	Global dynamics of neural mass models
Q28473668	Global entrainment of transcriptional systems to periodic inputs
Q35599018	Global mapping of DNA conformational flexibility on Saccharomyces cerevisiae
Q33500128	Global motions of the nuclear pore complex: insights from elastic network models
Q31151064	Global patterns of protein domain gain and loss in superkingdoms
Q33471424	Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans
Q28541596	Global quantitative modeling of chromatin factor interactions
Q36175986	Glucose Oscillations Can Activate an Endogenous Oscillator in Pancreatic Islets
Q43071137	Glutamate mediated astrocytic filtering of neuronal activity
Q27322664	Glutamate-bound NMDARs arising from in vivo-like network activity extend spatio-temporal integration in a L5 cortical pyramidal cell model
Q35347611	Glycolysis is governed by growth regime and simple enzyme regulation in adherent MDCK cells
Q28555227	Glycoside Hydrolases across Environmental Microbial Communities
Q64064710	Goal-related feedback guides motor exploration and redundancy resolution in human motor skill acquisition
Q36412325	Good enough practices in scientific computing
Q34276961	Google goes cancer: improving outcome prediction for cancer patients by network-based ranking of marker genes
Q33500132	Googling food webs: can an eigenvector measure species' importance for coextinctions?
Q36054216	Graded, Dynamically Routable Information Processing with Synfire-Gated Synfire Chains
Q30469392	Gradients and modulation of K(+) channels optimize temporal accuracy in networks of auditory neurons
Q33365747	Grandmothering and cognitive resources are required for the emergence of menopause and extensive post-reproductive lifespan
Q64234927	Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes
Q33691388	Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata
Q89830523	Graph-based description of tertiary lymphoid organs at single-cell level
Q100953690	Graph-theoretical formulation of the generalized epitope-based vaccine design problem
Q113308409	Graphia: A platform for the graph-based visualisation and analysis of high dimensional data
Q112710850	Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations
Q33510910	Grasping objects with environmentally induced position uncertainty
Q113238614	Grey-box modeling and hypothesis testing of functional near-infrared spectroscopy-based cerebrovascular reactivity to anodal high-definition tDCS in healthy humans
Q21145320	Grid cells, place cells, and geodesic generalization for spatial reinforcement learning
Q33417622	GrowMatch: an automated method for reconciling in silico/in vivo growth predictions
Q38657581	Growth of bacteria in 3-d colonies
Q35953761	H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation
Q28551145	HER2+ Cancer Cell Dependence on PI3K vs. MAPK Signaling Axes Is Determined by Expression of EGFR, ERBB3 and CDKN1B
Q30371471	HIV competition dynamics over sexual networks: first comer advantage conserves founder effects.
Q28475647	HIV promoter integration site primarily modulates transcriptional burst size rather than frequency
Q28478993	HIV-1 polymerase inhibition by nucleoside analogs: cellular- and kinetic parameters of efficacy, susceptibility and resistance selection
Q28469203	HIV-1 subtype B protease and reverse transcriptase amino acid covariation
Q41489012	HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes
Q28652424	HPV clearance and the neglected role of stochasticity
Q47553064	HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells
Q113746453	Habitat loss exacerbates pathogen spread: An Agent-based model of avian influenza infection in migratory waterfowl
Q113308394	Haisu: Hierarchically supervised nonlinear dimensionality reduction
Q112718836	Hamming-shifting graph of genomic short reads: Efficient construction and its application for compression
Q28536028	Handling uncertainty in dynamic models: the pentose phosphate pathway in Trypanosoma brucei
Q108126788	Hands-on training about overfitting
Q30787180	HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data
Q52642743	Haptic communication between humans is tuned by the hard or soft mechanics of interaction.
Q33793185	Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI).
Q35053012	Harnessing diversity towards the reconstructing of large scale gene regulatory networks
Q60933642	Harnessing formal concepts of biological mechanism to analyze human disease
Q27335598	Harvesting candidate genes responsible for serious adverse drug reactions from a chemical-protein interactome
Q97556914	Heart failure-induced atrial remodelling promotes electrical and conduction alternans
Q35339906	Heat shock partially dissociates the overlapping modules of the yeast protein-protein interaction network: a systems level model of adaptation.
Q33301924	Heat shock response in CHO mammalian cells is controlled by a nonlinear stochastic process
Q113309459	Heat shock response in CHO mammalian cells is controlled by a nonlinear stochastic process
Q112563748	Hebbian plasticity in parallel synaptic pathways: A circuit mechanism for systems memory consolidation
Q35231307	Hedging your bets: intermediate movements as optimal behavior in the context of an incomplete decision
Q113309477	Helicobacter pylori Evolution: Lineage-Specific Adaptations in Homologs of Eukaryotic Sel1-Like Genes
Q33294056	Helicobacter pylori evolution: lineage- specific adaptations in homologs of eukaryotic Sel1-like genes
Q113308645	Helix 8 in chemotactic receptors of the complement system
Q96121691	HemoMIPs-Automated analysis and result reporting pipeline for targeted sequencing data
Q34211448	Hemodynamic traveling waves in human visual cortex.
Q113309143	Hemodynamics-driven mathematical model of first and second heart sound generation
Q31086889	HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data
Q50062525	Heritable tumor cell division rate heterogeneity induces clonal dominance.
Q34464387	Herpes simplex virus-2 genital tract shedding is not predictable over months or years in infected persons
Q113309106	Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling
Q30423179	Heterogeneity and convergence of olfactory first-order neurons account for the high speed and sensitivity of second-order neurons.
Q89467101	Heterogeneity coordinates bacterial multi-gene expression in single cells
Q113265276	Heterogeneity of Rift Valley fever virus transmission potential across livestock hosts, quantified through a model-based analysis of host viral load and vector infection
Q28536895	Heterogeneity, mixing, and the spatial scales of mosquito-borne pathogen transmission
Q30300708	Heterogeneous CD8+ T cell migration in the lymph node in the absence of inflammation revealed by quantitative migration analysis
Q30979471	Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes
Q30847280	Heterogeneous firing responses predict diverse couplings to presynaptic activity in mice layer V pyramidal neurons
Q33954362	Heterogeneous host susceptibility enhances prevalence of mixed-genotype micro-parasite infections
Q90279987	Heterogeneous responses to low level death receptor activation are explained by random molecular assembly of the Caspase-8 activation platform
Q92203456	Heterogeneous susceptibility to rotavirus infection and gastroenteritis in two birth cohort studies: Parameter estimation and epidemiological implications
Q97556956	Heterogeneous, delayed-onset killing by multiple-hitting T cells: Stochastic simulations to assess methods for analysis of imaging data
Q35627802	Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.
Q104483669	Hi-C implementation of genome structure for in silico models of radiation-induced DNA damage
Q113308538	HiCImpute: A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data
Q113308857	Hidden Markov Modeling with HMMTeacher
Q92846422	Hierarchical Bayesian inference for concurrent model fitting and comparison for group studies
Q36224652	Hierarchical Post-transcriptional Regulation of Colicin E2 Expression in Escherichia coli
Q113309499	Hierarchical Processing of Auditory Objects in Humans
Q34845052	Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples
Q30157152	Hierarchical modeling of activation mechanisms in the ABL and EGFR kinase domains: thermodynamic and mechanistic catalysts of kinase activation by cancer mutations
Q30492756	Hierarchical models in the brain
Q30544204	Hierarchical processing of auditory objects in humans
Q113309182	Hierarchy and control of ageing-related methylation networks
Q35679816	High Accuracy Decoding of Dynamical Motion from a Large Retinal Population
Q36257638	High Affinity vs. Native Fibronectin in the Modulation of αvβ3 Integrin Conformational Dynamics: Insights from Computational Analyses and Implications for Molecular Design
Q36326628	High GC content causes orphan proteins to be intrinsically disordered.
Q27319896	High Stimulus-Related Information in Barrel Cortex Inhibitory Interneurons
Q28477810	High degree of heterogeneity in Alzheimer's disease progression patterns
Q33255329	High epitope expression levels increase competition between T cells
Q113309599	High epitope expression levels increase competition between T cells
Q113308735	High fidelity epigenetic inheritance: Information theoretic model predicts threshold filling of histone modifications post replication
Q34625272	High prevalence of multistability of rest states and bursting in a database of a model neuron
Q34388423	High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints
Q33691422	High resolution models of transcription factor-DNA affinities improve in vitro and in vivo binding predictions
Q36177087	High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs
Q36012452	High-Degree Neurons Feed Cortical Computations
Q30368272	High-Frequency Resonance in the Gerbil Medial Superior Olive.
Q35872979	High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.
Q36412319	High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE
Q92015896	High-dimensional mediation analysis in survival models
Q34549456	High-fidelity coding with correlated neurons
Q113308709	High-frequency oscillations and sequence generation in two-population models of hippocampal region CA1
Q113238612	High-integrity human intervention in ecosystems: Tracking self-organization modes
Q36372082	High-order epistasis shapes evolutionary trajectories
Q28476233	High-performance drug discovery: computational screening by combining docking and molecular dynamics simulations
Q28477385	High-precision, in vitro validation of the sequestration mechanism for generating ultrasensitive dose-response curves in regulatory networks
Q47215913	High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock.
Q35172794	High-resolution modeling of transmembrane helical protein structures from distant homologues
Q113309353	High-throughput Interpretation of Killer-cell Immunoglobulin-like Receptor Short-read Sequencing Data with PING
Q34426314	High-throughput computer method for 3D neuronal structure reconstruction from the image stack of the Drosophila brain and its applications
Q36107931	Higher-Order Synaptic Interactions Coordinate Dynamics in Recurrent Networks
Q36347069	Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors
Q35570738	Highly loaded behavior of kinesins increases the robustness of transport under high resisting loads
Q34205837	Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data
Q113308912	HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks
Q108126728	HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data
Q35993629	Hippocampal CA1 Ripples as Inhibitory Transients
Q35489542	Hippocampal remapping is constrained by sparseness rather than capacity
Q38610127	Histologic and biochemical alterations predict pulmonary mechanical dysfunction in aging mice with chronic lung inflammation
Q35182079	Histone modifications are associated with transcript isoform diversity in normal and cancer cells
Q36400544	Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain
Q114054812	Histone tails cooperate to control the breathing of genomic nucleosomes
Q33778592	Historical pedigree reconstruction from extant populations using PArtitioning of RElatives (PREPARE).
Q50047245	History dependence in insect flight decisions during odor tracking.
Q113308760	Homeostatic control of synaptic rewiring in recurrent networks induces the formation of stable memory engrams
Q34262998	Homeostatic scaling of excitability in recurrent neural networks
Q64953610	Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes.
Q92188304	Host contact dynamics shapes richness and dominance of pathogen strains
Q33363069	Host control of malaria infections: constraints on immune and erythropoeitic response kinetics
Q89629190	Host factor prioritization for pan-viral genetic perturbation screens using random intercept models and network propagation
Q124016891	Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2
Q34961655	Host mobility drives pathogen competition in spatially structured populations
Q113308573	Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa
Q40084961	Host population structure impedes reversion to drug sensitivity after discontinuation of treatment
Q34722526	Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus
Q60933626	Hosts mobility and spatial spread of Rickettsia rickettsii
Q28541374	Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity
Q35008755	How Can PLoS Computational Biology help the biological sciences?
Q35686986	How Co-translational Folding of Multi-domain Protein Is Affected by Elongation Schedule: Molecular Simulations
Q91728885	How Dendrites Affect Online Recognition Memory
Q36163700	How Do Efficient Coding Strategies Depend on Origins of Noise in Neural Circuits?
Q27317194	How Obstacles Perturb Population Fronts and Alter Their Genetic Structure
Q37119204	How People Use Social Information to Find out What to Want in the Paradigmatic Case of Inter-temporal Preferences
Q64117668	How adaptive plasticity evolves when selected against
Q28545075	How anacetrapib inhibits the activity of the cholesteryl ester transfer protein? Perspective through atomistic simulations
Q35572058	How attention can create synaptic tags for the learning of working memories in sequential tasks
Q42362020	How can computation advance microbiome research?
Q33761257	How cations can assist DNase I in DNA binding and hydrolysis
Q27331922	How cells integrate complex stimuli: the effect of feedback from phosphoinositides and cell shape on cell polarization and motility
Q113308998	How conformity can lead to polarised social behaviour
Q113308781	How does a small molecule bind at a cryptic binding site?
Q33247444	How does cross-reactive stimulation affect the longevity of CD8+ T cell memory?
Q113309632	How does cross-reactive stimulation affect the longevity of CD8+ T cell memory?
Q57168838	How ecological feedbacks between human population and land cover influence sustainability
Q34440593	How entorhinal grid cells may learn multiple spatial scales from a dorsoventral gradient of cell response rates in a self-organizing map
Q55341628	How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes.
Q36337880	How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation.
Q34557951	How evolving heterogeneity distributions of resource allocation strategies shape mortality patterns.
Q33320176	How force might activate talin's vinculin binding sites: SMD reveals a structural mechanism
Q58459689	How force might activate talin's vinculin binding sites: SMD reveals a structural mechanism
Q64272238	How good are pathogenicity predictors in detecting benign variants?
Q114596584	How growers make decisions impacts plant disease control
Q33954326	How haptic size sensations improve distance perception
Q33573540	How informative are spatial CA3 representations established by the dentate gyrus?
Q34071339	How landscape heterogeneity frames optimal diffusivity in searching processes
Q34979339	How microRNA and transcription factor co-regulatory networks affect osteosarcoma cell proliferation
Q28478322	How modeling can reconcile apparently discrepant experimental results: the case of pacemaking in dopaminergic neurons
Q33900831	How molecular motors are arranged on a cargo is important for vesicular transport
Q112583936	How multisite phosphorylation impacts the conformations of intrinsically disordered proteins
Q33780970	How noisy adaptation of neurons shapes interspike interval histograms and correlations
Q33332450	How protein stability and new functions trade off
Q123760279	How public can public goods be? Environmental context shapes the evolutionary ecology of partially private goods
Q125346990	How public reaction to disease information across scales and the impacts of vector control methods influence disease prevalence and control efficacy
Q60310164	How pupil responses track value-based decision-making during and after reinforcement learning
Q27329070	How random is social behaviour? Disentangling social complexity through the study of a wild house mouse population
Q30461293	How recent history affects perception: the normative approach and its heuristic approximation
Q34565887	How sensitive is the human visual system to the local statistics of natural images?
Q65001979	How single neuron properties shape chaotic dynamics and signal transmission in random neural networks.
Q55004080	How stimulation frequency and intensity impact on the long-lasting effects of coordinated reset stimulation.
Q33916652	How structure determines correlations in neuronal networks
Q28472392	How synchronization protects from noise
Q35152109	How the brain decides when to work and when to rest: dissociation of implicit-reactive from explicit-predictive computational processes
Q34789253	How the dynamics and structure of sexual contact networks shape pathogen phylogenies
Q113309019	How the spleen reshapes and retains young and old red blood cells: A computational investigation
Q112431491	How the storage effect and the number of temporal niches affect biodiversity in stochastic and seasonal environments
Q113308882	How the value of the environment controls persistence in visual search
Q28475852	How thioredoxin dissociates its mixed disulfide
Q28554216	How to Distinguish Conformational Selection and Induced Fit Based on Chemical Relaxation Rates
Q31110456	How to Estimate Epidemic Risk from Incomplete Contact Diaries Data?
Q35786630	How to Grow a Computational Biology Lab
Q33347120	How to advance open international scientific exchange
Q91861366	How to fit in: The learning principles of cell differentiation
Q33450568	How to get the most out of your curation effort
Q27337528	How to record a million synaptic weights in a hippocampal slice
Q33535866	How to understand the cell by breaking it: network analysis of gene perturbation screens
Q43165011	How to write a presubmission inquiry
Q50047285	Hub connectivity, neuronal diversity, and gene expression in the Caenorhabditis elegans connectome.
Q36234561	Human Inferences about Sequences: A Minimal Transition Probability Model
Q36016668	Human Leg Model Predicts Muscle Forces, States, and Energetics during Walking
Q56962955	Human Pavlovian fear conditioning conforms to probabilistic learning
Q33562529	Human behavioral complexity peaks at age 25
Q28472174	Human cancer protein-protein interaction network: a structural perspective
Q89938795	Human decision making anticipates future performance in motor learning
Q113308712	Human discrimination and modeling of high-frequency complex tones shed light on the neural codes for pitch
Q35216525	Human dominant disease genes are enriched in paralogs originating from whole genome duplication
Q35018004	Human genome replication proceeds through four chromatin states.
Q34699688	Human germline antibody gene segments encode polyspecific antibodies
Q34693149	Human leg model predicts ankle muscle-tendon morphology, state, roles and energetics in walking
Q33504519	Human miRNA precursors with box H/ACA snoRNA features
Q36276859	Human mobility and the spatial transmission of influenza in the United States
Q34346072	Human monogenic disease genes have frequently functionally redundant paralogs
Q34411820	Human motor cortical activity is selectively phase-entrained on underlying rhythms.
Q91709588	Human online adaptation to changes in prior probability
Q92001371	Human representation of multimodal distributions as clusters of samples
Q34154424	Human visual search does not maximize the post-saccadic probability of identifying targets
Q91860967	Humans adapt their anticipatory eye movements to the volatility of visual motion properties
Q113309572	Humans can adopt optimal discounting strategy under real-time constraints
Q33263253	Humans can adopt optimal discounting strategy under real-time constraints.
Q64058458	Humans use multi-objective control to regulate lateral foot placement when walking
Q90186515	Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization
Q113309112	Hybrid computational modeling demonstrates the utility of simulating complex cellular networks in type 1 diabetes
Q113308916	Hybrid dedicated and distributed coding in PMd/M1 provides separation and interaction of bilateral arm signals
Q34733535	Hybrid equation/agent-based model of ischemia-induced hyperemia and pressure ulcer formation predicts greater propensity to ulcerate in subjects with spinal cord injury
Q38686320	Hybrid modeling and prediction of dynamical systems
Q34388413	Hybrid models and biological model reduction with PyDSTool
Q113308806	Hybrid simulation modelling of networks of heterogeneous care homes and the inter-facility spread of Covid-19 by sharing staff
Q21092519	Hybrid spreading mechanisms and T cell activation shape the dynamics of HIV-1 infection
Q55299659	Hybrid stochastic framework predicts efficacy of prophylaxis against HIV: An example with different dolutegravir prophylaxis schemes.
Q91806107	Hydra: A mixture modeling framework for subtyping pediatric cancer cohorts using multimodal gene expression signatures
Q35884133	Hydrodynamic Radii of Intrinsically Disordered Proteins Determined from Experimental Polyproline II Propensities
Q64090130	Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length
Q33526239	Hydrogen-bond driven loop-closure kinetics in unfolded polypeptide chains
Q27318724	Hydrophobic Gating of Ion Permeation in Magnesium Channel CorA
Q28543638	Hydrophobic compounds reshape membrane domains
Q26864217	Hydrophobicity and charge shape cellular metabolite concentrations
Q27321479	Hydrophobin film structure for HFBI and HFBII and mechanism for accelerated film formation
Q33521695	Hyperbolic planforms in relation to visual edges and textures perception
Q34521204	Hypercycle
Q90942802	Hypergraph-based connectivity measures for signaling pathway topologies
Q33455494	Hypergraphs and cellular networks
Q33422940	Hypertrophy and/or Hyperplasia: Dynamics of Adipose Tissue Growth
Q33396197	I am not a scientist, I am a number
Q28543211	IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform
Q100391621	IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
Q112707407	INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation
Q104558056	IOCBIO Kinetics: An open-source software solution for analysis of data traces
Q113308704	IQCELL: A platform for predicting the effect of gene perturbations on developmental trajectories using single-cell RNA-seq data
Q62838139	IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis
Q28543145	ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus
Q21145677	ISCB Honors Michael S. Waterman and Mathieu Blanchette
Q30484875	ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature
Q21092516	ISCB computational biology Wikipedia competition
Q21145375	ISCB honors David Haussler and Aviv Regev
Q21145664	ISCB honors Temple F. Smith and Eran Segal
Q28601997	ISCB's Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing
Q24816835	ISMB 2005 Conference Report
Q21145690	ISMB 2006
Q21092572	ISMB 2008 Toronto
Q28659928	ISMB 2014--the premier conference for the World's Computational Biologists
Q46077142	ISMB/ECCB 2007: The Premier Conference on Computational Biology.
Q46006419	ISMB/ECCB Rebooted: 2015 Brings Major Update to the Meeting Program.
Q113309113	ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer
Q113309237	IUSMMT: Survival mediation analysis of gene expression with multiple DNA methylation exposures and its application to cancers of TCGA
Q64080131	I_MDS: an inflammatory bowel disease molecular activity score to classify patients with differing disease-driving pathways and therapeutic response to anti-TNF treatment
Q113308804	Ictal wavefront propagation in slices and simulations with conductance-based refractory density model
Q113309642	Identification and Classification of Conserved RNA Secondary Structures in the Human Genome
Q33250407	Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes
Q113309617	Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes
Q21145687	Identification and classification of conserved RNA secondary structures in the human genome
Q91396075	Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity
Q24318965	Identification and rational redesign of peptide ligands to CRIP1, a novel biomarker for cancers
Q36095789	Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells
Q28553629	Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks
Q36262482	Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs.
Q113309621	Identification of Genome-Scale Metabolic Network Models Using Experimentally Measured Flux Profiles
Q35840001	Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models
Q35693465	Identification of Ohnolog Genes Originating from Whole Genome Duplication in Early Vertebrates, Based on Synteny Comparison across Multiple Genomes
Q34539738	Identification of a functional connectome for long-term fear memory in mice
Q28475736	Identification of a kinase profile that predicts chromosome damage induced by small molecule kinase inhibitors
Q31036394	Identification of a novel class of farnesylation targets by structure-based modeling of binding specificity
Q33486465	Identification of a topological characteristic responsible for the biological robustness of regulatory networks
Q35233964	Identification of allelic imbalance with a statistical model for subtle genomic mosaicism
Q48150041	Identification of allosteric inhibitors of the ecto-5'-nucleotidase (CD73) targeting the dimer interface.
Q55229208	Identification of animal behavioral strategies by inverse reinforcement learning.
Q63437330	Identification of avian flapping motion from non-volant winged dinosaurs based on modal effective mass analysis
Q28477914	Identification of biochemical network modules based on shortest retroactive distances
Q35539823	Identification of constrained cancer driver genes based on mutation timing
Q33529036	Identification of crosstalk between phosphoprotein signaling pathways in RAW 264.7 macrophage cells
Q113308766	Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods
Q58700489	Identification of excitatory-inhibitory links and network topology in large-scale neuronal assemblies from multi-electrode recordings
Q33270508	Identification of functional subclasses in the DJ-1 superfamily proteins
Q91089212	Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets
Q28469016	Identification of genome-scale metabolic network models using experimentally measured flux profiles
Q21145325	Identification of hammerhead ribozymes in all domains of life reveals novel structural variations
Q45944502	Identification of immune signatures predictive of clinical protection from malaria.
Q28535326	Identification of key hinge residues important for nucleotide-dependent allostery in E. coli Hsp70/DnaK
Q28473855	Identification of key processes that control tumor necrosis factor availability in a tuberculosis granuloma
Q33396201	Identification of mechanosensitive genes during embryonic bone formation
Q34288745	Identification of molecular pathologies sufficient to cause neuropathic excitability in primary somatosensory afferents using dynamical systems theory
Q33522193	Identification of networks of co-occurring, tumor-related DNA copy number changes using a genome-wide scoring approach
Q31154854	Identification of new IκBα complexes by an iterative experimental and mathematical modeling approach
Q64072302	Identification of pathways associated with chemosensitivity through network embedding
Q113308858	Identification of periodic attractors in Boolean networks using a priori information
Q28477481	Identification of potent EGFR inhibitors from TCM Database@Taiwan
Q28474725	Identification of potential pathway mediation targets in Toll-like receptor signaling
Q113309350	Identification of structures for ion channel kinetic models
Q113309400	Identification of synaptic targets of Drosophila Pumilio
Q28472327	Identification of synaptic targets of Drosophila pumilio
Q33266433	Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms
Q113308812	Identification of upstream transcription factor binding sites in orthologous genes using mixed Student’s t-test statistics
Q33471417	Identification of yeast transcriptional regulation networks using multivariate random forests
Q60907124	Identifying (un)controllable dynamical behavior in complex networks
Q36162459	Identifying Anatomical Origins of Coexisting Oscillations in the Cortical Microcircuit
Q28608346	Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets
Q31068210	Identifying Malaria Transmission Foci for Elimination Using Human Mobility Data
Q36008410	Identifying Network Perturbation in Cancer
Q36253760	Identifying T Cell Receptors from High-Throughput Sequencing: Dealing with Promiscuity in TCRα and TCRβ Pairing
Q33769754	Identifying a high fraction of the human genome to be under selective constraint using GERP++.
Q35231441	Identifying and tracking simulated synaptic inputs from neuronal firing: insights from in vitro experiments
Q28477327	Identifying causal genes and dysregulated pathways in complex diseases
Q28655354	Identifying cell types from spatially referenced single-cell expression datasets
Q30382498	Identifying changes in selective constraints: host shifts in influenza.
Q28473568	Identifying cognate binding pairs among a large set of paralogs: the case of PE/PPE proteins of Mycobacterium tuberculosis
Q113308436	Identifying control ensembles for information processing within the cortico-basal ganglia-thalamic circuit
Q35191078	Identifying crucial parameter correlations maintaining bursting activity
Q33491540	Identifying currents in the gene pool for bacterial populations using an integrative approach
Q91796517	Identifying determinants of persistent MRSA bacteremia using mathematical modeling
Q47121529	Identifying direct contacts between protein complex subunits from their conditional dependence in proteomics datasets.
Q28472011	Identifying drug effects via pathway alterations using an integer linear programming optimization formulation on phosphoproteomic data
Q115020713	Identifying enhancer properties associated with genetic risk for complex traits using regulome-wide association studies
Q55502793	Identifying functional groups among the diverse, recombining antigenic var genes of the malaria parasite Plasmodium falciparum from a local community in Ghana.
Q48259913	Identifying human diamine sensors for death related putrescine and cadaverine molecules
Q92311615	Identifying important parameters in the inflammatory process with a mathematical model of immune cell influx and macrophage polarization
Q64234952	Identifying individual risk rare variants using protein structure guided local tests (POINT)
Q45783463	Identifying influential neighbors in animal flocking
Q99613391	Identifying locations of re-entrant drivers from patient-specific distribution of fibrosis in the left atrium
Q103743867	Identifying longevity associated genes by integrating gene expression and curated annotations
Q126509973	Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism
Q92749975	Identifying nonlinear dynamical systems via generative recurrent neural networks with applications to fMRI
Q42369473	Identifying parameter regions for multistationarity
Q113309034	Identifying prognostic pairwise relationships among bacterial species in microbiome studies
Q112574439	Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper
Q52570105	Identifying robust hysteresis in networks.
Q27321390	Identifying selection in the within-host evolution of influenza using viral sequence data
Q35586786	Identifying single copy orthologs in Metazoa
Q33728740	Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes.
Q30372035	Identifying the important HIV-1 recombination breakpoints.
Q64230555	Identifying the mechanism for superdiffusivity in mouse fibroblast motility
Q21145345	Identifying the rules of engagement enabling leukocyte rolling, activation, and adhesion
Q33594352	Identifying tightly regulated and variably expressed networks by Differential Rank Conservation (DIRAC).
Q34557971	Identifying transmission cycles at the human-animal interface: the role of animal reservoirs in maintaining gambiense human african trypanosomiasis
Q35126238	If you can't measure it, you can't manage it.
Q113308419	If you don’t let it in, you don’t have to get it out: Thought preemption as a method to control unwanted thoughts
Q113308427	Ig-VAE: Generative modeling of protein structure by direct 3D coordinate generation
Q47162034	Image-based model of the spectrin cytoskeleton for red blood cell simulation.
Q33293154	Image-based modeling reveals dynamic redistribution of DNA damage into nuclear sub-domains
Q113308478	Image-based parameter inference for epithelial mechanics
Q48097482	Imaging of neural oscillations with embedded inferential and group prevalence statistics.
Q55076916	Imbalanced amplification: A mechanism of amplification and suppression from local imbalance of excitation and inhibition in cortical circuits.
Q33257086	Imitating manual curation of text-mined facts in biomedicine
Q57265777	Imitating manual curation of text-mined facts in biomedicine
Q36141198	Immersed Boundary Models for Quantifying Flow-Induced Mechanical Stimuli on Stem Cells Seeded on 3D Scaffolds in Perfusion Bioreactors
Q113309386	Immune selection suppresses the emergence of drug resistance in malaria parasites but facilitates its spread
Q28539048	Immune-mediated competition in rodent malaria is most likely caused by induced changes in innate immune clearance of merozoites
Q97517595	Immunization strategies in networks with missing data
Q35529735	Immuno-epidemiological modeling of HIV-1 predicts high heritability of the set-point virus load, while selection for CTL escape dominates virulence evolution
Q21145682	Immunoinformatics comes of age
Q36091605	Impact of Heterogeneity in Sexual Behavior on Effectiveness in Reducing HIV Transmission with Test-and-Treat Strategy
Q36222134	Impact of Lipid Composition and Receptor Conformation on the Spatio-temporal Organization of μ-Opioid Receptors in a Multi-component Plasma Membrane Model
Q30378153	Impact of School Cycles and Environmental Forcing on the Timing of Pandemic Influenza Activity in Mexican States, May-December 2009.
Q34236600	Impact of adaptation currents on synchronization of coupled exponential integrate-and-fire neurons
Q21145337	Impact of dendritic size and dendritic topology on burst firing in pyramidal cells
Q28537982	Impact of different oseltamivir regimens on treating influenza A virus infection and resistance emergence: insights from a modelling study
Q21145291	Impact of dimensionality and network disruption on microrheology of cancer cells in 3D environments
Q33900820	Impact of fast sodium channel inactivation on spike threshold dynamics and synaptic integration
Q30849041	Impact of limited solvent capacity on metabolic rate, enzyme activities, and metabolite concentrations of S. cerevisiae glycolysis
Q27333458	Impact of microscopic motility on the swimming behavior of parasites: straighter trypanosomes are more directional
Q34211424	Impact of network structure and cellular response on spike time correlations
Q28533868	Impact of ribosomal modification on the binding of the antibiotic telithromycin using a combined grand canonical monte carlo/molecular dynamics simulation approach
Q33813481	Impact of sarcoplasmic reticulum calcium release on calcium dynamics and action potential morphology in human atrial myocytes: a computational study
Q34468908	Impact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networks
Q35968588	Impaired Air Conditioning within the Nasal Cavity in Flat-Faced Homo
Q64103500	Imperfect Bayesian inference in visual perception
Q28552680	Implementation Considerations, Not Topological Differences, Are the Main Determinants of Noise Suppression Properties in Feedback and Incoherent Feedforward Circuits
Q35909908	Implementation of Complex Biological Logic Circuits Using Spatially Distributed Multicellular Consortia
Q112702589	Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations
Q113309403	Implementing Arithmetic and Other Analytic Operations by Transcriptional Regulation
Q28472646	Implementing arithmetic and other analytic operations by transcriptional regulation
Q55301214	Implications for human odor sensing revealed from the statistics of odorant-receptor interactions.
Q27317424	Implications of Heterogeneous Biting Exposure and Animal Hosts on Trypanosomiasis brucei gambiense Transmission and Control
Q58494280	Implications of alternative routes to APC/C inhibition by the mitotic checkpoint complex
Q34211431	Implications of behavioral architecture for the evolution of self-organized division of labor
Q96693342	Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans
Q35788650	Implicit Value Updating Explains Transitive Inference Performance: The Betasort Model
Q34341336	Importance of electrostatic interactions in the association of intrinsically disordered histone chaperone Chz1 and histone H2A.Z-H2B.
Q34566039	Important miRs of pathways in different tumor types
Q36199599	Improved Measures of Integrated Information
Q31119097	Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets.
Q36226747	Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns
Q35400135	Improved contact predictions using the recognition of protein like contact patterns
Q35235172	Improved estimation and interpretation of correlations in neural circuits
Q113309155	Improved estimation of time-varying reproduction numbers at low case incidence and between epidemic waves
Q112643110	Improved prediction of smoking status via isoform-aware RNA-seq deep learning models
Q35582267	Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data
Q112695077	Improved transcriptome assembly using a hybrid of long and short reads with StringTie
Q36089866	Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence
Q35636834	Improving 3D Genome Reconstructions Using Orthologous and Functional Constraints
Q35840618	Improving Collective Estimations Using Resistance to Social Influence
Q29248802	Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets
Q34720254	Improving breast cancer survival analysis through competition-based multidimensional modeling
Q34442613	Improving contact prediction along three dimensions
Q101044740	Improving homology modeling from low-sequence identity templates in Rosetta: A case study in GPCRs
Q47224210	Improving pairwise comparison of protein sequences with domain co-occurrence.
Q28534701	Improving pharmacokinetic-pharmacodynamic modeling to investigate anti-infective chemotherapy with application to the current generation of antimalarial drugs
Q104753960	Improving probabilistic infectious disease forecasting through coherence
Q95302807	Improving reproducibility in computational biology research
Q60025453	Improving the Caenorhabditis elegans Genome Annotation using Machine Learning
Q21145670	Improving the Caenorhabditis elegans genome annotation using machine learning
Q91860978	Improving the coverage of credible sets in Bayesian genetic fine-mapping
Q30696947	Improving the modeling of disease data from the government surveillance system: a case study on malaria in the Brazilian Amazon
Q24811498	Improving the precision of the structure-function relationship by considering phylogenetic context
Q64229867	Improving the reliability of model-based decision-making estimates in the two-stage decision task with reaction-times and drift-diffusion modeling
Q110696270	Improving the understanding of cytoneme-mediated morphogen gradients by in silico modeling
Q47094111	Improving virtual screening of G protein-coupled receptors via ligand-directed modeling.
Q36289441	Imputation for transcription factor binding predictions based on deep learning
Q45945616	In Memoriam: Rolf Kötter (1961–2010).
Q21145671	In Remembrance: Reinhart Heinrich 1946–2006
Q113309440	In Silico Elucidation of the Molecular Mechanism Defining the Adverse Effect of Selective Estrogen Receptor Modulators
Q36209598	In Silico Knockout Studies of Xenophagic Capturing of Salmonella
Q36140933	In Silico Oncology: Quantification of the In Vivo Antitumor Efficacy of Cisplatin-Based Doublet Therapy in Non-Small Cell Lung Cancer (NSCLC) through a Multiscale Mechanistic Model
Q112648075	In heart failure reactivation of RNA-binding proteins is associated with the expression of 1,523 fetal-specific isoforms
Q35828145	In search of the biological significance of modular structures in protein networks
Q49925385	In silico analysis of antibiotic-induced Clostridium difficile infection: Remediation techniques and biological adaptations.
Q28535111	In silico analysis of cell cycle synchronisation effects in radiotherapy of tumour spheroids
Q95941832	In silico analysis of hypoxia activated prodrugs in combination with anti angiogenic therapy through nanocell delivery
Q28472764	In silico analysis of the apolipoprotein E and the amyloid beta peptide interaction: misfolding induced by frustration of the salt bridge network
Q36407327	In silico assessment of genetic variation in KCNA5 reveals multiple mechanisms of human atrial arrhythmogenesis
Q98296683	In silico co-factor balance estimation using constraint-based modelling informs metabolic engineering in Escherichia coli
Q28472006	In silico detection of sequence variations modifying transcriptional regulation
Q113309413	In silico detection of sequence variations modifying transcriptional regulation
Q98471494	In silico discovery and biological validation of ligands of FAD synthase, a promising new antimicrobial target
Q28471679	In silico elucidation of the molecular mechanism defining the adverse effect of selective estrogen receptor modulators
Q33886126	In silico elucidation of the recognition dynamics of ubiquitin
Q21090161	In silico evidence for gluconeogenesis from fatty acids in humans
Q27332126	In silico experimentation of glioma microenvironment development and anti-tumor therapy
Q113308894	In silico identification of potential calcium dynamics and sarcomere targets for recovering left ventricular function in rat heart failure with preserved ejection fraction
Q89876287	In silico investigation of the mechanisms underlying atrial fibrillation due to impaired Pitx2
Q104105191	In silico mutagenesis of human ACE2 with S protein and translational efficiency explain SARS-CoV-2 infectivity in different species
Q102384988	In silico prediction of ARB resistance: A first step in creating personalized ARB therapy
Q112649496	In silico prediction of HIV-1-host molecular interactions and their directionality
Q27322548	In silico screening of the key cellular remodeling targets in chronic atrial fibrillation
Q27323121	In silico single-molecule manipulation of DNA with rigid body dynamics
Q55191103	In silico study of multicellular automaticity of heterogeneous cardiac cell monolayers: Effects of automaticity strength and structural linear anisotropy.
Q123008108	In the Body's Eye: The computational anatomy of interoceptive inference
Q34504744	In the multi-domain protein adenylate kinase, domain insertion facilitates cooperative folding while accommodating function at domain interfaces
Q64064718	In vitro and in silico multidimensional modeling of oncolytic tumor virotherapy dynamics
Q113308718	In vitro machine learning-based CAR T immunological synapse quality measurements correlate with patient clinical outcomes
Q55166354	In vivo and in silico dynamics of the development of Metabolic Syndrome.
Q33981260	In vivo conditions induce faithful encoding of stimuli by reducing nonlinear synchronization in vestibular sensory neurons
Q35317388	In vivo volume and hemoglobin dynamics of human red blood cells
Q34649503	In-silico assessment of protein-protein electron transfer. a case study: cytochrome c peroxidase--cytochrome c.
Q57181987	In-silico dynamic analysis of cytotoxic drug administration to solid tumours: Effect of binding affinity and vessel permeability
Q27322499	In-vivo real-time control of protein expression from endogenous and synthetic gene networks
Q113309133	Inactivation mode of sodium channels defines the different maximal firing rates of conventional versus atypical midbrain dopamine neurons
Q36132279	Including Thermal Fluctuations in Actomyosin Stable States Increases the Predicted Force per Motor and Macroscopic Efficiency in Muscle Modelling
Q112757009	Inclusion of maintenance energy improves the intracellular flux predictions of CHO
Q29999986	Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data
Q91917881	Incomplete information about the partner affects the development of collaborative strategies in joint action
Q30424103	Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance
Q113309171	Incorporating metadata in HIV transmission network reconstruction: A machine learning feasibility assessment
Q47126278	Incorporating networks in a probabilistic graphical model to find drivers for complex human diseases.
Q112647013	Incorporating regulatory interactions into gene-set analyses for GWAS data: A controlled analysis with the MAGMA tool
Q35764718	Increased Aggregation Is More Frequently Associated to Human Disease-Associated Mutations Than to Neutral Polymorphisms
Q52677071	Increased T cell trafficking as adjunct therapy for HIV-1.
Q33349436	Increased brain signal variability accompanies lower behavioral variability in development
Q100391665	Increased comparability between RNA-Seq and microarray data by utilization of gene sets
Q36344735	Increased decision thresholds enhance information gathering performance in juvenile Obsessive-Compulsive Disorder (OCD).
Q27332176	Increased vulnerability of human ventricle to re-entrant excitation in hERG-linked variant 1 short QT syndrome
Q64114735	Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions
Q92471939	Increasing growth rate slows adaptation when genotypes compete for diffusing resources
Q112680198	Increasing neural network robustness improves match to macaque V1 eigenspectrum, spatial frequency preference and predictivity
Q113308433	Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology
Q113309514	Increasing the Power to Detect Causal Associations among Genes and between Genes and Complex Traits by Combining Genotypic and Gene Expression Data in Segregating Populations
Q31109293	Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations
Q92966916	Incremental data integration for tracking genotype-disease associations
Q33769124	Incremental mutual information: a new method for characterizing the strength and dynamics of connections in neuronal circuits
Q33565406	Independent component analysis in spiking neurons
Q38699991	Independent regulation of gene expression level and noise by histone modifications
Q64121185	Independent working memory resources for egocentric and allocentric spatial information
Q33987364	Indirect reciprocity under incomplete observation
Q36202452	Individual Differences in Dynamic Functional Brain Connectivity across the Human Lifespan
Q113308818	Individual risk perception and empirical social structures shape the dynamics of infectious disease outbreaks
Q27330139	Individual rules for trail pattern formation in Argentine ants (Linepithema humile)
Q46047108	Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
Q113308456	Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence
Q58697384	Individualised aspiration dynamics: Calculation by proofs
Q33349993	Individualization as driving force of clustering phenomena in humans
Q89892612	Individualized genetic network analysis reveals new therapeutic vulnerabilities in 6,700 cancer genomes
Q36188462	Induced Fit in Protein Multimerization: The HFBI Case
Q27334712	Induced effects of sodium ions on dopaminergic G-protein coupled receptors
Q113308542	Induced fit with replica exchange improves protein complex structure prediction
Q28538654	Induction of Wnt-inducible signaling protein-1 correlates with invasive breast cancer oncogenesis and reduced type 1 cell-mediated cytotoxic immunity: a retrospective study
Q33582207	Inductive game theory and the dynamics of animal conflict
Q33747473	Infectious disease modeling of social contagion in networks.
Q41929983	Infectious reactivation of cytomegalovirus explaining age- and sex-specific patterns of seroprevalence
Q113308514	Inference and dynamic simulation of malaria using a simple climate-driven entomological model of malaria transmission
Q28552862	Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion
Q34013571	Inference for nonlinear epidemiological models using genealogies and time series
Q30000085	Inference of Ancestral Recombination Graphs through Topological Data Analysis
Q113309624	Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis
Q36230487	Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.
Q28553341	Inference of Gene Regulatory Network Based on Local Bayesian Networks
Q30384334	Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome
Q34711751	Inference of R(0) and transmission heterogeneity from the size distribution of stuttering chains
Q30821202	Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data
Q36248721	Inference of Transmission Network Structure from HIV Phylogenetic Trees
Q90592437	Inference of coevolutionary dynamics and parameters from host and parasite polymorphism data of repeated experiments
Q33247449	Inference of disease-related molecular logic from systems-based microarray analysis
Q35398422	Inference of epidemiological dynamics based on simulated phylogenies using birth-death and coalescent models
Q34743724	Inference of gene regulatory networks with sparse structural equation models exploiting genetic perturbations
Q34244882	Inference of genotype-phenotype relationships in the antigenic evolution of human influenza A (H3N2) viruses.
Q103744236	Inference of mutability landscapes of tumors from single cell sequencing data
Q28473456	Inference of protein complex activities from chemical-genetic profile and its applications: predicting drug-target pathways
Q28543024	Inference of quantitative models of bacterial promoters from time-series reporter gene data
Q113308767	Inference of trajectory presence by tree dimension and subset specificity by subtree cover
Q94479575	Inference on dengue epidemics with Bayesian regime switching models
Q28564076	Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data
Q112286178	Inferred expression regulator activities suggest genes mediating cardiometabolic genetic signals
Q31149548	Inferring Aggregated Functional Traits from Metagenomic Data Using Constrained Non-negative Matrix Factorization: Application to Fiber Degradation in the Human Gut Microbiota
Q36015520	Inferring Contacting Residues within and between Proteins: What Do the Probabilities Mean?
Q31044284	Inferring Growth Control Mechanisms in Growing Multi-cellular Spheroids of NSCLC Cells from Spatial-Temporal Image Data
Q113309637	Inferring Loss-of-Heterozygosity from Tumors Without Paired Normals Using High-Density SNP Arrays
Q31047829	Inferring Neuronal Dynamics from Calcium Imaging Data Using Biophysical Models and Bayesian Inference
Q56991382	Inferring Non-Coding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering
Q26801539	Inferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability Models
Q113308733	Inferring RNA-binding protein target preferences using adversarial domain adaptation
Q31111565	Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data
Q89759268	Inferring TF activation order in time series scRNA-Seq studies
Q100381357	Inferring a complete genotype-phenotype map from a small number of measured phenotypes
Q103744249	Inferring a network from dynamical signals at its nodes
Q94468358	Inferring a simple mechanism for alpha-blocking by fitting a neural population model to EEG spectra
Q113308661	Inferring age-specific differences in susceptibility to and infectiousness upon SARS-CoV-2 infection based on Belgian social contact data
Q28472054	Inferring binding energies from selected binding sites
Q48042673	Inferring cell state by quantitative motility analysis reveals a dynamic state system and broken detailed balance.
Q21145293	Inferring clonal composition from multiple sections of a breast cancer
Q30571637	Inferring correlation networks from genomic survey data
Q58699805	Inferring decoding strategies for multiple correlated neural populations
Q28536897	Inferring developmental stage composition from gene expression in human malaria
Q28481774	Inferring dynamic signatures of microbes in complex host ecosystems
Q34192802	Inferring epidemic contact structure from phylogenetic trees
Q36298229	Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study
Q28675309	Inferring evolutionary histories of pathway regulation from transcriptional profiling data
Q101126487	Inferring evolutionary pathways and directed genotype networks of foodborne pathogens
Q33295214	Inferring function using patterns of native disorder in proteins
Q113309471	Inferring function using patterns of native disorder in proteins
Q58711883	Inferring hidden structure in multilayered neural circuits
Q21045419	Inferring horizontal gene transfer
Q35175782	Inferring host gene subnetworks involved in viral replication
Q24816485	Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family
Q59809275	Inferring interaction partners from protein sequences using mutual information
Q21563517	Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays
Q28488605	Inferring metabolic states in uncharacterized environments using gene-expression measurements
Q36345796	Inferring modulators of genetic interactions with epistatic nested effects models
Q64101016	Inferring neural circuit structure from datasets of heterogeneous tuning curves
Q21563506	Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
Q34845299	Inferring nonlinear neuronal computation based on physiologically plausible inputs
Q27321128	Inferring on the intentions of others by hierarchical Bayesian learning
Q113308638	Inferring ongoing cancer evolution from single tumour biopsies using synthetic supervised learning
Q42679851	Inferring oscillatory modulation in neural spike trains
Q33383213	Inferring pathway activity toward precise disease classification
Q64096894	Inferring rates of metastatic dissemination using stochastic network models
Q91757055	Inferring reaction network structure from single-cell, multiplex data, using toric systems theory
Q27318756	Inferring regulatory networks from experimental morphological phenotypes: a computational method reverse-engineers planarian regeneration
Q36406261	Inferring repeat-protein energetics from evolutionary information.
Q33432709	Inferring stabilizing mutations from protein phylogenies: application to influenza hemagglutinin
Q39004094	Inferring the Chemotactic Strategy of P. putida and E. coli Using Modified Kramers-Moyal Coefficients
Q35841923	Inferring the Clonal Structure of Viral Populations from Time Series Sequencing
Q35855747	Inferring the Forces Controlling Metaphase Kinetochore Oscillations by Reverse Engineering System Dynamics
Q98471491	Inferring the ancestry of parents and grandparents from genetic data
Q113308479	Inferring the effective reproductive number from deterministic and semi-deterministic compartmental models using incidence and mobility data
Q94457595	Inferring the immune response from repertoire sequencing
Q28537788	Inferring the source of transmission with phylogenetic data
Q30000836	Inferring the structure of social contacts from demographic data in the analysis of infectious diseases spread
Q98939102	Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention
Q100508783	Inferring tumor progression in large datasets
Q114054786	Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling
Q34504820	Inferring viral dynamics in chronically HCV infected patients from the spatial distribution of infected hepatocytes
Q33869016	Inferring visuomotor priors for sensorimotor learning
Q24813232	Inflammatory aetiology of human myometrial activation tested using directed graphs
Q27318231	Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and Trees
Q27315870	Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters
Q113308574	Influence of confinement on the spreading of bacterial populations
Q33587462	Influence of low-level stimulus features, task dependent factors, and spatial biases on overt visual attention
Q30380392	Influence of sequence changes and environment on intrinsically disordered proteins.
Q34211455	Influence of the fibroblastic reticular network on cell-cell interactions in lymphoid organs
Q31155762	Influence of wiring cost on the large-scale architecture of human cortical connectivity.
Q30488189	Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud
Q27026249	Information and efficiency in the nervous system--a synthesis
Q28475566	Information flow analysis of interactome networks
Q94468298	Information integration and collective motility in phototactic cyanobacteria
Q64261429	Information integration in large brain networks
Q34102668	Information routing driven by background chatter in a signaling network
Q98471499	Information transmission from NFkB signaling dynamics to gene expression
Q91828749	Information-theoretic analysis of multivariate single-cell signaling responses
Q89498633	Information-theoretic analysis of realistic odor plumes: What cues are useful for determining location?
Q57157704	Informational structures: A dynamical system approach for integrated information
Q33842121	Informed switching strongly decreases the prevalence of antibiotic resistance in hospital wards
Q33742080	Informing optimal environmental influenza interventions: how the host, agent, and environment alter dominant routes of transmission
Q33727977	Inherent high correlation of individual motility enhances population dispersal in a heterotrophic, planktonic protist
Q41090628	Inherent limitations of probabilistic models for protein-DNA binding specificity
Q64235561	Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures
Q35966252	Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons
Q112760898	Inhibitory neurons exhibit high controlling ability in the cortical microconnectome
Q27315935	Inhomogeneity Based Characterization of Distribution Patterns on the Plasma Membrane
Q47098052	Initial-state-dependent, robust, transient neural dynamics encode conscious visual perception.
Q35748822	Innate Immunity and the Inter-exposure Interval Determine the Dynamics of Secondary Influenza Virus Infection and Explain Observed Viral Hierarchies
Q33356596	Innate visual learning through spontaneous activity patterns
Q35101725	Input-dependent frequency modulation of cortical gamma oscillations shapes spatial synchronization and enables phase coding
Q36269573	Insect Bio-inspired Neural Network Provides New Evidence on How Simple Feature Detectors Can Enable Complex Visual Generalization and Stimulus Location Invariance in the Miniature Brain of Honeybees
Q28534839	Insertion of the Ca²⁺-independent phospholipase A₂ into a phospholipid bilayer via coarse-grained and atomistic molecular dynamics simulations
Q47130884	Insight into glucocorticoid receptor signalling through interactome model analysis.
Q113309559	Insight into the Structure of Amyloid Fibrils from the Analysis of Globular Proteins
Q94468314	Insight into the protein solubility driving forces with neural attention
Q33266804	Insight into the structure of amyloid fibrils from the analysis of globular proteins
Q113309682	Insights Into Domain Movement in Pseudomonas aeruginosa Lipase: Evidence of a Double-Lid Movement from Molecular Dynamics SImulations
Q91986521	Insights into adenosine A2A receptor activation through cooperative modulation of agonist and allosteric lipid interactions
Q33367135	Insights into protein-DNA interactions through structure network analysis
Q113309323	Insights into substrate recognition and specificity for IgG by Endoglycosidase S2
Q113309603	Insights into the coupling of duplication events and macroevolution from an age distribution of animal transmembrane gene families
Q28768161	Insights into the coupling of duplication events and macroevolution from an age profile of animal transmembrane gene families
Q113309343	Insights into the dynamic trajectories of protein filament division revealed by numerical investigation into the mathematical model of pure fragmentation
Q33717028	Insights into the evolution and emergence of a novel infectious disease
Q30155311	Insights into the fold organization of TIM barrel from interaction energy based structure networks
Q104059308	Insights on cross-species transmission of SARS-CoV-2 from structural modeling
Q60307777	Insights on the impact of mitochondrial organisation on bioenergetics in high-resolution computational models of cardiac cell architecture
Q55252296	Instance-based generalization for human judgments about uncertainty.
Q33697620	Instantaneous non-linear processing by pulse-coupled threshold units
Q113309622	Integrated Assessment and Prediction of Transcription Factor Binding
Q113309600	Integrated Computational Modeling of Oxygen Transport and Cellular Energetics Explains Observations on In Vivo Cardiac Oxygen Consumption and Energy Metabolites
Q113309508	Integrated Mechanisms of Anticipation and Rate-of-Change Computations in Cortical Circuits
Q28551193	Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis
Q35644507	Integrated Stochastic Model of DNA Damage Repair by Non-homologous End Joining and p53/p21-Mediated Early Senescence Signalling
Q33247445	Integrated assessment and prediction of transcription factor binding
Q33466747	Integrated assessment of genomic correlates of protein evolutionary rate
Q64086483	Integrated computational and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network
Q113308758	Integrated computational and in vivo models reveal Key Insights into macrophage behavior during bone healing
Q21563500	Integrated information in discrete dynamical systems: motivation and theoretical framework
Q27332292	Integrated information increases with fitness in the evolution of animats
Q33284528	Integrated mechanisms of anticipation and rate-of-change computations in cortical circuits
Q35022270	Integrated module and gene-specific regulatory inference implicates upstream signaling networks
Q64114653	Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models
Q28538773	Integrated text mining and chemoinformatics analysis associates diet to health benefit at molecular level
Q113308504	Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues
Q28551361	Integrating Antimicrobial Therapy with Host Immunity to Fight Drug-Resistant Infections: Classical vs. Adaptive Treatment
Q92749888	Integrating Hi-C links with assembly graphs for chromosome-scale assembly
Q31114011	Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens
Q35952111	Integrating Transgenic Vector Manipulation with Clinical Interventions to Manage Vector-Borne Diseases
Q112614190	Integrating across neuroimaging modalities boosts prediction accuracy of cognitive ability
Q34118984	Integrating bioinformatics tools to handle glycosylation
Q28484829	Integrating cellular metabolism into a multiscale whole-body model
Q111150152	Integrating deep learning with microfluidics for biophysical classification of sickle red blood cells adhered to laminin
Q35195359	Integrating diverse datasets improves developmental enhancer prediction
Q33515881	Integrating extrinsic and intrinsic cues into a minimal model of lineage commitment for hematopoietic progenitors
Q34154452	Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1.
Q35196586	Integrating interactive computational modeling in biology curricula
Q49924966	Integrating linear optimization with structural modeling to increase HIV neutralization breadth.
Q34574797	Integrating phylodynamics and epidemiology to estimate transmission diversity in viral epidemics
Q34025895	Integrating quantitative knowledge into a qualitative gene regulatory network
Q33480954	Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants
Q28476433	Integrating signals from the T-cell receptor and the interleukin-2 receptor
Q28475578	Integrating statistical predictions and experimental verifications for enhancing protein-chemical interaction predictions in virtual screening
Q112585956	Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases
Q113309251	Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations
Q93099170	Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction
Q30000090	Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis
Q58780272	Integration and multiplexing of positional and contextual information by the hippocampal network
Q35671716	Integration of Metabolic and Quorum Sensing Signals Governing the Decision to Cooperate in a Bacterial Social Trait
Q113309318	Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism
Q30381269	Integration of evolutionary features for the identification of functionally important residues in major facilitator superfamily transporters
Q33281287	Integration of genome and chromatin structure with gene expression profiles to predict c-MYC recognition site binding and function
Q47224195	Integration of pan-cancer transcriptomics with RPPA proteomics reveals mechanisms of epithelial-mesenchymal transition.
Q64091687	Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
Q99211804	Integration of social cues and individual experiences during instrumental avoidance learning
Q34550700	Integration of the transcriptome and glycome for identification of glycan cell signatures
Q113309109	Integration, coincidence detection and resonance in networks of spiking neurons expressing Gamma oscillations and asynchronous states
Q35814729	Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response
Q35122964	Integrative analysis of circadian transcriptome and metabolic network reveals the role of de novo purine synthesis in circadian control of cell cycle
Q30652671	Integrative analysis of deep sequencing data identifies estrogen receptor early response genes and links ATAD3B to poor survival in breast cancer
Q33940698	Integrative analysis of many weighted co-expression networks using tensor computation
Q102330783	Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions
Q28744435	Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis
Q34625338	Integrative analysis using module-guided random forests reveals correlated genetic factors related to mouse weight
Q34299339	Integrative approach to pain genetics identifies pain sensitivity loci across diseases
Q35126269	Integrative computational and experimental approaches to establish a post-myocardial infarction knowledge map.
Q33813499	Integrative features of the yeast phosphoproteome and protein-protein interaction map
Q92718207	Integrative modeling of the HIV-1 ribonucleoprotein complex
Q28534949	Integrative modelling of the influence of MAPK network on cancer cell fate decision
Q35560646	Integrative multi-omics module network inference with Lemon-Tree
Q52644985	Integrative single-cell omics analyses reveal epigenetic heterogeneity in mouse embryonic stem cells.
Q28472161	Integrin clustering is driven by mechanical resistance from the glycocalyx and the substrate
Q27333190	Inter-domain communication mechanisms in an ABC importer: a molecular dynamics study of the MalFGK2E complex
Q58762130	Inter-nucleosomal communication between histone modifications for nucleosome phasing
Q113308631	Inter-paralog amino acid inversion events in large phylogenies of duplicated proteins
Q113309177	Inter-trial effects in priming of pop-out: Comparison of computational updating models
Q90611783	Inter-trial effects in visual pop-out search: Factorial comparison of Bayesian updating models
Q64994396	Interacting cells driving the evolution of multicellular life cycles.
Q27324370	Interaction of motility, directional sensing, and polarity modules recreates the behaviors of chemotaxing cells
Q28546494	Interaction of the antimicrobial peptide polymyxin B1 with both membranes of E. coli: a molecular dynamics study
Q56333675	Interaction of the human erythrocyte Band 3 anion exchanger 1 (AE1, SLC4A1) with lipids and glycophorin A: Molecular organization of the Wright (Wr) blood group antigen
Q114054829	Interactions between all pairs of neighboring trees in 16 forests worldwide reveal details of unique ecological processes in each forest, and provide windows into their evolutionary histories
Q97555216	Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator
Q27335237	Interactions between connected half-sarcomeres produce emergent mechanical behavior in a mathematical model of muscle
Q113308639	Interactions between sensory prediction error and task error during implicit motor learning
Q47862341	Interactions between species introduce spurious associations in microbiome studies.
Q42366134	Interactions between the tumor and the blood systemic response of breast cancer patients.
Q52598816	Interactions of spatial strategies producing generalization gradient and blocking: A computational approach.
Q91223078	Interactive implementations of thermodynamics-based RNA structure and RNA-RNA interaction prediction approaches for example-driven teaching
Q57181983	Interactive reservoir computing for chunking information streams
Q36106534	Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes
Q27327188	Interconnected cavernous structure of bacterial fruiting bodies
Q28479010	Interconversion of functional motions between mesophilic and thermophilic adenylate kinases
Q30152884	Interdomain Contacts Control Native State Switching of RfaH on a Dual-Funneled Landscape
Q28488156	Interface-resolved network of protein-protein interactions
Q28660740	Interference and shaping in sensorimotor adaptations with rewards
Q89527088	Interference with HIV infection of the first cell is essential for viral clearance at sub-optimal levels of drug inhibition
Q33628731	Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq
Q92205027	Interkinetic nuclear movements promote apical expansion in pseudostratified epithelia at the expense of apicobasal elongation
Q27331284	Intermittent motion in desert locusts: behavioural complexity in simple environments
Q57465513	Internal but not external noise frees working memory resources
Q34499299	Internal representations of temporal statistics and feedback calibrate motor-sensory interval timing
Q113308914	Internal state effects on behavioral shifts in freely behaving praying mantises (Tenodera sinensis)
Q21563473	International Society for Computational Biology Honors Dana Pe'er with Top Bioinformatics/Computational Biology Award for 2014
Q21145304	International Society for Computational Biology Honors David Eisenberg with 2013 Accomplishment by a Senior Scientist Award
Q21092518	International Society for Computational Biology Honors Michael Ashburner and Olga Troyanskaya with Top Bioinformatics/Computational Biology Awards for 2011
Q21145313	International Society for Computational Biology Honours Gunnar von Heijne and Ziv Bar-Joseph with Top Bioinformatics/Computational Biology Awards for 2012
Q34367558	International Society for Computational Biology welcomes its newest class of fellows
Q36043611	Interplay between Graph Topology and Correlations of Third Order in Spiking Neuronal Networks
Q33811809	Interplay between chaperones and protein disorder promotes the evolution of protein networks
Q35596545	Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models
Q113309183	Interplay between mobility, multi-seeding and lockdowns shapes COVID-19 local impact
Q33543179	Interplay between pleiotropy and secondary selection determines rise and fall of mutators in stress response
Q34372262	Interplay between the localization and kinetics of phosphorylation in flagellar pole development of the bacterium Caulobacter crescentus
Q34407774	Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization.
Q35160333	Interplay of intrinsic and synaptic conductances in the generation of high-frequency oscillations in interneuronal networks with irregular spiking
Q58780478	Interplay of multiple pathways and activity-dependent rules in STDP
Q113308830	Interpretable machine learning for high-dimensional trajectories of aging health
Q113308468	Interpretable pairwise distillations for generative protein sequence models
Q48097234	Interpretation of correlated neural variability from models of feed-forward and recurrent circuits.
Q34625256	Interpretation of genomic variants using a unified biological network approach
Q28475985	Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production
Q33535872	Interpreting metabolomic profiles using unbiased pathway models
Q92439437	Interpreting neural decoding models using grouped model reliance
Q28553213	Interrogating Emergent Transport Properties for Molecular Motor Ensembles: A Semi-analytical Approach
Q33500130	Interrogating and predicting tolerated sequence diversity in protein folds: application to E. elaterium trypsin inhibitor-II cystine-knot miniprotein
Q36329954	Interrogating the topological robustness of gene regulatory circuits by randomization.
Q28479016	Interrogation of the protein-protein interactions between human BRCA2 BRC repeats and RAD51 reveals atomistic determinants of affinity
Q48235366	Interrupting behaviour: Minimizing decision costs via temporal commitment and low-level interrupts
Q112297784	Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells
Q34071347	Interspecies translation of disease networks increases robustness and predictive accuracy.
Q113309224	Interspike interval correlations in neuron models with adaptation and correlated noise
Q101406959	Interspike intervals within retinal spike bursts combinatorially encode multiple stimulus features
Q35203271	Intra-tumour signalling entropy determines clinical outcome in breast and lung cancer
Q35817151	Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features
Q21563507	Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants
Q33358663	Intramolecular cohesion of coils mediated by phenylalanine--glycine motifs in the natively unfolded domain of a nucleoporin
Q113309594	Intricate Knots in Proteins: Function and Evolution
Q21145675	Intricate knots in proteins: Function and evolution
Q113308920	Intriguing effects of selection intensity on the evolution of prosocial behaviors
Q113309604	Intrinsic Disorder is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes
Q28552898	Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches
Q36077774	Intrinsic Valuation of Information in Decision Making under Uncertainty.
Q33417626	Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis
Q34388431	Intrinsic disorder in the human spliceosomal proteome
Q33252616	Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
Q33352687	Intrinsic gain modulation and adaptive neural coding
Q35490195	Intrinsic neuronal properties switch the mode of information transmission in networks
Q27323298	Intrinsic noise induces critical behavior in leaky Markovian networks leading to avalanching
Q33747510	Intrinsic stability of temporally shifted spike-timing dependent plasticity
Q33514873	Intrinsic structural disorder confers cellular viability on oncogenic fusion proteins
Q33325882	Intrinsically disordered proteins display no preference for chaperone binding in vivo
Q33640094	Intrinsically disordered regions may lower the hydration free energy in proteins: a case study of nudix hydrolase in the bacterium Deinococcus radiodurans
Q36355090	Intrinsically-generated fluctuating activity in excitatory-inhibitory networks.
Q28469269	Introduction to computational proteomics
Q28749568	Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening
Q34539640	Introduction to translational bioinformatics collection
Q113309611	Intronic Alternative Splicing Regulators Identified By Comparative Genomics in Nematodes
Q27339694	Intronic alternative splicing regulators identified by comparative genomics in nematodes
Q100732633	Intuitive physical reasoning about objects' masses transfers to a visuomotor decision task consistent with Newtonian physics
Q42578869	Invariant distribution of promoter activities in Escherichia coli
Q90305538	Invariant neural responses for sensory categories revealed by the time-varying information for communication calls
Q47289174	Invariant recognition drives neural representations of action sequences
Q59810724	Invasion and effective size of graph-structured populations
Q34537878	Inverse Stochastic Resonance in Cerebellar Purkinje Cells
Q113308444	Inverse folding based pre-training for the reliable identification of intrinsic transcription terminators
Q41106355	Inverse stochastic resonance in networks of spiking neurons
Q50421395	Inverse tissue mechanics of cell monolayer expansion.
Q34055197	Inversion of the balance between hydrophobic and hydrogen bonding interactions in protein folding and aggregation
Q27335416	Investigating CTL mediated killing with a 3D cellular automaton
Q114054779	Investigating differential abundance methods in microbiome data: A benchmark study
Q33548795	Investigating homology between proteins using energetic profiles
Q113308671	Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model
Q113308415	Investigating microscale patchiness of motile microbes under turbulence in a simulated convective mixed layer
Q35909939	Investigating the Consequences of Interference between Multiple CD8+ T Cell Escape Mutations in Early HIV Infection
Q33478386	Investigating the conformational stability of prion strains through a kinetic replication model
Q64101021	Investigating the deregulation of metabolic tasks via Minimum Network Enrichment Analysis (MiNEA) as applied to nonalcoholic fatty liver disease using mouse and human omics data
Q113308519	Investigating the structural changes due to adenosine methylation of the Kaposi’s sarcoma-associated herpes virus ORF50 transcript
Q27320874	Investigating the structure and dynamics of the PIK3CA wild-type and H1047R oncogenic mutant
Q35133364	Investigation of inflammation and tissue patterning in the gut using a Spatially Explicit General-purpose Model of Enteric Tissue (SEGMEnT).
Q33513956	Investigation of the interaction between the large and small subunits of potato ADP-glucose pyrophosphorylase
Q33329084	Investigations of oligonucleotide usage variance within and between prokaryotes
Q33565386	Ion channel density regulates switches between regular and fast spiking in soma but not in axons
Q91596308	Ion channel noise shapes the electrical activity of endocrine cells
Q28547123	Irradiation of Neurons with High-Energy Charged Particles: An In Silico Modeling Approach
Q58805996	Irrelevance by inhibition: Learning, computation, and implications for schizophrenia
Q35667401	Is Model Fitting Necessary for Model-Based fMRI?
Q97093209	Is mammography screening beneficial: An individual-based stochastic model for breast cancer incidence and mortality
Q33809355	Is my network module preserved and reproducible?
Q33700691	Is protein folding sub-diffusive?
Q36248717	Is the Conformational Ensemble of Alzheimer's Aβ10-40 Peptide Force Field Dependent?
Q28552164	Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering
Q64099391	Isolating and quantifying the role of developmental noise in generating phenotypic variation
Q27336498	Isolation-by-distance and outbreeding depression are sufficient to drive parapatric speciation in the absence of environmental influences
Q113308765	Isotope-assisted metabolic flux analysis as an equality-constrained nonlinear program for improved scalability and robustness
Q96770614	It's about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology
Q113309633	Iterative Reconstruction of Transcriptional Regulatory Networks: an Algorithmic Approach
Q101239995	Iterative point set registration for aligning scRNA-seq data
Q28469211	Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach
Q36264946	Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies
Q98562679	JBrowse Connect: A server API to connect JBrowse instances and users
Q34167839	Joint analysis of multiple metagenomic samples
Q34116827	Joint ancestry and association testing in admixed individuals
Q28474493	Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling
Q34126236	Joint modelling of confounding factors and prominent genetic regulators provides increased accuracy in genetical genomics studies
Q31035962	Josephin Domain Structural Conformations Explored by Metadynamics in Essential Coordinates
Q36380048	Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers.
Q35884040	K+ Block Is the Mechanism of Functional Asymmetry in Bacterial Na(v) Channels
Q34383484	Keeping up with the Joneses: interpersonal prediction errors and the correlation of behavior in a tandem sequential choice task
Q35909473	Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System
Q90694100	Key residues in TLR4-MD2 tetramer formation identified by free energy simulations
Q27339751	Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method
Q113309613	Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method
Q28548681	Keys to Lipid Selection in Fatty Acid Amide Hydrolase Catalysis: Structural Flexibility, Gating Residues and Multiple Binding Pockets
Q96432128	Kilohertz waveforms optimized to produce closed-state Na+ channel inactivation eliminate onset response in nerve conduction block
Q108126704	KinPred: A unified and sustainable approach for harnessing proteome-level human kinase-substrate predictions
Q28554490	Kinase Inhibition Leads to Hormesis in a Dual Phosphorylation-Dephosphorylation Cycle
Q32186144	Kinetic Modeling of ABCG2 Transporter Heterogeneity: A Quantitative, Single-Cell Analysis of the Side Population Assay
Q61810620	Kinetic and thermodynamic insights into sodium ion translocation through the μ-opioid receptor from molecular dynamics and machine learning analysis
Q35224716	Kinetic memory based on the enzyme-limited competition
Q99411797	Kinetic modeling of H2O2 dynamics in the mitochondria of HeLa cells
Q28473030	Kinetic modeling of the assembly, dynamic steady state, and contraction of the FtsZ ring in prokaryotic cytokinesis
Q34130178	Kinetic rate constant prediction supports the conformational selection mechanism of protein binding
Q35223752	Kinetically-defined component actions in gene repression
Q34499321	Kinetics of amyloid aggregation: a study of the GNNQQNY prion sequence
Q28476555	Kinetics of rhodopsin deactivation and its role in regulating recovery and reproducibility of rod photoresponse
Q33525504	Knots: attractive places with high path tortuosity in mouse open field exploration
Q33649772	Knotted vs. unknotted proteins: evidence of knot-promoting loops
Q30985759	Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data
Q28538204	Knowledge-based fragment binding prediction
Q113308792	Known allosteric proteins have central roles in genetic disease
Q50419820	LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions.
Q90847661	LASSI: A lattice model for simulating phase transitions of multivalent proteins
Q33884554	LASSIM-A network inference toolbox for genome-wide mechanistic modeling
Q93179026	LMSM: A modular approach for identifying lncRNA related miRNA sponge modules in breast cancer
Q64114766	LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities
Q90375389	LOTUS: A single- and multitask machine learning algorithm for the prediction of cancer driver genes
Q47238496	LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction
Q34064172	LTS and FS inhibitory interneurons, short-term synaptic plasticity, and cortical circuit dynamics
Q113308516	LaDIVA: A neurocomputational model providing laryngeal motor control for speech acquisition and production
Q113309228	Label-free imaging and classification of live P. falciparum enables high performance parasitemia quantification without fixation or staining
Q92488194	Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism
Q36224656	Lack of Ecological and Life History Context Can Create the Illusion of Social Interactions in Dictyostelium discoideum
Q35817125	Laminar Neural Field Model of Laterally Propagating Waves of Orientation Selectivity
Q35547930	Laminar and dorsoventral molecular organization of the medial entorhinal cortex revealed by large-scale anatomical analysis of gene expression.
Q38702388	Landscape and variation of novel retroduplications in 26 human populations.
Q31134521	Landscape as a model: the importance of geometry.
Q34126231	Landscape epidemiology and control of pathogens with cryptic and long-distance dispersal: sudden oak death in northern Californian forests
Q125476385	Landscape quantifies the intermediate state and transition dynamics in ecological networks
Q36050570	Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
Q113309548	Large Scale Discovery of Promoter Motifs in Drosophila melanogaster
Q92043397	Large benefits to youth-focused HIV treatment-as-prevention efforts in generalized heterosexual populations: An agent-based simulation model
Q95285009	Large scale analyses of genotype-phenotype relationships of glycine decarboxylase mutations and neurological disease severity
Q24288783	Large scale characterization of the LC13 TCR and HLA-B8 structural landscape in reaction to 172 altered peptide ligands: a molecular dynamics simulation study
Q113308660	Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins
Q91886037	Large vessels as a tree of transmission lines incorporated in the CircAdapt whole-heart model: A computational tool to examine heart-vessel interaction
Q28547971	Large-Scale Conformational Transitions and Dimerization Are Encoded in the Amino-Acid Sequences of Hsp70 Chaperones
Q28554586	Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing
Q28474801	Large-scale analysis of network bistability for human cancers
Q28545239	Large-scale chemical similarity networks for target profiling of compounds identified in cell-based chemical screens
Q27332426	Large-scale conformational changes of Trypanosoma cruzi proline racemase predicted by accelerated molecular dynamics simulation
Q91296023	Large-scale cortical travelling waves predict localized future cortical signals
Q33269792	Large-scale discovery of promoter motifs in Drosophila melanogaster
Q35195382	Large-scale genomic analysis suggests a neutral punctuated dynamics of transposable elements in bacterial genomes.
Q113309387	Large-scale simulations of biological cell sorting driven by differential adhesion follow diffusion-limited domain coalescence regime
Q21145689	Large-scale trends in the evolution of gene structures within 11 animal genomes
Q33260343	Large-scale turnover of functional transcription factor binding sites in Drosophila
Q113309587	Large-scale turnover of functional transcription factor binding sites in Drosophila
Q90561582	Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations
Q104791328	Lassa viral dynamics in non-human primates treated with favipiravir or ribavirin
Q113309368	Latching dynamics as a basis for short-term recall
Q55312041	Latent environment allocation of microbial community data.
Q33687060	Latent factor analysis to discover pathway-associated putative segmental aneuploidies in human cancers
Q64109132	Latent goal models for dynamic strategic interaction
Q34632827	Lattice-based model of ductal carcinoma in situ suggests rules for breast cancer progression to an invasive state
Q27323199	Leadership and path characteristics during walks are linked to dominance order and individual traits in dogs
Q27322791	Leadership in moving human groups
Q37288244	Leading a statistical bioinformatics lab: it's all about finding balance. Interview with Olga Vitek
Q33685444	Learn from the best
Q33573550	Learning "graph-mer" motifs that predict gene expression trajectories in development
Q30385312	Learning Pitch with STDP: A Computational Model of Place and Temporal Pitch Perception Using Spiking Neural Networks.
Q34539287	Learning Reward Uncertainty in the Basal Ganglia
Q36053953	Learning Universal Computations with Spikes
Q33349451	Learning a weighted sequence model of the nucleosome core and linker yields more accurate predictions in Saccharomyces cerevisiae and Homo sapiens
Q36328314	Learning about and from others' prudence, impatience or laziness: The computational bases of attitude alignment
Q93179124	Learning action-oriented models through active inference
Q41349630	Learning and executing goal-directed choices by internally generated sequences in spiking neural circuits
Q64106288	Learning and forgetting using reinforced Bayesian change detection
Q34139899	Learning and generalization under ambiguity: an fMRI study
Q101154780	Learning and interpreting the gene regulatory grammar in a deep learning framework
Q113308843	Learning as filtering: Implications for spike-based plasticity
Q113309348	Learning brain dynamics for decoding and predicting individual differences
Q42696657	Learning causal networks with latent variables from multivariate information in genomic data
Q95284779	Learning clinical networks from medical records based on information estimates in mixed-type data
Q114924890	Learning compositional sequences with multiple time scales through a hierarchical network of spiking neurons
Q30448961	Learning contrast-invariant cancellation of redundant signals in neural systems
Q108127383	Learning divisive normalization in primary visual cortex
Q28552061	Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics
Q92518134	Learning from animals: How to Navigate Complex Terrains
Q33851547	Learning from sensory and reward prediction errors during motor adaptation
Q35105560	Learning gene networks under SNP perturbations using eQTL datasets
Q100953509	Learning gene networks underlying clinical phenotypes using SNP perturbation
Q42918176	Learning how to run a lab: interviews with principal investigators
Q46208249	Learning infectious disease epidemiology in a modern framework
Q34699674	Learning multisensory integration and coordinate transformation via density estimation
Q35846197	Learning of Chunking Sequences in Cognition and Behavior
Q92802003	Learning spatiotemporal signals using a recurrent spiking network that discretizes time
Q28546817	Learning the Structure of Biomedical Relationships from Unstructured Text
Q30473109	Learning the optimal control of coordinated eye and head movements
Q64091694	Learning the payoffs and costs of actions
Q112700624	Learning the rules of collective cell migration using deep attention networks
Q64233678	Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization
Q113308509	Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies
Q93147101	Learning the structure of the world: The adaptive nature of state-space and action representations in multi-stage decision-making
Q35833409	Learning to Estimate Dynamical State with Probabilistic Population Codes
Q31116138	Learning to Predict miRNA-mRNA Interactions from AGO CLIP Sequencing and CLASH Data
Q90356281	Learning to represent signals spike by spike
Q92726781	Learning to synchronize: How biological agents can couple neural task modules for dealing with the stability-plasticity dilemma
Q92984285	Learning to use past evidence in a sophisticated world model
Q93073876	Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting
Q34325489	Learning with slight forgetting optimizes sensorimotor transformation in redundant motor systems
Q33954316	Learning, memory, and the role of neural network architecture
Q112608144	Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network
Q46262266	Let's Make Those Book Chapters Open Too!.
Q36121811	Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection
Q112069384	Levels of SARS-CoV-2 population exposure are considerably higher than suggested by seroprevalence surveys
Q28553729	Leveraging Hypoxia-Activated Prodrugs to Prevent Drug Resistance in Solid Tumors
Q113308846	Leveraging a physiologically-based quantitative translational modeling platform for designing B cell maturation antigen-targeting bispecific T cell engagers for treatment of multiple myeloma
Q115020741	Leveraging eQTLs to identify individual-level tissue of interest for a complex trait
Q89655415	Leveraging effect size distributions to improve polygenic risk scores derived from summary statistics of genome-wide association studies
Q101154853	Leveraging functional annotation to identify genes associated with complex diseases
Q33825680	Leveraging functional annotations in genetic risk prediction for human complex diseases
Q92269646	Leveraging genetic interactions for adverse drug-drug interaction prediction
Q64090114	Leveraging heterogeneity for neural computation with fading memory in layer 2/3 cortical microcircuits
Q34769251	Leveraging prior information to detect causal variants via multi-variant regression
Q33728497	Library of disordered patterns in 3D protein structures.
Q49980878	Life cycle synchronization is a viral drug resistance mechanism.
Q34699648	Lifespan differences in hematopoietic stem cells are due to imperfect repair and unstable mean-reversion
Q113309490	Ligand Binding and Circular Permutation modify Residue Interaction Network in DHFR
Q28550085	Ligand Discovery for the Alanine-Serine-Cysteine Transporter (ASCT2, SLC1A5) from Homology Modeling and Virtual Screening
Q33287881	Ligand binding and circular permutation modify residue interaction network in DHFR.
Q28534062	Ligand clouds around protein clouds: a scenario of ligand binding with intrinsically disordered proteins
Q34244869	Ligand-dependent conformations and dynamics of the serotonin 5-HT(2A) receptor determine its activation and membrane-driven oligomerization properties
Q34055218	Ligand-induced modulation of the free-energy landscape of G protein-coupled receptors explored by adaptive biasing techniques
Q52371594	Ligand-induced perturbation of the HIF-2α:ARNT dimer dynamics.
Q28545126	Ligand-target prediction by structural network biology using nAnnoLyze
Q36165278	Likelihood-Based Inference of B Cell Clonal Families.
Q34350839	Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models
Q100508811	Likelihood-free nested sampling for parameter inference of biochemical reaction networks
Q41577826	Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb.
Q34998175	Limited agreement of independent RNAi screens for virus-required host genes owes more to false-negative than false-positive factors
Q42370251	Limited synapse overproduction can speed development but sometimes with long-term energy and discrimination penalties.
Q28540026	Limits of feedback control in bacterial chemotaxis
Q92729806	Limits on amplifiers of natural selection under death-Birth updating
Q55257220	Limits on reliable information flows through stochastic populations.
Q58718836	Lineage space and the propensity of bacterial cells to undergo growth transitions
Q34314862	Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks
Q35165190	Linear superposition and prediction of bacterial promoter activity dynamics in complex conditions
Q113308534	Linear viscoelastic properties of the vertex model for epithelial tissues
Q35084963	Linkage of viral sequences among HIV-infected village residents in Botswana: estimation of linkage rates in the presence of missing data
Q34456042	Linkers of cell polarity and cell cycle regulation in the fission yeast protein interaction network
Q27334632	Linking changes in epithelial morphogenesis to cancer mutations using computational modeling
Q35362244	Linking macroscopic with microscopic neuroanatomy using synthetic neuronal populations
Q33886154	Linking microscopic spatial patterns of tissue destruction in emphysema to macroscopic decline in stiffness using a 3D computational model
Q34350826	Linking myometrial physiology to intrauterine pressure; how tissue-level contractions create uterine contractions of labor
Q30588679	Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling
Q57061667	Linking signal detection theory and encoding models to reveal independent neural representations from neuroimaging data
Q38711942	Linking structure and activity in nonlinear spiking networks
Q35045380	Linking transcriptional changes over time in stimulated dendritic cells to identify gene networks activated during the innate immune response
Q35362110	Lipid clustering correlates with membrane curvature as revealed by molecular simulations of complex lipid bilayers
Q34130158	Lipid exchange mechanism of the cholesteryl ester transfer protein clarified by atomistic and coarse-grained simulations
Q28534072	Lipid receptor S1P₁ activation scheme concluded from microsecond all-atom molecular dynamics simulations
Q30421918	Lipid tail protrusion in simulations predicts fusogenic activity of influenza fusion peptide mutants and conformational models
Q35208080	LipidWrapper: an algorithm for generating large-scale membrane models of arbitrary geometry
Q57656679	Lipidated apolipoprotein E4 structure and its receptor binding mechanism determined by a combined cross-linking coupled to mass spectrometry and molecular dynamics approach
Q28482155	Literature based drug interaction prediction with clinical assessment using electronic medical records: novel myopathy associated drug interactions
Q28475561	Literature mining for the discovery of hidden connections between drugs, genes and diseases
Q30397317	Little Italy: an agent-based approach to the estimation of contact patterns- fitting predicted matrices to serological data
Q33529032	Live Coverage of Intelligent Systems for Molecular Biology/European Conference on computational biology (ISMB/ECCB) 2009
Q33529034	Live coverage of scientific conferences using web technologies
Q27320281	Live imaging-based model selection reveals periodic regulation of the stochastic G1/S phase transition in vertebrate axial development
Q34186939	Living on three time scales: the dynamics of plasma cell and antibody populations illustrated for hepatitis a virus
Q113308564	LncRNAs of Saccharomyces cerevisiae bypass the cell cycle arrest imposed by ethanol stress
Q28541592	Loads bias genetic and signaling switches in synthetic and natural systems
Q33750062	Lobe specific Ca2+-calmodulin nano-domain in neuronal spines: a single molecule level analysis
Q28551667	Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions
Q113308424	Local and collective transitions in sparsely-interacting ecological communities
Q60301261	Local epigenomic state cannot discriminate interacting and non-interacting enhancer-promoter pairs with high accuracy
Q108898663	Local field potentials in a pre-motor region predict learned vocal sequences
Q33349433	Local function conservation in sequence and structure space
Q33750118	Local gene regulation details a recognition code within the LacI transcriptional factor family
Q48342687	Local motion adaptation enhances the representation of spatial structure at EMD arrays.
Q31036439	Local orientation and the evolution of foraging: changes in decision making can eliminate evolutionary trade-offs
Q21563476	Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect
Q113265289	Localization, epidemic transitions, and unpredictability of multistrain epidemics with an underlying genotype network
Q36684546	Localized lipid packing of transmembrane domains impedes integrin clustering
Q91861108	Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data
Q21563481	Localizing genes to cerebellar layers by classifying ISH images
Q101044733	Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts
Q28540363	Locating the route of entry and binding sites of benzocaine and phenytoin in a bacterial voltage gated sodium channel
Q34311529	Location-dependent effects of inhibition on local spiking in pyramidal neuron dendrites
Q28729040	Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites
Q36399046	Locking of correlated neural activity to ongoing oscillations
Q60729849	Locus Coeruleus tracking of prediction errors optimises cognitive flexibility: An Active Inference model.
Q100939909	LocusFocus: Web-based colocalization for the annotation and functional follow-up of GWAS
Q26776488	Locust Collective Motion and Its Modeling
Q34390473	Locust dynamics: behavioral phase change and swarming
Q35224440	Logarithmic and power law input-output relations in sensory systems with fold-change detection
Q55361389	Logistical constraints lead to an intermediate optimum in outbreak response vaccination.
Q35126377	Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing
Q35885033	Long-Lasting Sparks: Multi-Metastability and Release Competition in the Calcium Release Unit Network
Q36170646	Long-Range Signaling in MutS and MSH Homologs via Switching of Dynamic Communication Pathways
Q113309659	Long-range Periodic Patterns in Microbial Genomes Indicate Significant Multi-scale Chromosomal Organization
Q89695497	Long-range correlation in protein dynamics: Confirmation by structural data and normal mode analysis
Q28477280	Long-range intra-protein communication can be transmitted by correlated side-chain fluctuations alone
Q27324571	Long-range order in canary song
Q25256794	Long-range periodic patterns in microbial genomes indicate significant multi-scale chromosomal organization.
Q90076582	Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccination
Q40109334	Long-time analytic approximation of large stochastic oscillators: Simulation, analysis and inference.
Q96770610	Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites
Q113308807	Longitudinally monitored immune biomarkers predict the timing of COVID-19 outcomes
Q33515271	Looking at cerebellar malformations through text-mined interactomes of mice and humans
Q90076509	Loop analysis of blood pressure/volume homeostasis
Q35465289	Loregic: a method to characterize the cooperative logic of regulatory factors
Q33838216	Loss of genetic redundancy in reductive genome evolution.
Q35399319	Low probability of initiating nirS transcription explains observed gas kinetics and growth of bacteria switching from aerobic respiration to denitrification
Q40995565	Low-dimensional spike rate models derived from networks of adaptive integrate-and-fire neurons: Comparison and implementation
Q92078003	Low-rate firing limit for neurons with axon, soma and dendrites driven by spatially distributed stochastic synapses
Q34042604	LsrR quorum sensing "switch" is revealed by a bottom-up approach
Q33654183	Lysine120 interactions with p53 response elements can allosterically direct p53 organization
Q28607721	Lévy Walks Suboptimal under Predation Risk
Q36135577	M-Track: A New Software for Automated Detection of Grooming Trajectories in Mice
Q33642719	MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.
Q91596431	MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
Q30935493	MAGMA: generalized gene-set analysis of GWAS data
Q47303417	MAGPIE: Simplifying access and execution of computational models in the life sciences
Q64114728	MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
Q108126729	MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics
Q34318190	MC EMiNEM maps the interaction landscape of the Mediator
Q31025538	MCAM: multiple clustering analysis methodology for deriving hypotheses and insights from high-throughput proteomic datasets
Q30826831	MD/DPD Multiscale Framework for Predicting Morphology and Stresses of Red Blood Cells in Health and Disease
Q27333596	MDCK cystogenesis driven by cell stabilization within computational analogues
Q58704945	MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction
Q27316439	MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks
Q31109557	MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
Q40995571	MFPred: Rapid and accurate prediction of protein-peptide recognition multispecificity using self-consistent mean field theory
Q113309302	MGEnrichment: A web application for microglia gene list enrichment analysis
Q93196269	MHC binding affects the dynamics of different T-cell receptors in different ways
Q27317076	MIiSR: Molecular Interactions in Super-Resolution Imaging Enables the Analysis of Protein Interactions, Dynamics and Formation of Multi-protein Structures
Q33807098	MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures
Q113309550	MODELING HER2 EFFECTS ON CELL BEHAVIOR FROM MASS SPECTROMETRY PHOSPHOTYROSINE DATA
Q30842672	MODMatcher: multi-omics data matcher for integrative genomic analysis
Q99546635	MONET: Multi-omic module discovery by omic selection
Q113309441	MORPH: Probabilistic alignment combined with hidden Markov models of cis-regulatory modules
Q30837902	MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules
Q34446620	MOSAIC: a multiscale model of osteogenesis and sprouting angiogenesis with lateral inhibition of endothelial cells
Q47215897	MPLasso: Inferring microbial association networks using prior microbial knowledge
Q35133200	MRFalign: protein homology detection through alignment of Markov random fields
Q48159072	MUMmer4: A fast and versatile genome alignment system
Q36072739	Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
Q98471506	Machine Learning based histology phenotyping to investigate the epidemiologic and genetic basis of adipocyte morphology and cardiometabolic traits
Q36188473	Machine Learning for Characterization of Insect Vector Feeding
Q91796642	Machine and deep learning meet genome-scale metabolic modeling
Q62977849	Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas
Q42734852	Machine learning and its applications to biology
Q112608252	Machine learning approach for automatic recognition of tomato-pollinating bees based on their buzzing-sounds
Q28545910	Machine learning assisted design of highly active peptides for drug discovery
Q101568586	Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy
Q104799635	Machine learning based CRISPR gRNA design for therapeutic exon skipping
Q41876045	Machine learning estimates of natural product conformational energies
Q38945522	Machine learning methods enable predictive modeling of antibody feature:function relationships in RV144 vaccinees
Q113308744	Machine learning modeling of family wide enzyme-substrate specificity screens
Q113309281	Machine learning reveals mesenchymal breast carcinoma cell adaptation in response to matrix stiffness
Q45944679	Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization.
Q100483454	Machine learning to predict mesenchymal stem cell efficacy for cartilage repair
Q89972130	Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens
Q112613469	Machine learning-based investigation of the cancer protein secretory pathway
Q92564087	Machine learning-based microarray analyses indicate low-expression genes might collectively influence PAH disease
Q113308777	Machine learning-driven identification of drugs inhibiting cytochrome P450 2C9
Q31159059	Machine-learning approaches for classifying haplogroup from Y chromosome STR data
Q35018027	Machines vs. ensembles: effective MAPK signaling through heterogeneous sets of protein complexes
Q34145653	Macro-level modeling of the response of C. elegans reproduction to chronic heat stress
Q36205485	Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion
Q91882950	Macroscopic phase resetting-curves determine oscillatory coherence and signal transfer in inter-coupled neural circuits
Q114596581	Magnitude-sensitive reaction times reveal non-linear time costs in multi-alternative decision-making
Q27330028	Maintaining a cognitive map in darkness: the need to fuse boundary knowledge with path integration
Q35646313	Maintaining homeostasis by decision-making
Q58709831	Maintaining maximal metabolic flux by gene expression control
Q34045804	Making biomolecular simulations accessible in the post-Nobel Prize era.
Q33594374	Making informed choices about microarray data analysis
Q28553680	Malaria Elimination Campaigns in the Lake Kariba Region of Zambia: A Spatial Dynamical Model
Q36100463	Malaria Incidence Rates from Time Series of 2-Wave Panel Surveys
Q28486274	Malaria's missing number: calculating the human component of R0 by a within-host mechanistic model of Plasmodium falciparum infection and transmission
Q33394559	Malleable machines in transcription regulation: the mediator complex
Q34987972	Mammalian rest/activity patterns explained by physiologically based modeling
Q28751130	Mammalian sleep dynamics: how diverse features arise from a common physiological framework
Q33474765	Managing and analyzing next-generation sequence data
Q98614488	Managing disease outbreaks: The importance of vector mobility and spatially heterogeneous control
Q30253027	Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA
Q35742489	Manifold Based Optimization for Single-Cell 3D Genome Reconstruction
Q64243889	Mapping DNA sequence to transcription factor binding energy in vivo
Q33780994	Mapping dynamic histone acetylation patterns to gene expression in nanog-depleted murine embryonic stem cells
Q21145361	Mapping gene associations in human mitochondria using clinical disease phenotypes
Q33261807	Mapping information flow in sensorimotor networks
Q104468187	Mapping molar shapes on signaling pathways
Q113746376	Mapping of promoter usage QTL using RNA-seq data reveals their contributions to complex traits
Q35588512	Mapping shape to visuomotor mapping: learning and generalisation of sensorimotor behaviour based on contextual information.
Q35760976	Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm
Q28543006	Mapping the Pareto optimal design space for a functionally deimmunized biotherapeutic candidate
Q35822777	Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations
Q27331437	Mapping the environmental fitness landscape of a synthetic gene circuit
Q111323216	Mapping the gene network landscape of Alzheimer's disease through integrating genomics and transcriptomics
Q125364596	Mapping the semi-nested community structure of 3D chromosome contact networks
Q37288252	Mapping the structural and dynamical features of kinesin motor domains
Q64228033	Maps of variability in cell lineage trees
Q28553520	Markov Networks of Collateral Resistance: National Antimicrobial Resistance Monitoring System Surveillance Results from Escherichia coli Isolates, 2004-2012
Q35693509	Markov State Models Reveal a Two-Step Mechanism of miRNA Loading into the Human Argonaute Protein: Selective Binding followed by Structural Re-arrangement
Q112293425	Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitis
Q21003830	Mate choice and the origin of menopause
Q55287031	Material and shape perception based on two types of intensity gradient information.
Q35989857	Mathematical Model for Length Control by the Timing of Substrate Switching in the Type III Secretion System.
Q113309595	Mathematical Modeling Identifies Inhibitors of Apoptosis (IAPs) as Mediators of Positive Feedback and Bistability
Q35858749	Mathematical Modeling of Interacting Glucose-Sensing Mechanisms and Electrical Activity Underlying Glucagon-Like Peptide 1 Secretion
Q35830233	Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration
Q113309392	Mathematical analysis of robustness of oscillations in models of the mammalian circadian clock
Q28475201	Mathematical description of bacterial traveling pulses
Q113309236	Mathematical framework for place coding in the auditory system
Q98562741	Mathematical model and tool to explore shorter multi-drug therapy options for active pulmonary tuberculosis
Q28476561	Mathematical model of a cell size checkpoint
Q113309189	Mathematical model of a personalized neoantigen cancer vaccine and the human immune system
Q28539760	Mathematical model of a telomerase transcriptional regulatory network developed by cell-based screening: analysis of inhibitor effects and telomerase expression mechanisms
Q28478310	Mathematical model of viral kinetics in vitro estimates the number of E2-CD81 complexes necessary for hepatitis C virus entry
Q92121773	Mathematical model predicts anti-adhesion-antibiotic-debridement combination therapies can clear an antibiotic resistant infection
Q100446308	Mathematical model predicts response to chemotherapy in advanced non-resectable non-small cell lung cancer patients treated with platinum-based doublet
Q92561936	Mathematical model studies of the comprehensive generation of major and minor phyllotactic patterns in plants with a predominant focus on orixate phyllotaxis
Q41935394	Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization
Q21563509	Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability
Q47569610	Mathematical modeling identifies optimum lapatinib dosing schedules for the treatment of glioblastoma patients
Q113309274	Mathematical modeling of N-803 treatment in SIV-infected non-human primates
Q28542920	Mathematical modeling of bacterial kinetics to predict the impact of antibiotic colonic exposure and treatment duration on the amount of resistant enterobacteria excreted
Q101348823	Mathematical modeling of hepatitis C RNA replication, exosome secretion and virus release
Q35082155	Mathematical modeling of heterogeneous electrophysiological responses in human β-cells
Q113746482	Mathematical modeling of multiple pathways in colorectal carcinogenesis using dynamical systems with Kronecker structure
Q97596871	Mathematical modeling of plant cell fate transitions controlled by hormonal signals
Q113746490	Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies
Q35091201	Mathematical modeling of the Phoenix Rising pathway
Q113308450	Mathematical modeling of the microtubule detyrosination/tyrosination cycle for cell-based drug screening design
Q113746381	Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis
Q33617741	Mathematical modeling reveals kinetics of lymphocyte recirculation in the whole organism
Q89830547	Mathematical modeling to reveal breakthrough mechanisms in the HIV Antibody Mediated Prevention (AMP) trials
Q28473912	Mathematical modelling of DNA replication reveals a trade-off between coherence of origin activation and robustness against rereplication
Q28473094	Mathematical modelling of cell-fate decision in response to death receptor engagement
Q113309014	Mathematical modelling of human P2X-mediated plasma membrane electrophysiology and calcium dynamics in microglia
Q51738032	Mathematical modelling of the antibiotic-induced morphological transition of Pseudomonas aeruginosa.
Q98562774	Mathematical modelling reveals cellular dynamics within tumour spheroids
Q92488177	Mathematical modelling reveals unexpected inheritance and variability patterns of cell cycle parameters in mammalian cells
Q36279842	Mathematical models of tissue stem and transit target cell divisions and the risk of radiation- or smoking-associated cancer
Q90942901	Matrigel patterning reflects multicellular contractility
Q90970617	Matrix feedback enables diverse higher-order patterning of the extracellular matrix
Q28469032	Matrix formalism to describe functional states of transcriptional regulatory systems
Q30367129	Matt: local flexibility aids protein multiple structure alignment.
Q33598580	Maturation of GABAergic inhibition promotes strengthening of temporally coherent inputs among convergent pathways
Q113308443	MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments
Q28755007	Maximal extraction of biological information from genetic interaction data
Q34130170	Maximization of learning speed in the motor cortex due to neuronal redundancy
Q35856770	Maximizing Sensory Dynamic Range by Tuning the Cortical State to Criticality
Q21563485	Maximizing the information content of experiments in systems biology
Q101407007	Maximizing the reusability of gene expression data by predicting missing metadata
Q64097204	Maximum entropy and population heterogeneity in continuous cell cultures
Q45944363	Maximum entropy methods for extracting the learned features of deep neural networks.
Q35988588	Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity
Q33474810	Maximum-likelihood model averaging to profile clustering of site types across discrete linear sequences
Q112309510	McComedy: A user-friendly tool for next-generation individual-based modeling of microbial consumer-resource systems
Q42972620	Mean-fields and neural masses
Q96222896	Measurable health effects associated with the daylight saving time shift
Q34192829	Measured dynamic social contact patterns explain the spread of H1N1v influenza
Q34625287	Measurements of the impact of 3' end sequences on gene expression reveal wide range and sequence dependent effects
Q33279152	Measures of clade confidence do not correlate with accuracy of phylogenetic trees
Q35683361	Measuring Asymmetry in Time-Stamped Phylogenies
Q35648251	Measuring Fisher information accurately in correlated neural populations
Q34288728	Measuring Granger causality between cortical regions from voxelwise fMRI BOLD signals with LASSO.
Q35900370	Measuring Integrated Information from the Decoding Perspective
Q113308854	Measuring context dependency in birdsong using artificial neural networks
Q38644336	Measuring distance through dense weighted networks: The case of hospital-associated pathogens
Q33332599	Measuring global credibility with application to local sequence alignment.
Q104607092	Measuring spectrally-resolved information transfer
Q33799118	Measuring the evolutionary rewiring of biological networks
Q92956621	Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences
Q113308730	Measuring the repertoire of age-related behavioral changes in Drosophila melanogaster
Q113265286	Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics
Q35988571	Mechanical Stress Induces Remodeling of Vascular Networks in Growing Leaves
Q28535108	Mechanical and assembly units of viral capsids identified via quasi-rigid domain decomposition
Q27321319	Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro
Q55515902	Mechanical evolution of DNA double-strand breaks in the nucleosome.
Q108792241	Mechanical feedback and robustness of apical constrictions in Drosophila embryo ventral furrow formation
Q48218476	Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis.
Q27335952	Mechanical network in titin immunoglobulin from force distribution analysis
Q55434621	Mechanical positioning of multiple nuclei in muscle cells.
Q93011706	Mechanical properties of tubulin intra- and inter-dimer interfaces and their implications for microtubule dynamic instability
Q33513957	Mechanical strength of 17,134 model proteins and cysteine slipknots
Q34276967	Mechanical stress inference for two dimensional cell arrays
Q55332541	Mechanical unfolding reveals stable 3-helix intermediates in talin and α-catenin.
Q28474265	Mechanics and dynamics of X-chromosome pairing at X inactivation
Q33316816	Mechanics of channel gating of the nicotinic acetylcholine receptor
Q21563480	Mechanics of undulatory swimming in a frictional fluid
Q27317825	Mechanism for Collective Cell Alignment in Myxococcus xanthus Bacteria
Q28550745	Mechanism of Focal Adhesion Kinase Mechanosensing
Q30382831	Mechanism of Iron-Dependent Repressor (IdeR) Activation and DNA Binding: A Molecular Dynamics and Protein Structure Network Study
Q33417618	Mechanism of action of cyclophilin a explored by metadynamics simulations
Q34426349	Mechanism of bacterial signal transduction revealed by molecular dynamics of Tsr dimers and trimers of dimers in lipid vesicles.
Q28474948	Mechanism of microRNA-target interaction: molecular dynamics simulations and thermodynamics analysis
Q113309475	Mechanisms of Firing Patterns in Fast-Spiking Cortical Interneurons
Q37713962	Mechanisms of fast and stringent search in homologous pairing of double-stranded DNA.
Q28469276	Mechanisms of firing patterns in fast-spiking cortical interneurons
Q36392899	Mechanisms of generation of membrane potential resonance in a neuron with multiple resonant ionic currents
Q64986220	Mechanisms of hysteresis in human brain networks during transitions of consciousness and unconsciousness: Theoretical principles and empirical evidence.
Q35630511	Mechanisms of left-right coordination in mammalian locomotor pattern generation circuits: a mathematical modeling view
Q33859382	Mechanisms of magnetic stimulation of central nervous system neurons
Q113309122	Mechanisms of ventricular arrhythmias elicited by coexistence of multiple electrophysiological remodeling in ischemia: A simulation study
Q35157023	Mechanisms of zero-lag synchronization in cortical motifs
Q36395134	Mechanisms underlying a thalamocortical transformation during active tactile sensation
Q90742997	Mechanisms underlying attraction to odors in walking Drosophila
Q36362928	Mechanisms underlying different onset patterns of focal seizures.
Q28550313	Mechanistic Mathematical Modeling Tests Hypotheses of the Neurovascular Coupling in fMRI
Q36163627	Mechanistic Modelling and Bayesian Inference Elucidates the Variable Dynamics of Double-Strand Break Repair.
Q27331810	Mechanistic basis of branch-site selection in filamentous bacteria
Q111323721	Mechanistic basis of post-treatment control of SIV after anti-α4β7 antibody therapy
Q64235564	Mechanistic framework predicts drug-class specific utility of antiretrovirals for HIV prophylaxis
Q60310162	Mechanistic insight into spontaneous transition from cellular alternans to arrhythmia-A simulation study
Q96770594	Mechanistic model of hormonal contraception
Q34998162	Mechanistic model of natural killer cell proliferative response to IL-15 receptor stimulation
Q94563466	Mechanistic modeling of light-induced chemotactic infiltration of bacteria into leaf stomata
Q47228068	Mechanistic modeling quantifies the influence of tumor growth kinetics on the response to anti-angiogenic treatment.
Q91629792	Mechanistic models of PLC/PKC signaling implicate phosphatidic acid as a key amplifier of chemotactic gradient sensing
Q28540030	Mechanistic, mathematical model to predict the dynamics of tissue genesis in bone defects via mechanical feedback and mediation of biochemical factors
Q28554571	Mechano-chemical Interactions in Cardiac Sarcomere Contraction: A Computational Modeling Study
Q96693349	Mechanobiological model for simulation of injured cartilage degradation via pro-inflammatory cytokines and mechanical stimulus
Q28469135	Mechanochemical coupling in the myosin motor domain. I. Insights from equilibrium active-site simulations
Q113309545	Mechanochemical coupling in the myosin motor domain. I. Insights from equilibrium active-site simulations
Q28469141	Mechanochemical coupling in the myosin motor domain. II. Analysis of critical residues
Q113309543	Mechanochemical coupling in the myosin motor domain. II. Analysis of critical residues
Q94457557	Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions
Q52654026	Meet-U: Educating through research immersion.
Q28551400	Melanoma Cell Colony Expansion Parameters Revealed by Approximate Bayesian Computation
Q35827395	Membrane Mechanics of Endocytosis in Cells with Turgor.
Q21563474	Membrane binding of MinE allows for a comprehensive description of Min-protein pattern formation
Q113308658	Membrane contact probability: An essential and predictive character for the structural and functional studies of membrane proteins
Q28541111	Membrane interaction of bound ligands contributes to the negative binding cooperativity of the EGF receptor
Q35488869	Membrane partitioning of anionic, ligand-coated nanoparticles is accompanied by ligand snorkeling, local disordering, and cholesterol depletion
Q48105775	Membrane perturbing properties of toxin mycolactone from Mycobacterium ulcerans
Q34139912	Membrane properties and the balance between excitation and inhibition control gamma-frequency oscillations arising from feedback inhibition
Q27326694	Membrane sculpting by F-BAR domains studied by molecular dynamics simulations
Q101044743	Membrane thinning and lateral gating are consistent features of BamA across multiple species
Q112577585	Membrane-binding mechanism of the EEA1 FYVE domain revealed by multi-scale molecular dynamics simulations
Q34456059	Membrane-elasticity model of Coatless vesicle budding induced by ESCRT complexes
Q27320008	Membrane-mediated interaction between strongly anisotropic protein scaffolds
Q112608145	Memes: A motif analysis environment in R using tools from the MEME Suite
Q113308934	Memories in a network with excitatory and inhibitory plasticity are encoded in the spiking irregularity
Q35220816	Memory capacity of networks with stochastic binary synapses
Q50422326	Memory functions reveal structural properties of gene regulatory networks.
Q35294160	Memory maintenance in synapses with calcium-based plasticity in the presence of background activity
Q36263755	Memory replay in balanced recurrent networks
Q113309098	Memory shapes microbial populations
Q35625140	Memory storage fidelity in the hippocampal circuit: the role of subregions and input statistics
Q28473087	Memory switches in chemical reaction space
Q33778233	Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders.
Q36262396	Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks
Q35294264	Mesoscopic model and free energy landscape for protein-DNA binding sites: analysis of cyanobacterial promoters
Q27329414	Mesoscopic model of actin-based propulsion
Q35559313	Mesoscopic segregation of excitation and inhibition in a brain network model
Q27322464	Messages do diffuse faster than messengers: reconciling disparate estimates of the morphogen bicoid diffusion coefficient
Q104753999	MetGEMs Toolbox: Metagenome-scale models as integrative toolbox for uncovering metabolic functions and routes of human gut microbiome
Q33697612	MetMap enables genome-scale Methyltyping for determining methylation states in populations
Q113309447	Meta-analysis of Drosophila Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes
Q33305004	Meta-analysis of Drosophila circadian microarray studies identifies a novel set of rhythmically expressed genes
Q33264401	Meta-analysis of differentiating mouse embryonic stem cell gene expression kinetics reveals early change of a small gene set.
Q28472207	Meta-analysis of inter-species liver co-expression networks elucidates traits associated with common human diseases
Q112289308	Meta-analysis of transcriptomic data reveals clusters of consistently deregulated gene and disease ontologies in Down syndrome
Q113308719	Meta-control of social learning strategies
Q35764740	Metabolic Adaptation Processes That Converge to Optimal Biomass Flux Distributions
Q28547439	Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis
Q113309458	Metabolic Reconstruction and Modeling of Nitrogen Fixation in Rhizobium etli
Q27323496	Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities
Q28536645	Metabolic constraint-based refinement of transcriptional regulatory networks
Q47167442	Metabolic dynamics restricted by conserved carriers: Jamming and feedback.
Q49925011	Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield.
Q33727984	Metabolic factors limiting performance in marathon runners
Q59804781	Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes
Q36396861	Metabolic network segmentation: A probabilistic graphical modeling approach to identify the sites and sequential order of metabolic regulation from non-targeted metabolomics data.
Q33549712	Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes
Q100406774	Metabolic pathway inference using multi-label classification with rich pathway features
Q48141979	Metabolic plasticity in synthetic lethal mutants: Viability at higher cost.
Q28469320	Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli
Q21092513	Metabolic reconstruction for metagenomic data and its application to the human microbiome
Q34064185	Metabolic regulation in progression to autoimmune diabetes
Q36276893	Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli.
Q92656997	Metabolic reprogramming dynamics in tumor spheroids: Insights from a multicellular, multiscale model
Q47136947	Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy
Q31164389	Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
Q34732259	Metadynamics simulations reveal a Na+ independent exiting path of galactose for the inward-facing conformation of vSGLT
Q36072751	Metagenome and Metatranscriptome Analyses Using Protein Family Profiles
Q30835908	Metagenomic data utilization and analysis (MEDUSA) and construction of a global gut microbial gene catalogue
Q112726894	Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)
Q34561871	Metallochaperones regulate intracellular copper levels
Q35636421	Metapopulation persistence in random fragmented landscapes
Q112280069	Metaproteomics as a tool for studying the protein landscape of human-gut bacterial species
Q113308472	Metastable spiking networks in the replica-mean-field limit
Q113308657	Meteorological factors and non-pharmaceutical interventions explain local differences in the spread of SARS-CoV-2 in Austria
Q52666813	Method for the simulation of blood platelet shape and its evolution during activation.
Q92078321	Methodological challenges in translational drug response modeling in cancer: A systematic analysis with FORESEE
Q90390417	Methods detecting rhythmic gene expression are biologically relevant only for strong signal
Q62649542	Methods for computing the maximum performance of computational models of fMRI responses
Q35596601	Metrics for assessing cytoskeletal orientational correlations and consistency
Q112612201	MiMeNet: Exploring microbiome-metabolome relationships using neural networks
Q35862624	MiR-192-Mediated Positive Feedback Loop Controls the Robustness of Stress-Induced p53 Oscillations in Breast Cancer Cells
Q112701820	Micro-dissection and integration of long and short reads to create a robust catalog of kidney compartment-specific isoforms
Q35052989	MicroRNA-gene association as a prognostic biomarker in cancer exposes disease mechanisms
Q36546957	MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression
Q113309408	Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures
Q31061401	Microarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells
Q33320174	Microarray based diagnosis profits from better documentation of gene expression signatures
Q33495549	Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens
Q112608181	MicrobeTrace: Retooling molecular epidemiology for rapid public health response
Q28481283	Microbial co-occurrence relationships in the human microbiome
Q95846049	Microbial communities display alternative stable states in a fluctuating environment
Q38465717	Microbial forensics: predicting phenotypic characteristics and environmental conditions from large-scale gene expression profiles
Q112702260	Microbiome-based disease prediction with multimodal variational information bottlenecks
Q124981102	MicrobiomeCensus estimates human population sizes from wastewater samples based on inter-individual variability in gut microbiomes
Q30002310	Microblogging the ISMB: A New Approach to Conference
Q39266434	Microenvironmental variables must influence intrinsic phenotypic parameters of cancer stem cells to affect tumourigenicity
Q64960598	Microheterogeneity-induced conduction slowing and wavefront collisions govern macroscopic conduction behavior: A computational and experimental study.
Q113308865	Microsimulation based quantitative analysis of COVID-19 management strategies
Q64120562	Microstimulation in a spiking neural network model of the midbrain superior colliculus
Q98902107	Microtubule instability driven by longitudinal and lateral strain propagation
Q36328182	Migration of small ligands in globins: Xe diffusion in truncated hemoglobin N.
Q58773310	MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
Q36288456	Mindboggling morphometry of human brains.
Q36188413	MinePath: Mining for Phenotype Differential Sub-paths in Molecular Pathways.
Q104791377	Minimal biophysical model of combined antibiotic action
Q113308707	Minimal cross-trial generalization in learning the representation of an odor-guided choice task
Q28475440	Minimal mesoscale model for protein-mediated vesiculation in clathrin-dependent endocytosis
Q55385720	Minimal model of interictal and ictal discharges "Epileptor-2".
Q33859377	Minimal models of multidimensional computations
Q34162236	Minimal size of cell assemblies coordinated by gamma oscillations
Q33532575	Minimization of biosynthetic costs in adaptive gene expression responses of yeast to environmental changes
Q100381349	Minimizing the number of optimizations for efficient community dynamic flux balance analysis
Q21145328	Minimum Information About a Simulation Experiment (MIASE)
Q33441389	Minimum criteria for DNA damage-induced phase advances in circadian rhythms.
Q27330358	Minimum free energy path of ligand-induced transition in adenylate kinase
Q113308690	Mining folded proteomes in the era of accurate structure prediction
Q35147602	Mining host-pathogen protein interactions to characterize Burkholderia mallei infectivity mechanisms.
Q35860126	Mirrored STDP Implements Autoencoder Learning in a Network of Spiking Neurons
Q111508057	Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants
Q100939892	Misuse of the Michaelis-Menten rate law for protein interaction networks and its remedy
Q113309222	Mitigating COVID-19 outbreaks in workplaces and schools by hybrid telecommuting
Q30400112	Mitigation strategies for pandemic influenza A: balancing conflicting policy objectives
Q33829005	Mitochondrial respiration and ROS emission during β-oxidation in the heart: An experimental-computational study.
Q21563492	Mitochondrial variability as a source of extrinsic cellular noise
Q30412252	Mixed signal learning by spike correlation propagation in feedback inhibitory circuits.
Q36371998	Mixture models reveal multiple positional bias types in RNA-Seq data and lead to accurate transcript concentration estimates
Q42136595	Mobility can promote the evolution of cooperation via emergent self-assortment dynamics
Q36062441	Model Constrained by Visual Hierarchy Improves Prediction of Neural Responses to Natural Scenes
Q104791292	Model based planners reflect on their model-free propensities
Q113309221	Model checking via testing for direct effects in Mendelian Randomization and transcriptome-wide association studies
Q31036368	Model cortical association fields account for the time course and dependence on target complexity of human contour perception
Q64073904	Model diagnostics and refinement for phylodynamic models
Q115020734	Model guided trait-specific co-expression network estimation as a new perspective for identifying molecular interactions and pathways
Q35022279	Model of fission yeast cell shape driven by membrane-bound growth factors and the cytoskeleton
Q33519509	Model of transcriptional activation by MarA in Escherichia coli
Q35186818	Model selection in systems biology depends on experimental design
Q35887904	Model-Based Analysis of Cell Cycle Responses to Dynamically Changing Environments
Q36087549	Model-Based Characterization of Inflammatory Gene Expression Patterns of Activated Macrophages.
Q35900399	Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics.
Q35866716	Model-Based Evaluation of Spontaneous Tumor Regression in Pilocytic Astrocytoma
Q35778665	Model-Based Reasoning in Humans Becomes Automatic with Training
Q35930512	Model-Driven Understanding of Palmitoylation Dynamics: Regulated Acylation of the Endoplasmic Reticulum Chaperone Calnexin
Q28547350	Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA
Q113309597	Model-based Design of Growth-attenuated Viruses
Q28540805	Model-based analysis for qualitative data: an application in Drosophila germline stem cell regulation
Q31129446	Model-based analysis of HER activation in cells co-expressing EGFR, HER2 and HER3
Q52642742	Model-based analysis of competing-endogenous pathways (MACPath) in human cancers.
Q64056708	Model-based analysis of influenza A virus replication in genetically engineered cell lines elucidates the impact of host cell factors on key kinetic parameters of virus growth
Q89972090	Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines
Q101126441	Model-based and phylogenetically adjusted quantification of metabolic interaction between microbial species
Q96770621	Model-based approach for predicting the impact of genetic modifications on product yield in biopharmaceutical manufacturing-Application to influenza vaccine production
Q27335491	Model-based deconvolution of cell cycle time-series data reveals gene expression details at high resolution
Q103744259	Model-based decoupling of evoked and spontaneous neural activity in calcium imaging data
Q33256104	Model-based design of growth-attenuated viruses
Q33343449	Model-based hypothesis testing of key mechanisms in initial phase of insulin signaling
Q113309217	Model-based identification of conditionally-essential genes from transposon-insertion sequencing data
Q58730518	Model-based spatial navigation in the hippocampus-ventral striatum circuit: A computational analysis
Q33402443	Model-based therapeutic correction of hypothalamic-pituitary-adrenal axis dysfunction
Q28543921	Model-based traction force microscopy reveals differential tension in cellular actin bundles
Q113308431	Model-based translation of DNA damage signaling dynamics across cell types
Q113308886	Model-checking ecological state-transition graphs
Q98508235	Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4
Q90970645	Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling
Q47224220	Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells
Q34395234	Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals
Q93013441	Model-inferred mechanisms of liver function from magnetic resonance imaging data: Validation and variation across a clinically relevant cohort
Q111322112	Modeling CRISPR gene drives for suppression of invasive rodents using a supervised machine learning framework
Q28554588	Modeling Cellular Noise Underlying Heterogeneous Cell Responses in the Epidermal Growth Factor Signaling Pathway
Q33363076	Modeling ChIP sequencing in silico with applications
Q28555067	Modeling Contact Inhibition of Locomotion of Colliding Cells Migrating on Micropatterned Substrates
Q26779602	Modeling Electrophysiological Coupling and Fusion between Human Mesenchymal Stem Cells and Cardiomyocytes
Q28551521	Modeling Fatty Acid Transfer from Artery to Cardiomyocyte
Q28469088	Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data
Q28483642	Modeling HIV-1 drug resistance as episodic directional selection
Q102205287	Modeling HIV-1 infection in the brain
Q35690724	Modeling Inhibitory Interneurons in Efficient Sensory Coding Models
Q36063136	Modeling Inter-trial Variability of Saccade Trajectories: Effects of Lesions of the Oculomotor Part of the Fastigial Nucleus
Q113309246	Modeling NaV1.1/SCN1A sodium channel mutations in a microcircuit with realistic ion concentration dynamics suggests differential GABAergic mechanisms leading to hyperexcitability in epilepsy and hemiplegic migraine
Q113309493	Modeling Systems-Level Regulation of Host Immune Responses
Q114054792	Modeling age-specific incidence of colon cancer via niche competition
Q36255355	Modeling an Excitable Biosynthetic Tissue with Inherent Variability for Paired Computational-Experimental Studies
Q33320184	Modeling an evolutionary conserved circadian cis-element
Q113309402	Modeling an evolutionary conserved circadian cis-element
Q28387059	Modeling and Classification of Kinetic Patterns of Dynamic Metabolic Biomarkers in Physical Activity
Q64091680	Modeling and MEG evidence of early consonance processing in auditory cortex
Q28553402	Modeling and Simulation of Mucus Flow in Human Bronchial Epithelial Cell Cultures - Part I: Idealized Axisymmetric Swirling Flow
Q27334606	Modeling and dynamics of the inward-facing state of a Na+/Cl- dependent neurotransmitter transporter homologue
Q33466744	Modeling and inferring cleavage patterns in proliferating epithelia
Q34711760	Modeling and measuring signal relay in noisy directed migration of cell groups.
Q58739168	Modeling and prediction of clinical symptom trajectories in Alzheimer's disease using longitudinal data
Q58098402	Modeling and subtleties of K-Ras and Calmodulin interaction
Q40043861	Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies
Q125416543	Modeling bee movement shows how a perceptual masking effect can influence flower discovery
Q28540806	Modeling bi-modality improves characterization of cell cycle on gene expression in single cells
Q90159864	Modeling binary and graded cone cell fate patterning in the mouse retina
Q34325445	Modeling boundary vector cell firing given optic flow as a cue.
Q27332229	Modeling brain resonance phenomena using a neural mass model
Q33320177	Modeling cancer progression via pathway dependencies
Q113308440	Modeling cell biological features of meiotic chromosome pairing to study interlock resolution
Q61814644	Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor
Q33680672	Modeling chemotaxis reveals the role of reversed phosphotransfer and a bi-functional kinase-phosphatase
Q33543175	Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells
Q27334291	Modeling conformational ensembles of slow functional motions in Pin1-WW
Q113308832	Modeling cortical synaptic effects of anesthesia and their cholinergic reversal
Q34167844	Modeling cortisol dynamics in the neuro-endocrine axis distinguishes normal, depression, and post-traumatic stress disorder (PTSD) in humans
Q59807837	Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch
Q91805421	Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa
Q64109139	Modeling differentiation-state transitions linked to therapeutic escape in triple-negative breast cancer
Q30400966	Modeling disordered protein interactions from biophysical principles
Q58617890	Modeling driver cells in developing neuronal networks
Q34446615	Modeling dynamic regulatory processes in stroke
Q34393708	Modeling dynamics of cell-to-cell variability in TRAIL-induced apoptosis explains fractional killing and predicts reversible resistance
Q57285978	Modeling effects of voltage dependent properties of the cardiac muscarinic receptor on human sinus node function
Q64938943	Modeling enamel matrix secretion in mammalian teeth.
Q27333860	Modeling evolutionary dynamics of epigenetic mutations in hierarchically organized tumors
Q104607801	Modeling habitat connectivity in support of multiobjective species movement: An application to amphibian habitat systems
Q31172256	Modeling higher-order correlations within cortical microcolumns
Q92072631	Modeling human intuitions about liquid flow with particle-based simulation
Q64058452	Modeling individual time courses of thrombopoiesis during multi-cyclic chemotherapy
Q120920165	Modeling influenza seasonality in the tropics and subtropics
Q28534912	Modeling integrated cellular machinery using hybrid Petri-Boolean networks
Q111490249	Modeling invasion patterns in the glioblastoma battlefield
Q58601356	Modeling large fluctuations of thousands of clones during hematopoiesis: The role of stem cell self-renewal and bursty progenitor dynamics in rhesus macaque
Q33510903	Modeling latently infected cell activation: viral and latent reservoir persistence, and viral blips in HIV-infected patients on potent therapy
Q33529037	Modeling magnification and anisotropy in the primate foveal confluence
Q28476416	Modeling mechanisms of in vivo variability in methotrexate accumulation and folate pathway inhibition in acute lymphoblastic leukemia cells
Q34263005	Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition.
Q92876693	Modeling metabolic networks of individual bacterial agents in heterogeneous and dynamic soil habitats (IndiMeSH)
Q98562669	Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence
Q98781710	Modeling microbial metabolic trade-offs in a chemostat
Q28472328	Modeling mitochondrial bioenergetics with integrated volume dynamics
Q126127539	Modeling multi-sensory feedback control of zebrafish in a flow
Q35133283	Modeling mutual exclusivity of cancer mutations
Q28469165	Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation
Q64073900	Modeling neuronal avalanches and long-range temporal correlations at the emergence of collective oscillations: Continuously varying exponents mimic M/EEG results
Q112580310	Modeling of DNA binding to the condensin hinge domain using molecular dynamics simulations guided by atomic force microscopy
Q37119189	Modeling of Kidney Hemodynamics: Probability-Based Topology of an Arterial Network
Q27315994	Modeling of Large-Scale Functional Brain Networks Based on Structural Connectivity from DTI: Comparison with EEG Derived Phase Coupling Networks and Evaluation of Alternative Methods along the Modeling Path
Q96648764	Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis
Q34395206	Modeling of gap gene expression in Drosophila Kruppel mutants
Q33257708	Modeling of oxygen transport and cellular energetics explains observations on in vivo cardiac energy metabolism
Q28481567	Modeling of pharmacokinetics of cocaine in human reveals the feasibility for development of enzyme therapies for drugs of abuse
Q36291730	Modeling of the axon membrane skeleton structure and implications for its mechanical properties
Q64071681	Modeling of the axon plasma membrane structure and its effects on protein diffusion
Q28542600	Modeling of the dorsal gradient across species reveals interaction between embryo morphology and Toll signaling pathway during evolution
Q28483742	Modeling phenotypic metabolic adaptations of Mycobacterium tuberculosis H37Rv under hypoxia
Q34262976	Modeling planarian regeneration: a primer for reverse-engineering the worm.
Q34468868	Modeling protective anti-tumor immunity via preventative cancer vaccines using a hybrid agent-based and delay differential equation approach.
Q33370531	Modeling recursive RNA interference
Q33576702	Modeling reveals bistability and low-pass filtering in the network module determining blood stem cell fate
Q113308410	Modeling scenarios for mitigating outbreaks in congregate settings
Q64082049	Modeling second-order boundary perception: A machine learning approach
Q57788602	Modeling sensory-motor decisions in natural behavior
Q27335863	Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full-length dimer
Q21563511	Modeling somatic evolution in tumorigenesis
Q21145352	Modeling structure-function relationships in synthetic DNA sequences using attribute grammars
Q56750626	Modeling subjective relevance in schizophrenia and its relation to aberrant salience
Q124883519	Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics
Q33287189	Modeling systems-level regulation of host immune responses
Q28554352	Modeling the Effects of Morphine on Simian Immunodeficiency Virus Dynamics
Q35818669	Modeling the Evolution of Beliefs Using an Attentional Focus Mechanism.
Q35970474	Modeling the Excess Cell Surface Stored in a Complex Morphology of Bleb-Like Protrusions
Q30974438	Modeling the Impact of White-Plague Coral Disease in Climate Change Scenarios
Q28551803	Modeling the Slow CD4+ T Cell Decline in HIV-Infected Individuals
Q100420412	Modeling the activation of the alternative complement pathway and its effects on hemolysis in health and disease
Q46659507	Modeling the adenosine system as a modulator of cognitive performance and sleep patterns during sleep restriction and recovery.
Q35069145	Modeling the afferent dynamics of the baroreflex control system
Q24817207	Modeling the amplification dynamics of human Alu retrotransposons
Q47564219	Modeling the assembly order of multimeric heteroprotein complexes
Q91796626	Modeling the daily rhythm of human pain processing in the dorsal horn
Q52625704	Modeling the dynamics of oligodendrocyte precursor cells and the genesis of gliomas.
Q35004421	Modeling the effect of APC truncation on destruction complex function in colorectal cancer cells
Q113309324	Modeling the effects of Aedes aegypti’s larval environment on adult body mass at emergence
Q33325884	Modeling the effects of cell cycle M-phase transcriptional inhibition on circadian oscillation
Q95845433	Modeling the effects of motivation on choice and learning in the basal ganglia
Q100310667	Modeling the efficiency of filovirus entry into cells in vitro: Effects of SNP mutations in the receptor molecule
Q33780964	Modeling the evolution of regulatory elements by simultaneous detection and alignment with phylogenetic pair HMMs
Q55304152	Modeling the functions of condensin in chromosome shaping and segregation.
Q48021263	Modeling the genetic relatedness of Plasmodium falciparum parasites following meiotic recombination and cotransmission
Q56776251	Modeling the impact of changes in day-care contact patterns on the dynamics of varicella transmission in France between 1991 and 2015
Q33466741	Modeling the impact of lesions in the human brain
Q49980737	Modeling the interactions of sense and antisense Period transcripts in the mammalian circadian clock network.
Q113308906	Modeling the onset of symptoms of COVID-19: Effects of SARS-CoV-2 variant
Q34426381	Modeling the seasonal adaptation of circadian clocks by changes in the network structure of the suprachiasmatic nucleus
Q107980540	Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers
Q113308750	Modeling the temporal dynamics of master regulators and CtrA proteolysis in Caulobacter crescentus cell cycle
Q93075050	Modeling the temporal dynamics of the gut microbial community in adults and infants
Q95845446	Modeling the temporal network dynamics of neuronal cultures
Q33358658	Modeling the violation of reward maximization and invariance in reinforcement schedules
Q98508280	Modeling time-varying brain networks with a self-tuning optimized Kalman filter
Q28542375	Modeling viral evolutionary dynamics after telaprevir-based treatment
Q92269652	Modeling visual performance differences 'around' the visual field: A computational observer approach
Q48182975	Modeling visual-based pitch, lift and speed control strategies in hoverflies
Q34325485	Modeling within-host dynamics of influenza virus infection including immune responses
Q37509562	Modeling within-host effects of drugs on Plasmodium falciparum transmission and prospects for malaria elimination
Q35908211	Modelling Feedback Excitation, Pacemaker Properties and Sensory Switching of Electrically Coupled Brainstem Neurons Controlling Rhythmic Activity
Q35801614	Modelling Odor Decoding in the Antennal Lobe by Combining Sequential Firing Rate Models with Bayesian Inference
Q36244408	Modelling Systemic Iron Regulation during Dietary Iron Overload and Acute Inflammation: Role of Hepcidin-Independent Mechanisms
Q36306128	Modelling T cell proliferation: Dynamics heterogeneity depending on cell differentiation, age, and genetic background
Q36026321	Modelling Virus and Antibody Dynamics during Dengue Virus Infection Suggests a Role for Antibody in Virus Clearance
Q113308759	Modelling brain representations of abstract concepts
Q34318166	Modelling cell polarization driven by synthetic spatially graded Rac activation
Q35610546	Modelling circulating tumour cells for personalised survival prediction in metastatic breast cancer
Q28533871	Modelling co-infection with malaria and lymphatic filariasis
Q113309207	Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants
Q125405822	Modelling daily weight variation in honey bee hives
Q34550707	Modelling growth and form of the scleractinian coral Pocillopora verrucosa and the influence of hydrodynamics
Q34531134	Modelling hair follicle growth dynamics as an excitable medium
Q59357098	Modelling how responsiveness to interferon improves interferon-free treatment of hepatitis C virus infection
Q35097089	Modelling individual differences in the form of Pavlovian conditioned approach responses: a dual learning systems approach with factored representations
Q113308840	Modelling interference between vectors of non-persistently transmitted plant viruses to identify effective control strategies
Q113238598	Modelling livestock infectious disease control policy under differing social perspectives on vaccination behaviour
Q35165708	Modelling negative feedback networks for activating transcription factor 3 predicts a dominant role for miRNAs in immediate early gene regulation
Q36073952	Modelling of Yeast Mating Reveals Robustness Strategies for Cell-Cell Interactions
Q112273578	Modelling of malaria risk, rates, and trends: A spatiotemporal approach for identifying and targeting sub-national areas of high and low burden
Q36361812	Modelling of the cancer cell cycle as a tool for rational drug development: A systems pharmacology approach to cyclotherapy.
Q103744186	Modelling pathogen spread in a healthcare network: Indirect patient movements
Q126179269	Modelling quantitative fungicide resistance and breakdown of resistant cultivars: Designing integrated disease management strategies for Septoria of winter wheat
Q113309123	Modelling response strategies for controlling gonorrhoea outbreaks in men who have sex with men in Australia
Q34055243	Modelling reveals kinetic advantages of co-transcriptional splicing
Q28547133	Modelling the Effects of Electrical Coupling between Unmyelinated Axons of Brainstem Neurons Controlling Rhythmic Activity
Q113308557	Modelling the acclimation capacity of coral reefs to a warming ocean
Q95322013	Modelling the dynamics of tuberculosis lesions in a virtual lung: Role of the bronchial tree in endogenous reinfection
Q96032281	Modelling the effects of ephaptic coupling on selectivity and response patterns during artificial stimulation of peripheral nerves
Q33981247	Modelling the effects of population structure on childhood disease: the case of varicella.
Q27325580	Modelling the emergence and dynamics of perceptual organisation in auditory streaming
Q90303875	Modelling the epidemiology of residual Plasmodium vivax malaria in a heterogeneous host population: A case study in the Amazon Basin
Q126066888	Modelling the impact of JNJ-1802, a first-in-class dengue inhibitor blocking the NS3-NS4B interaction, on in-vitro DENV-2 dynamics
Q113308590	Modelling the interaction between stem cells derived cardiomyocytes patches and host myocardium to aid non-arrhythmic engineered heart tissue design
Q91650384	Modelling the mechanics of exploration in larval Drosophila
Q113308412	Modelling the modulation of cortical Up-Down state switching by astrocytes
Q34186919	Modelling the self-assembly of elastomeric proteins provides insights into the evolution of their domain architectures
Q113309278	Modelling the spatial and temporal constrains of the GABAergic influence on neuronal excitability
Q39535964	Modelling the spread of HIV immune escape mutants in a vaccinated population
Q64963505	Modelling the transport of fluid through heterogeneous, whole tumours in silico.
Q113309369	Modelling the visual world of a velvet worm
Q113309137	Modelling to explore the potential impact of asymptomatic human infections on transmission and dynamics of African sleeping sickness
Q30458006	Modelling trial-by-trial changes in the mismatch negativity
Q28476080	Modelling vesicular release at hippocampal synapses
Q100406796	Models of SIV rebound after treatment interruption that involve multiple reactivation events
Q113309271	Models of heterogeneous dopamine signaling in an insect learning and memory center
Q33987352	Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties
Q34916448	Models of self-peptide sampling by developing T cells identify candidate mechanisms of thymic selection
Q64944433	Models that learn how humans learn: The case of decision-making and its disorders.
Q92541195	Modern technologies and algorithms for scaffolding assembled genomes
Q33872104	Modification of gene duplicability during the evolution of protein interaction network
Q89972123	Modular analysis of the control of flagellar Ca2+-spike trains produced by CatSper and CaV channels in sea urchin sperm
Q113309021	Modular assembly of dynamic models in systems biology
Q35120083	Modular composition of gene transcription networks
Q28481407	Modular design of artificial tissue homeostasis: robust control through synthetic cellular heterogeneity
Q35996782	Modularity Induced Gating and Delays in Neuronal Networks
Q33267898	Modularity and dynamics of cellular networks
Q35739710	Modularity of Protein Folds as a Tool for Template-Free Modeling of Structures
Q34459159	Modulation of calmodulin lobes by different targets: an allosteric model with hemiconcerted conformational transitions
Q35540115	Modulation of elementary calcium release mediates a transition from puffs to waves in an IP3R cluster model
Q35103362	Modulation of network excitability by persistent activity: how working memory affects the response to incoming stimuli
Q28546597	Modulation of the disordered conformational ensembles of the p53 transactivation domain by cancer-associated mutations
Q58608478	Modulation of voltage-dependent K+ conductances in photoreceptors trades off investment in contrast gain for bandwidth
Q113308425	Modulation transfer functions for audiovisual speech
Q113309629	Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System
Q33251546	Module-based analysis of robustness tradeoffs in the heat shock response system
Q27316278	Molecular Dynamics of "Fuzzy" Transcriptional Activator-Coactivator Interactions
Q35987075	Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees
Q35912029	Molecular Mechanisms of Glutamine Synthetase Mutations that Lead to Clinically Relevant Pathologies
Q30837925	Molecular basis for evolving modularity in the yeast protein interaction network
Q60913129	Molecular basis for the increased affinity of an RNA recognition motif with re-engineered specificity: A molecular dynamics and enhanced sampling simulations study
Q113308828	Molecular basis of Arginine and Lysine DNA sequence-dependent thermo-stability modulation
Q27329175	Molecular basis of calcium-sensitizing and desensitizing mutations of the human cardiac troponin C regulatory domain: a multi-scale simulation study
Q58090905	Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Q34372273	Molecular constraints on synaptic tagging and maintenance of long-term potentiation: a predictive model
Q36406339	Molecular determinants for the thermodynamic and functional divergence of uniporter GLUT1 and proton symporter XylE.
Q112584025	Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactions
Q27334036	Molecular dynamics simulations of forced unbending of integrin α(v)β₃
Q27319873	Molecular dynamics simulations of the bacterial UraA H+-uracil symporter in lipid bilayers reveal a closed state and a selective interaction with cardiolipin
Q27329913	Molecular dynamics simulations reveal proton transfer pathways in cytochrome C-dependent nitric oxide reductase
Q27334466	Molecular dynamics simulations suggest that electrostatic funnel directs binding of Tamiflu to influenza N1 neuraminidases
Q27320227	Molecular dynamics study of the opening mechanism for DNA polymerase I
Q28484348	Molecular evolution of peptide ligands with custom-tailored characteristics for targeting of glycostructures
Q28542663	Molecular insights into the dynamics of pharmacogenetically important N-terminal variants of the human β2-adrenergic receptor
Q28482128	Molecular machines in the synapse: overlapping protein sets control distinct steps in neurosecretion
Q27324127	Molecular mechanical differences between isoforms of contractile actin in the presence of isoforms of smooth muscle tropomyosin
Q27335712	Molecular mechanics of the alpha-actinin rod domain: bending, torsional, and extensional behavior
Q91762152	Molecular mechanism for bidirectional regulation of CD44 for lipid raft affiliation by palmitoylations and PIP2
Q28484223	Molecular mechanism for the dual alcohol modulation of Cys-loop receptors
Q27327863	Molecular mechanism of allosteric communication in Hsp70 revealed by molecular dynamics simulations
Q27333699	Molecular mechanism of cyclodextrin mediated cholesterol extraction
Q113309090	Molecular mechanism of proton-coupled ligand translocation by the bacterial efflux pump EmrE
Q34795397	Molecular mechanisms in the activation of abscisic acid receptor PYR1.
Q91806174	Molecular mechanisms of fentanyl mediated β-arrestin biased signaling
Q91552691	Molecular noise of innate immunity shapes bacteria-phage ecologies
Q24816819	Molecular origin of polyglutamine aggregation in neurodegenerative diseases
Q113309681	Molecular origin of polyglutamine aggregation in neurodegenerative diseases
Q28473032	Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture
Q47271316	Molecular recognition and packing frustration in a helical protein
Q91917293	Molecular sampling at logarithmic rates for next-generation sequencing
Q112292692	Molecular signatures of silencing suppression degeneracy from a complex RNA virus
Q28655834	Molecular simulation-based structural prediction of protein complexes in mass spectrometry: the human insulin dimer
Q113309605	Molecular simulations of cotranslational protein folding: fragment stabilities, folding cooperativity and trapping in the ribosome tunnel
Q33247451	Molecular simulations of cotranslational protein folding: fragment stabilities, folding cooperativity, and trapping in the ribosome
Q33539722	Molecular structures of quiescently grown and brain-derived polymorphic fibrils of the Alzheimer amyloid abeta9-40 peptide: a comparison to agitated fibrils
Q24813252	Molecular switches at the synapse emerge from receptor and kinase traffic
Q30473737	Monkeys and humans share a common computation for face/voice integration
Q35656570	Monte Carlo Planning Method Estimates Planning Horizons during Interactive Social Exchange
Q28476003	Monte Carlo analysis of neck linker extension in kinesin molecular motors
Q113308955	More pests but less pesticide applications: Ambivalent effect of landscape complexity on conservation biological control
Q33649790	More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology
Q36257665	Morphological Transformation and Force Generation of Active Cytoskeletal Networks
Q35864403	Morphological and Stress Vulnerability Indices for Human Coronary Plaques and Their Correlations with Cap Thickness and Lipid Percent: An IVUS-Based Fluid-Structure Interaction Multi-patient Study
Q91923175	Morphophenotypic classification of tumor organoids as an indicator of drug exposure and penetration potential
Q40348247	Most Undirected Random Graphs Are Amplifiers of Selection for Birth-Death Dynamics, but Suppressors of Selection for Death-Birth Dynamics.
Q34058091	Most random gene expression signatures are significantly associated with breast cancer outcome
Q59809272	Moth olfactory receptor neurons adjust their encoding efficiency to temporal statistics of pheromone fluctuations
Q58084786	Motif-Aware PRALINE: Improving the alignment of motif regions
Q113308829	Motif-pattern dependence of biomolecular phase separation driven by specific interactions
Q34987950	Motility enhancement through surface modification is sufficient for cyanobacterial community organization during phototaxis
Q92123550	Motion prediction enables simulated MR-imaging of freely moving model organisms
Q92416611	Motion, fixation probability and the choice of an evolutionary process
Q35953675	Motor Demands Constrain Cognitive Rule Structures
Q113308558	Motor response vigour and visual fixation patterns reflect subjective valuation during intertemporal choice
Q113308692	Motor-related signals support localization invariance for stable visual perception
Q113309401	Mouse Cognition-Related Behavior in the Open-Field: Emergence of Places of Attraction
Q27338912	Mouse cognition-related behavior in the open-field: emergence of places of attraction
Q27320759	Mouse hair cycle expression dynamics modeled as coupled mesenchymal and epithelial oscillators
Q38599765	Mouth-clicks used by blind expert human echolocators - signal description and model based signal synthesis
Q60944626	Movement and conformity interact to establish local behavioural traditions in animal populations
Q21145356	Movement timing and invariance arise from several geometries
Q96590133	Moving analytical ultracentrifugation software to a good manufacturing practices (GMP) environment
Q33270509	Moving education forward
Q35069154	Moving education forward, again!
Q27339869	Moving forward moving backward: directional sorting of chemotactic cells due to size and adhesion differences
Q113308669	Moving in on human motor cortex. Characterizing the relationship between body parts with non-rigid population response fields
Q38696408	MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions
Q110632373	Multi-Scale Simulations Provide Supporting Evidence for the Hypothesis of Intramolecular Protein Translocation in GroEL/GroES Complexes
Q90190605	Multi-cell ECM compaction is predictable via superposition of nonlinear cell dynamics linearized in augmented state space
Q42705167	Multi-layer network utilizing rewarded spike time dependent plasticity to learn a foraging task.
Q34504840	Multi-level modeling of light-induced stomatal opening offers new insights into its regulation by drought
Q64234963	Multi-modality in gene regulatory networks with slow promoter kinetics
Q113308723	Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment
Q34607788	Multi-population classical HLA type imputation
Q35822566	Multi-scale Visualization of Molecular Architecture Using Real-Time Ambient Occlusion in Sculptor
Q38644349	Multi-scale approaches for high-speed imaging and analysis of large neural populations
Q60305730	Multi-scale computational study of the Warburg effect, reverse Warburg effect and glutamine addiction in solid tumors
Q36377660	Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia.
Q27325366	Multi-scale inference of interaction rules in animal groups using Bayesian model selection
Q56550778	Multi-scale inference of interaction rules in animal groups using Bayesian model selection
Q113308432	Multi-scale model suggests the trade-off between protein and ATP demand as a driver of metabolic changes during yeast replicative ageing
Q28480578	Multi-scale modeling of HIV infection in vitro and APOBEC3G-based anti-retroviral therapy
Q104574050	Multi-scale modeling of macrophage-T cell interactions within the tumor microenvironment
Q113309254	Multi-scale simulations of the T cell receptor reveal its lipid interactions, dynamics and the arrangement of its cytoplasmic region
Q33332461	Multi-scale simulations provide supporting evidence for the hypothesis of intramolecular protein translocation in GroEL/GroES complexes
Q33872107	Multi-scaled explorations of binding-induced folding of intrinsically disordered protein inhibitor IA3 to its target enzyme
Q89594271	Multi-state design of flexible proteins predicts sequences optimal for conformational change
Q18145441	Multi-state modeling of biomolecules
Q61810617	Multi-study inference of regulatory networks for more accurate models of gene regulation
Q34916522	Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures
Q112567589	Multi-targeting of K-Ras domains and mutations by peptide and small molecule inhibitors
Q35568085	Multi-timescale modeling of activity-dependent metabolic coupling in the neuron-glia-vasculature ensemble
Q113309363	Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics
Q108127013	Multidimensional analysis and detection of informative features in human brain white matter
Q35260820	Multidimensional epistasis and the transitory advantage of sex.
Q97640050	Multidimensional phenotyping predicts lifespan and quantifies health in C. elegans
Q38618285	Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment
Q113308885	Multifunctional RNA-binding proteins influence mRNA abundance and translational efficiency of distinct sets of target genes
Q113309359	Multilevel selection favors fragmentation modes that maintain cooperative interactions in multispecies communities
Q27335304	Multilevel selection in models of prebiotic evolution II: a direct comparison of compartmentalization and spatial self-organization
Q113309242	Multimeric structure enables the acceleration of KaiB-KaiC complex formation induced by ADP/ATP exchange inhibition
Q104607079	Multiobjective optimization identifies cancer-selective combination therapies
Q112302363	Multiphysics and multiscale modeling of microthrombosis in COVID-19
Q36246189	Multiple Choice Neurodynamical Model of the Uncertain Option Task.
Q30430879	Multiple estimates of transmissibility for the 2009 influenza pandemic based on influenza-like-illness data from small US military populations
Q64073913	Multiple factors influence the morphology of the bipolar electrogram: An in silico modeling study
Q34318178	Multiple genetic interaction experiments provide complementary information useful for gene function prediction
Q35145197	Multiple model-informed open-loop control of uncertain intracellular signaling dynamics
Q113308575	Multiple nutrient transporters enable cells to mitigate a rate-affinity tradeoff
Q89505424	Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties
Q34456021	Multiple spike time patterns occur at bifurcation points of membrane potential dynamics
Q91762008	Multiple-target tracking in human and machine vision
Q35613455	Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism
Q98193491	Multiplexing information flow through dynamic signalling systems
Q96770572	Multiplexing rhythmic information by spike timing dependent plasticity
Q36293796	Multiregional integration in the brain during resting-state fMRI activity
Q35855670	Multiscale Embedded Gene Co-expression Network Analysis
Q35822656	Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning
Q35781923	Multiscale Mechanical Model of the Pacinian Corpuscle Shows Depth and Anisotropy Contribute to the Receptor's Characteristic Response to Indentation
Q36085849	Multiscale Simulations Suggest a Mechanism for the Association of the Dok7 PH Domain with PIP-Containing Membranes
Q113309120	Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV
Q59127579	Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community
Q35377697	Multiscale approach to the determination of the photoactive yellow protein signaling state ensemble
Q33619186	Multiscale coarse-graining of the protein energy landscape
Q100953652	Multiscale community detection in Cytoscape
Q60955883	Multiscale computational model of Achilles tendon wound healing: Untangling the effects of repair and loading
Q113308867	Multiscale model for forecasting Sabin 2 vaccine virus household and community transmission
Q112750320	Multiscale model of defective interfering particle replication for influenza A virus infection in animal cell culture
Q64981875	Multiscale model of integrin adhesion assembly.
Q96617072	Multiscale modeling of human cerebrovasculature: A hybrid approach using image-based geometry and a mathematical algorithm
Q28535330	Multiscale modeling of influenza A virus infection supports the development of direct-acting antivirals
Q64234959	Multiscale modeling of influenza A virus replication in cell cultures predicts infection dynamics for highly different infection conditions
Q50421862	Multiscale modeling of layer formation in epidermis.
Q113308571	Multiscale modeling of presynaptic dynamics from molecular to mesoscale
Q28478218	Multiscale modeling of red blood cell mechanics and blood flow in malaria
Q52586102	Multiscale modelization in a small virus: Mechanism of proton channeling and its role in triggering capsid disassembly.
Q36272766	Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression
Q113309201	Multiscale representations of community structures in attractor neural networks
Q35879499	Multistability in Large Scale Models of Brain Activity
Q33388197	Multistable decision switches for flexible control of epigenetic differentiation
Q28483921	Multistationary and oscillatory modes of free radicals generation by the mitochondrial respiratory chain revealed by a bifurcation analysis
Q35529844	Multitask learning of signaling and regulatory networks with application to studying human response to flu
Q112641525	Multivariable association discovery in population-scale meta-omics studies
Q59127602	Multivariate classification of neuroimaging data with nested subclasses: Biased accuracy and implications for hypothesis testing
Q47115974	Multivariate pattern dependence
Q91507547	Multiview learning for understanding functional multiomics
Q30277364	Muscle Synergies Heavily Influence the Neural Control of Arm Endpoint Stiffness and Energy Consumption
Q30423301	Music in our ears: the biological bases of musical timbre perception
Q28478611	Mutation D816V alters the internal structure and dynamics of c-KIT receptor cytoplasmic region: implications for dimerization and activation mechanisms
Q33576690	Mutation bias favors protein folding stability in the evolution of small populations
Q100310772	Mutation bias interacts with composition bias to influence adaptive evolution
Q34372268	Mutation induced extinction in finite populations: lethal mutagenesis and lethal isolation
Q94937343	Mutation severity spectrum of rare alleles in the human genome is predictive of disease type
Q61450767	Mutation, drift and selection in single-driver hematologic malignancy: Example of secondary myelodysplastic syndrome following treatment of inherited neutropenia
Q113308515	Mutational analysis of SARS-CoV-2 variants of concern reveals key tradeoffs between receptor affinity and antibody escape
Q34597890	Mutational analysis of the high-affinity zinc binding site validates a refined human dopamine transporter homology model
Q113309394	Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation
Q33332467	Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation
Q33939668	Mutual inactivation of Notch receptors and ligands facilitates developmental patterning
Q27329971	Mutual repression enhances the steepness and precision of gene expression boundaries
Q64109146	Myopic control of neural dynamics
Q27322580	Myxococcus xanthus gliding motors are elastically coupled to the substrate as predicted by the focal adhesion model of gliding motility
Q35448374	NEMix: single-cell nested effects models for probabilistic pathway stimulation
Q35261339	NESmapper: accurate prediction of leucine-rich nuclear export signals using activity-based profiles
Q58718823	NFTsim: Theory and Simulation of Multiscale Neural Field Dynamics
Q104618679	NGS-PrimerPlex: High-throughput primer design for multiplex polymerase chain reactions
Q38767537	NHE inhibition does not improve Na(+) or Ca(2+) overload during reperfusion: using modeling to illuminate the mechanisms underlying a therapeutic failure
Q34270371	NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems.
Q24811547	NIH Roadmap interdisciplinary research initiatives
Q35907156	NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes
Q28552626	NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning
Q112758899	NMDA receptor inhibition increases, synchronizes, and stabilizes the collective pancreatic beta cell activity: Insights through multilayer network analysis
Q26766518	NMR Methods to Study Dynamic Allostery
Q113309554	NO Regulates Input-Specificity of LTD and Context Dependence of Cerebellar Learning
Q91917249	NUFEB: A massively parallel simulator for individual-based modelling of microbial communities
Q30437627	Nano-motion dynamics are determined by surface-tethered selectin mechanokinetics and bond formation
Q113309008	NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data
Q113308539	Nanoscale organization of ryanodine receptor distribution and phosphorylation pattern determines the dynamics of calcium sparks
Q111150153	Narrative event segmentation in the cortical reservoir
Q33493390	Nash equilibria in multi-agent motor interactions
Q35643122	Native contact density and nonnative hydrophobic effects in the folding of bacterial immunity proteins
Q113309484	Natively Unstructured Loops Differ from Other Loops
Q33292014	Natively unstructured loops differ from other loops
Q113309583	Natural Biocombinatorics in the Polyketide Synthase Genes of the Actinobacterium Streptomyces avermitilis
Q28469055	Natural biocombinatorics in the polyketide synthase genes of the actinobacterium Streptomyces avermitilis
Q33426371	Natural image coding in V1: how much use is orientation selectivity?
Q34281702	Natural isotopic signatures of variations in body nitrogen fluxes: a compartmental model analysis
Q96648786	Natural scene statistics predict how humans pool information across space in surface tilt estimation
Q21145371	Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes
Q28477323	Natural selection on functional modules, a genome-wide analysis
Q126007305	Natural variability in bee brain size and symmetry revealed by micro-CT imaging and deep learning
Q35034151	Natural, persistent oscillations in a spatial multi-strain disease system with application to dengue
Q89505428	Navigable maps of structural brain networks across species
Q36318548	Navigating in foldonia: Using accelerated molecular dynamics to explore stability, unfolding and self-healing of the β-solenoid structure formed by a silk-like polypeptide
Q30759763	Navigating the multilayered organization of eukaryotic signaling: a new trend in data integration
Q35160636	NbIT--a new information theory-based analysis of allosteric mechanisms reveals residues that underlie function in the leucine transporter LeuT.
Q36079871	Near Equilibrium Calculus of Stem Cells in Application to the Airway Epithelium Lineage
Q54210038	Near real-time forecasting for cholera decision making in Haiti after Hurricane Matthew.
Q113265279	Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data
Q34058067	Near-native protein loop sampling using nonparametric density estimation accommodating sparcity
Q91806144	Near-optimal combination of disparity across a log-polar scaled visual field
Q113308725	Near-term forecasting of companion animal tick paralysis incidence: An iterative ensemble model
Q52721162	Need for speed: An optimized gridding approach for spatially explicit disease simulations.
Q35186620	Negative example selection for protein function prediction: the NoGO database
Q113308561	Negative feedback may suppress variation to improve collective foraging performance
Q21145340	Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model
Q113309092	Neighbor-enhanced diffusivity in dense, cohesive cell populations
Q28550158	Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction
Q33543182	Neocortical axon arbors trade-off material and conduction delay conservation
Q38708733	NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis.
Q35838466	Network Events on Multiple Space and Time Scales in Cultured Neural Networks and in a Stochastic Rate Model
Q35834437	Network Plasticity as Bayesian Inference
Q30368269	Network Receptive Field Modeling Reveals Extensive Integration and Multi-feature Selectivity in Auditory Cortical Neurons
Q92982474	Network analyses to quantify effects of host movement in multilevel disease transmission models using foot and mouth disease in Cameroon as a case study
Q28541114	Network analysis of breast cancer progression and reversal using a tree-evolving network algorithm
Q33761237	Network analysis of global influenza spread
Q33347142	Network analysis of intrinsic functional brain connectivity in Alzheimer's disease
Q30353379	Network and atomistic simulations unveil the structural determinants of mutations linked to retinal diseases.
Q42375670	Network approaches and applications in biology
Q33886696	Network archaeology: uncovering ancient networks from present-day interactions
Q33954350	Network clustering revealed the systemic alterations of mitochondrial protein expression
Q30010152	Network evolution: rewiring and signatures of conservation in signaling
Q33366544	Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress
Q54111589	Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.
Q91596540	Network mechanisms and dysfunction within an integrated computational model of progression through mitosis in the human cell cycle
Q58761288	Network mechanisms underlying the role of oscillations in cognitive tasks
Q34130164	Network model of immune responses reveals key effectors to single and co-infection dynamics by a respiratory bacterium and a gastrointestinal helminth.
Q33549710	Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis
Q28477196	Network models of TEM β-lactamase mutations coevolving under antibiotic selection show modular structure and anticipate evolutionary trajectories
Q64056726	Network motifs and their origins
Q36319623	Network perturbation by recurrent regulatory variants in cancer
Q113309377	Network potential identifies therapeutic miRNA cocktails in Ewing sarcoma
Q42375668	Network propagation in the cytoscape cyberinfrastructure.
Q104791332	Network propagation of rare variants in Alzheimer's disease reveals tissue-specific hub genes and communities
Q113308393	Network resonance can be generated independently at distinct levels of neuronal organization
Q34539731	Network self-organization explains the statistics and dynamics of synaptic connection strengths in cortex
Q34998178	Network signatures of survival in glioblastoma multiforme
Q58797061	Network supporting contextual fear learning after dorsal hippocampal damage has increased dependence on retrosplenial cortex
Q34276989	Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells
Q90059883	Network trade-offs and homeostasis in Arabidopsis shoot architectures
Q31032861	Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer
Q35994811	Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package
Q35877153	Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis
Q34335485	Network-assisted investigation of combined causal signals from genome-wide association studies in schizophrenia
Q36390732	Network-assisted target identification for haploinsufficiency and homozygous profiling screens.
Q91089197	Network-based analysis of prostate cancer cell lines reveals novel marker gene candidates associated with radioresistance and patient relapse
Q28472755	Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets
Q34037645	Network-based prediction and analysis of HIV dependency factors
Q34649455	Network-based survival analysis reveals subnetwork signatures for predicting outcomes of ovarian cancer treatment
Q33523272	Network-free inference of knockout effects in yeast
Q64272230	Network-guided prediction of aromatase inhibitor response in breast cancer
Q58797064	Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials
Q33506609	Network-state modulation of power-law frequency-scaling in visual cortical neurons
Q113309180	Networks of Causal Linkage Between Eigenmodes Characterize Behavioral Dynamics of Caenorhabditis elegans
Q33747465	Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification.
Q113308585	Networks of necessity: Simulating COVID-19 mitigation strategies for disabled people and their caregivers
Q60453017	Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution
Q36182782	Neural Population Dynamics during Reaching Are Better Explained by a Dynamical System than Representational Tuning
Q35831886	Neural Sequence Generation Using Spatiotemporal Patterns of Inhibition
Q113238600	Neural circuit mechanisms of hierarchical sequence learning tested on large-scale recording data
Q44241865	Neural coding in the visual system of Drosophila melanogaster: How do small neural populations support visually guided behaviours?
Q33325889	Neural coding of natural stimuli: information at sub-millisecond resolution
Q34055212	Neural computation via neural geometry: a place code for inter-whisker timing in the barrel cortex?
Q64110277	Neural control of body-plan axis in regenerating planaria
Q93075075	Neural correlates of sparse coding and dimensionality reduction
Q64099416	Neural crest streaming as an emergent property of tissue interactions during morphogenesis
Q27334196	Neural development features: spatio-temporal development of the Caenorhabditis elegans neuronal network
Q103812434	Neural diffusivity and pre-emptive epileptic seizure intervention
Q34077623	Neural dynamics as sampling: a model for stochastic computation in recurrent networks of spiking neurons
Q44345416	Neural field model to reconcile structure with function in primary visual cortex
Q91089258	Neural field models for latent state inference: Application to large-scale neuronal recordings
Q101468885	Neural mass modeling of slow-fast dynamics of seizure initiation and abortion
Q28650493	Neural modularity helps organisms evolve to learn new skills without forgetting old skills
Q113308935	Neural network features distinguish chemosensory stimuli in Caenorhabditis elegans
Q34220917	Neural network mechanisms underlying stimulus driven variability reduction.
Q27316890	Neurally Encoding Time for Olfactory Navigation
Q113309185	Neurally-constrained modeling of human gaze strategies in a change blindness task
Q28471814	Neuraminidase inhibitor resistance in influenza: assessing the danger of its generation and spread
Q117046522	NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML
Q21145335	NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail
Q24810309	Neurobiological models of two-choice decision making can be reduced to a one-dimensional nonlinear diffusion equation
Q33932783	Neurobiologically realistic determinants of self-organized criticality in networks of spiking neurons
Q112303797	Neuroblastoma signalling models unveil combination therapies targeting feedback-mediated resistance
Q27319837	Neuroblastoma tyrosine kinase signaling networks involve FYN and LYN in endosomes and lipid rafts
Q113308975	Neurocomputational mechanism of controllability inference under a multi-agent setting
Q35833896	Neurogenesis drives stimulus decorrelation in a model of the olfactory bulb
Q89678898	Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies
Q30398658	Neuromechanistic Model of Auditory Bistability
Q36094735	Neuromotor Noise Is Malleable by Amplifying Perceived Errors
Q34037638	Neuromotor noise, error tolerance and velocity-dependent costs in skilled performance
Q113309287	Neuron tracing and quantitative analyses of dendritic architecture reveal symmetrical three-way-junctions and phenotypes of git-1 in C. elegans
Q38615206	Neuron's eye view: Inferring features of complex stimuli from neural responses
Q113309410	Neuronal Firing Sensitivity to Morphologic and Active Membrane Parameters
Q34649475	Neuronal avalanches differ from wakefulness to deep sleep--evidence from intracranial depth recordings in humans
Q33315557	Neuronal firing sensitivity to morphologic and active membrane parameters
Q34778458	Neuronal functional connection graphs among multiple areas of the rat somatosensory system during spontaneous and evoked activities.
Q51735027	Neuronal gain modulability is determined by dendritic morphology: A computational optogenetic study.
Q92277725	Neuronal population model of globular bushy cells covering unit-to-unit variability
Q35133535	Neuronal spike timing adaptation described with a fractional leaky integrate-and-fire model
Q27316250	Neuroprosthetic Decoder Training as Imitation Learning
Q35705552	Neutral Models of Microbiome Evolution
Q28756627	Neutrality and robustness in evo-devo: emergence of lateral inhibition
Q55647013	New Methods Section in PLOS Computational Biology.
Q52604626	New computational approaches to understanding molecular protein function.
Q100446289	New computational protein design methods for de novo small molecule binding sites
Q64064714	New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx
Q33553418	New insights into the genetic control of gene expression using a Bayesian multi-tissue approach
Q25256117	New maximum likelihood estimators for eukaryotic intron evolution
Q56888177	New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images
Q34845179	New universal rules of eukaryotic translation initiation fidelity
Q117886132	New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells
Q30717601	Next-generation sequence assembly: four stages of data processing and computational challenges
Q34468858	Next-generation sequencing of human mitochondrial reference genomes uncovers high heteroplasmy frequency
Q112295925	Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor
Q92123818	Nine quick tips for analyzing network data
Q97677995	Nine quick tips for efficient bioinformatics curriculum development and training
Q117012152	Nine quick tips for pathway enrichment analysis
Q28469111	Nitric oxide regulates input specificity of long-term depression and context dependence of cerebellar learning
Q34611084	No evidence for an item limit in change detection.
Q112557947	No increased circular inference in adults with high levels of autistic traits or autism
Q33857137	No need for a cognitive map: decentralized memory for insect navigation
Q91279805	No substantial change in the balance between model-free and model-based control via training on the two-step task
Q27321525	No, there is no 150 ms lead of visual speech on auditory speech, but a range of audiovisual asynchronies varying from small audio lead to large audio lag
Q35966317	Noise Expands the Response Range of the Bacillus subtilis Competence Circuit
Q27332097	Noise and robustness in phyllotaxis
Q27333733	Noise contributions in an inducible genetic switch: a whole-cell simulation study
Q38608141	Noise correlations in the human brain and their impact on pattern classification
Q28477391	Noise driven evolutionary waves
Q33375022	Noise during rest enables the exploration of the brain's dynamic repertoire
Q113309614	Noise induced Min phenotypes in E. coli
Q33504529	Noise management by molecular networks
Q113309412	Noise propagation and signaling sensitivity in biological networks: A role for positive feedback
Q33313488	Noise propagation and signaling sensitivity in biological networks: a role for positive feedback
Q56985328	Noise propagation in an integrated model of bacterial gene expression and growth
Q33366529	Noise reduction by diffusional dissipation in a minimal quorum sensing motif
Q34671650	Noise suppression and surplus synchrony by coincidence detection.
Q113309238	Noise suppression in stochastic genetic circuits using PID controllers
Q41106364	Noise, multisensory integration, and previous response in perceptual disambiguation
Q27339818	Noise-induced Min phenotypes in E. coli
Q27325501	Noise-invariant neurons in the avian auditory cortex: hearing the song in noise
Q92216184	Noise-precision tradeoff in predicting combinations of mutations and drugs
Q61800422	Noise-resistant developmental reproducibility in vertebrate somite formation
Q113309607	Non-Optimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems
Q34244854	Non-additive coupling enables propagation of synchronous spiking activity in purely random networks
Q33727971	Non-bulk-like solvent behavior in the ribosome exit tunnel
Q35836933	Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed by Comparative Modeling of Pathway Dynamics
Q96222846	Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats
Q33727959	Non-centered spike-triggered covariance analysis reveals neurotrophin-3 as a developmental regulator of receptive field properties of ON-OFF retinal ganglion cells
Q30388842	Non-degradative Ubiquitination of Protein Kinases.
Q91279776	Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture
Q100420401	Non-equilibrium landscape and flux reveal the stability-flexibility-energy tradeoff in working memory
Q35613895	Non-linear Membrane Properties in Entorhinal Cortical Stellate Cells Reduce Modulation of Input-Output Responses by Voltage Fluctuations
Q113308605	Non-linear archetypal analysis of single-cell RNA-seq data by deep autoencoders
Q47330751	Non-linear auto-regressive models for cross-frequency coupling in neural time series
Q21145343	Non-linear neuronal responses as an emergent property of afferent networks: a case study of the locust lobula giant movement detector
Q28550312	Non-monotonic Response to Monotonic Stimulus: Regulation of Glyoxylate Shunt Gene-Expression Dynamics in Mycobacterium tuberculosis
Q35920641	Non-monotonic Temporal-Weighting Indicates a Dynamically Modulated Evidence-Integration Mechanism
Q113308459	Non-monotonic effects of GABAergic synaptic inputs on neuronal firing
Q89876177	Non-ohmic tissue conduction in cardiac electrophysiology: Upscaling the non-linear voltage-dependent conductance of gap junctions
Q113308942	Non-synaptic interactions between olfactory receptor neurons, a possible key feature of odor processing in flies
Q92982370	Non-trophic interactions strengthen the diversity-functioning relationship in an ecological bioenergetic network model
Q95845402	Non-uniform distribution of myosin-mediated forces governs red blood cell membrane curvature through tension modulation
Q113308426	Non-zero mean alpha oscillations revealed with computational model and empirical data
Q36112842	Noncommutative Biology: Sequential Regulation of Complex Networks
Q35748969	Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes
Q28473666	Nonidentifiability of the source of intrinsic noise in gene expression from single-burst data
Q36149986	Nonlinear Hebbian Learning as a Unifying Principle in Receptive Field Formation
Q55031911	Nonlinear decoding of a complex movie from the mammalian retina.
Q108898691	Nonlinear effects of intrinsic dynamics on temporal encoding in a model of avian auditory cortex
Q21145332	Nonlinear gap junctions enable long-distance propagation of pulsating calcium waves in astrocyte networks
Q89759167	Nonlinear mixed selectivity supports reliable neural computation
Q33366581	Nonlinear muscles, passive viscoelasticity and body taper conspire to create neuromechanical phase lags in anguilliform swimmers
Q99568698	Nonlinear stimulus representations in neural circuits with approximate excitatory-inhibitory balance
Q113309289	Nonlinear visuoauditory integration in the mouse superior colliculus
Q27334886	Nonlinearity of mechanochemical motions in motor proteins
Q57101881	Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions
Q33354938	Nonnegative matrix factorization: an analytical and interpretive tool in computational biology
Q33250561	Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systems
Q113308567	Noradrenergic deficits contribute to apathy in Parkinson’s disease through the precision of expected outcomes
Q91223184	Norepinephrine stimulates glycogenolysis in astrocytes to fuel neurons with lactate
Q36230397	Normal Modes Expose Active Sites in Enzymes
Q33290222	Not all scale-free networks are born equal: the role of the seed graph in PPI network evolution
Q92967010	Notch signaling and taxis mechanisms regulate early stage angiogenesis: A mathematical and computational model
Q36058924	Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases
Q31134007	Novel Covariance-Based Neutrality Test of Time-Series Data Reveals Asymmetries in Ecological and Economic Systems
Q36233878	Novel Models of Visual Topographic Map Alignment in the Superior Colliculus
Q33290226	Novel algorithms reveal streptococcal transcriptomes and clues about undefined genes
Q28480452	Novel approach to meta-analysis of microarray datasets reveals muscle remodeling-related drug targets and biomarkers in Duchenne muscular dystrophy
Q91089454	Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences
Q34720242	Novel developmental analyses identify longitudinal patterns of early gut microbiota that affect infant growth
Q28542983	Novel inhibitors induce large conformational changes of GAB1 pleckstrin homology domain and kill breast cancer cells
Q112722577	Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studies
Q47294135	Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway.
Q36384987	Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile
Q27324087	Novel methods for analysing bacterial tracks reveal persistence in Rhodobacter sphaeroides
Q34531156	Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density
Q112570192	Novel mutation in hexokinase 2 confers resistance to 2-deoxyglucose by altering protein dynamics
Q36295154	Novel non-invasive algorithm to identify the origins of re-entry and ectopic foci in the atria from 64-lead ECGs: A computational study.
Q28473987	Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures
Q96222907	Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface
Q91596563	Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking
Q99411789	NuSeT: A deep learning tool for reliably separating and analyzing crowded cells
Q100508815	Nuclear plasticity increases susceptibility to damage during confined migration
Q113308430	NucleoMap: A computational tool for identifying nucleosomes in ultra-high resolution contact maps
Q34531199	Nucleoid-associated proteins affect mutation dynamics in E. coli in a growth phase-specific manner
Q36002014	Nucleosome Presence at AML-1 Binding Sites Inversely Correlates with Ly49 Expression: Revelations from an Informatics Analysis of Nucleosomes and Immune Cell Transcription Factors
Q34976936	Nucleosome free regions in yeast promoters result from competitive binding of transcription factors that interact with chromatin modifiers.
Q92966911	Nucleosome positioning sequence patterns as packing or regulatory
Q33842133	Nucleotide binding switches the information flow in ras GTPases
Q36359729	Nucleotide-time alignment for molecular recorders
Q38434954	NullSeq: A Tool for Generating Random Coding Sequences with Desired Amino Acid and GC Contents
Q28546825	Nullspace Sampling with Holonomic Constraints Reveals Molecular Mechanisms of Protein Gαs
Q34055236	Number and size distribution of colorectal adenomas under the multistage clonal expansion model of cancer
Q36222097	Numerical Approach to Spatial Deterministic-Stochastic Models Arising in Cell Biology
Q27334386	Numerical analysis of Ca2+ signaling in rat ventricular myocytes with realistic transverse-axial tubular geometry and inhibited sarcoplasmic reticulum
Q112722301	Numerical analysis of the impact of cytoskeletal actin filament density alterations onto the diffusive vesicle-mediated cell transport
Q113309202	Numerical approaches for the rapid analysis of prophylactic efficacy against HIV with arbitrary drug-dosing schemes
Q100739816	Numerical knockouts-In silico assessment of factors predisposing to thoracic aortic aneurysms
Q33533287	Numerical modelling of the V-J combinations of the T cell receptor TRA/TRD locus
Q30943969	Nutritional systems biology modeling: from molecular mechanisms to physiology
Q31172585	ODE constrained mixture modelling: a method for unraveling subpopulation structures and dynamics
Q28472140	ON/OFF and beyond--a boolean model of apoptosis
Q92914364	ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets
Q97093188	OSS-DBS: Open-source simulation platform for deep brain stimulation with a comprehensive automated modeling
Q45962141	Object detection through search with a foveated visual system.
Q113308701	Objective quantification of nerves in immunohistochemistry specimens of thyroid cancer utilising deep learning
Q113308939	Observable variations in human sex ratio at birth
Q113308635	Observing others give & take: A computational account of bystanders’ feelings and actions
Q33687049	Occurrence and treatment of bone atrophic non-unions investigated by an integrative approach
Q60304595	Odorant mixtures elicit less variable and faster responses than pure odorants
Q21092517	Of toasters and molecular ticker tapes
Q47122704	Olfactory coding in the turbulent realm
Q36412380	Olfactory learning without the mushroom bodies: Spiking neural network models of the honeybee lateral antennal lobe tract reveal its capacities in odour memory tasks of varied complexities
Q35940115	Oligomers of Heat-Shock Proteins: Structures That Don't Imply Function.
Q36114345	On Expression Patterns and Developmental Origin of Human Brain Regions
Q113309626	On Modeling HIV and T-Cells In Vivo: Assessing Causal Estimators in Vaccine Trials
Q34229585	On conduction in a bacterial sodium channel
Q34407735	On genetic specificity in symbiont-mediated host-parasite coevolution
Q61817296	On identifying collective displacements in apo-proteins that reveal eventual binding pathways
Q90305692	On measuring selection in cancer from subclonal mutation frequencies
Q33247446	On modeling HIV and T cells in vivo: assessing causal estimators in vaccine trials
Q21145673	On side-chain conformational entropy of proteins
Q113309474	On state-space reduction in multi-strain pathogen models, with an application to antigenic drift in influenza A
Q33294651	On state-space reduction in multi-strain pathogen models, with an application to antigenic drift in influenza A.
Q113309336	On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading
Q35834522	On the Adjacency Matrix of RyR2 Cluster Structures
Q104607085	On the NF-Y regulome as in ENCODE (2019)
Q35920767	On the Origins and Control of Community Types in the Human Microbiome
Q34167857	On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report
Q33495538	On the accessibility of adaptive phenotypes of a bacterial metabolic network
Q91762186	On the choice of metric in gradient-based theories of brain function
Q33553431	On the conservation of the slow conformational dynamics within the amino acid kinase family: NAGK the paradigm
Q34167818	On the effect of thermodynamic equilibrium on the assembly efficiency of complex multi-layered virus-like particles (VLP): the case of rotavirus VLP.
Q36384863	On the effects of alternative optima in context-specific metabolic model predictions
Q42412737	On the estimation of intron evolution
Q35181816	On the firing rate dependency of the phase response curve of rat Purkinje neurons in vitro.
Q33419811	On the growth of scientific knowledge: yeast biology as a case study
Q31129225	On the importance of polar interactions for complexes containing intrinsically disordered proteins
Q115020706	On the incongruence of genotype-phenotype and fitness landscapes
Q113309390	On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo
Q110650090	On the influence of prior information evaluated by fully Bayesian criteria in a personalized whole-brain model of epilepsy spread
Q21563488	On the inverse problem of binocular 3D motion perception
Q35582175	On the number of neurons and time scale of integration underlying the formation of percepts in the brain
Q108126722	On the open-source landscape of PLOS Computational Biology
Q92476094	On the optimal design of metabolic RNA labeling experiments
Q28477484	On the origin of DNA genomes: evolution of the division of labor between template and catalyst in model replicator systems
Q33778586	On the origins of suboptimality in human probabilistic inference
Q33761266	On the origins of the weak folding cooperativity of a designed ββα ultrafast protein FSD-1.
Q43043968	On the process of becoming a great scientist
Q30354782	On the role of aggregation prone regions in protein evolution, stability, and enzymatic catalysis: insights from diverse analyses.
Q54960322	On the role of extrinsic noise in microRNA-mediated bimodal gene expression.
Q55262537	On the role of sparseness in the evolution of modularity in gene regulatory networks.
Q104799584	On the role of transcription in positioning nucleosomes
Q36289471	On the stability and dynamics of stochastic spiking neuron models: Nonlinear Hawkes process and point process GLMs.
Q33880793	On the use of human mobility proxies for modeling epidemics
Q33576709	On the zwitterionic nature of gas-phase peptides and protein ions
Q60933619	On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model
Q36351953	Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples
Q35743902	One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies
Q112298733	One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads
Q33654178	One rule to grow them all: a general theory of neuronal branching and its practical application
Q60471884	One thousand simple rules
Q60538879	One year of PLoS Computational Biology
Q113308853	One-carbon metabolism during the menstrual cycle and pregnancy
Q21563503	Open access: taking full advantage of the content
Q66680702	Open collaborative writing with Manubot
Q108127202	OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing
Q112313348	OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations
Q61813738	OpenCASA: A new open-source and scalable tool for sperm quality analysis
Q30845743	OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis
Q41327186	OpenMM 7: Rapid development of high performance algorithms for molecular dynamics.
Q104607078	OpenSim Moco: Musculoskeletal optimal control
Q90498253	OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement
Q113309427	Operating Regimes of Signaling Cycles: Statics, Dynamics, and Noise Filtering
Q28472165	Operating regimes of signaling cycles: statics, dynamics, and noise filtering
Q35869546	Operational Principles for the Dynamics of the In Vitro ParA-ParB System
Q113265283	Operational response simulation tool for epidemics within refugee and IDP settlements: A scenario-based case study of the Cox’s Bazar settlement
Q113308838	OperonSEQer: A set of machine-learning algorithms with threshold voting for detection of operon pairs using short-read RNA-sequencing data
Q89547384	Opponent processes in visual memories: A model of attraction and repulsion in navigating insects' mushroom bodies
Q34154442	OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities
Q21145339	OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions
Q58699982	OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli
Q64117653	OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling
Q113309231	Optima TB: A tool to help optimally allocate tuberculosis spending
Q40987150	Optimal Current Transfer in Dendrites
Q30390224	Optimal Information Representation and Criticality in an Adaptive Sensory Recurrent Neuronal Network
Q28552473	Optimal Population-Level Infection Detection Strategies for Malaria Control and Elimination in a Spatial Model of Malaria Transmission
Q30405259	Optimal Prediction of Moving Sound Source Direction in the Owl.
Q36263769	Optimal Sequential Immunization Can Focus Antibody Responses against Diversity Loss and Distraction
Q28547109	Optimal Treatment Strategies in the Context of 'Treatment for Prevention' against HIV-1 in Resource-Poor Settings
Q104607108	Optimal adjustment of the human circadian clock in the real world
Q113746373	Optimal anti-amyloid-beta therapy for Alzheimer’s disease via a personalized mathematical model
Q34671661	Optimal balance of the striatal medium spiny neuron network
Q34046383	Optimal behavioral hierarchy
Q35597266	Optimal census by quorum sensing
Q113309211	Optimal closed-loop deep brain stimulation using multiple independently controlled contacts
Q33354931	Optimal compensation for temporal uncertainty in movement planning
Q27331110	Optimal control of saccades by spatial-temporal activity patterns in the monkey superior colliculus
Q113308448	Optimal control of the spatial allocation of COVID-19 vaccines: Italy as a case study
Q33474869	Optimal control predicts human performance on objects with internal degrees of freedom
Q28474170	Optimal drug synergy in antimicrobial treatments
Q52315631	Optimal dynamic control approach in a multi-objective therapeutic scenario: Application to drug delivery in the treatment of prostate cancer.
Q34844944	Optimal dynamics for quality control in spatially distributed mitochondrial networks
Q27335259	Optimal experimental design for parameter estimation of a cell signaling model
Q100561199	Optimal forgetting: Semantic compression of episodic memories
Q113308847	Optimal immune specificity at the intersection of host life history and parasite epidemiology
Q33700666	Optimal information transfer in the cortex through synchronization.
Q33388190	Optimal learning rules for discrete synapses
Q104607109	Optimal learning with excitatory and inhibitory synapses
Q58764582	Optimal multi-source forecasting of seasonal influenza
Q113309570	Optimal noise filtering in the chemotactic response of E. coli
Q28469071	Optimal noise filtering in the chemotactic response of Escherichia coli
Q46237365	Optimal number of spacers in CRISPR arrays
Q46384834	Optimal occlusion uniformly partitions red blood cells fluxes within a microvascular network.
Q34597906	Optimal properties of analog perceptrons with excitatory weights
Q35195419	Optimal reaction coordinate as a biomarker for the dynamics of recovery from kidney transplant
Q35105587	Optimal recall from bounded metaplastic synapses: predicting functional adaptations in hippocampal area CA3.
Q33811726	Optimal sampling strategies for detecting zoonotic disease epidemics
Q21563471	Optimal schedules of light exposure for rapidly correcting circadian misalignment
Q35082158	Optimal screening strategies for healthcare associated infections in a multi-institutional setting
Q35097094	Optimal serotype compositions for Pneumococcal conjugate vaccination under serotype replacement
Q33961354	Optimal stimulus shapes for neuronal excitation
Q41007801	Optimal structure of metaplasticity for adaptive learning.
Q47105723	Optimal synaptic signaling connectome for locomotory behavior in Caenorhabditis elegans: Design minimizing energy cost
Q28469250	Optimal timing and duration of induction therapy for HIV-1 infection
Q123594743	Optimal timing of one-shot interventions for epidemic control
Q113309076	Optimal transport analysis reveals trajectories in steady-state systems
Q104791433	Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data
Q113308861	Optimal vaccine allocation for COVID-19 in the Netherlands: A data-driven prioritization
Q30428994	Optimal vaccine allocation for the early mitigation of pandemic influenza
Q33598539	Optimal workloop energetics of muscle-actuated systems: an impedance matching view
Q37308667	Optimality conditions for cell-fate heterogeneity that maximize the effects of growth factors in PC12 cells
Q34288734	Optimality of human contour integration
Q33598442	Optimality of mutation and selection in germinal centers
Q89505476	Optimality of sparse olfactory representations is not affected by network plasticity
Q36284025	Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism
Q100457198	Optimising age coverage of seasonal influenza vaccination in England: A mathematical and health economic evaluation
Q35601506	Optimising and communicating options for the control of invasive plant disease when there is epidemiological uncertainty
Q98193528	Optimising efficacy of antibiotics against systemic infection by varying dosage quantities and times
Q113308902	Optimism and pessimism in optimised replay
Q33650010	Optimism as a prior belief about the probability of future reward
Q34236572	Optimization of muscle activity for task-level goals predicts complex changes in limb forces across biomechanical contexts
Q93045907	Optimization of surgical intervention outside the epileptogenic zone in the Virtual Epileptic Patient (VEP)
Q28552787	Optimized Treatment Schedules for Chronic Myeloid Leukemia
Q92815761	Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces
Q92966921	Optimizing circadian drug infusion schedules towards personalized cancer chronotherapy
Q113308640	Optimizing clinical dosing of combination broadly neutralizing antibodies for HIV prevention
Q21145318	Optimizing experimental design for comparing models of brain function
Q49980891	Optimizing homeostatic cell renewal in hierarchical tissues.
Q113308687	Optimizing interneuron circuits for compartment-specific feedback inhibition
Q35182053	Optimizing metabolite production using periodic oscillations
Q33526235	Optimizing metapopulation sustainability through a checkerboard strategy
Q113309301	Optimizing network propagation for multi-omics data integration
Q34236593	Optimizing provider recruitment for influenza surveillance networks
Q90123454	Optimizing spatial allocation of seasonal influenza vaccine under temporal constraints
Q125356177	Optimizing strategies for slowing the spread of invasive species
Q113309313	Optimizing testing for COVID-19 in India
Q92078255	Optimizing the deployment of ultra-low volume and indoor residual spraying for dengue outbreak response
Q64105005	Optimizing the depth and the direction of prospective planning using information values
Q55318467	Optimizing the learning rate for adaptive estimation of neural encoding models.
Q36258674	Optogenetic Stimulation Shifts the Excitability of Cerebral Cortex from Type I to Type II: Oscillation Onset and Wave Propagation
Q89547369	Orbit Image Analysis: An open-source whole slide image analysis tool
Q113308491	Orchestrated neuronal migration and cortical folding: A computational and experimental study
Q112639346	Orchestrating privacy-protected big data analyses of data from different resources with R and DataSHIELD
Q36199624	Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference
Q33521254	Order and stochastic dynamics in Drosophila planar cell polarity
Q98383991	Order matters: How covert value updating during sequential option sampling shapes economic preference
Q24643424	Order-based representation in random networks of cortical neurons
Q28535193	Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria
Q31131695	Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data
Q33640100	Organization of cellular receptors into a nanoscale junction during HIV-1 adhesion
Q33372128	Organization of excitable dynamics in hierarchical biological networks
Q33379070	Organization of physical interactomes as uncovered by network schemas
Q55037923	Organization of the core respiratory network: Insights from optogenetic and modeling studies.
Q103828819	Orientation processing by synaptic integration across first-order tactile neurons
Q34875725	Orientation selectivity in inhibition-dominated networks of spiking neurons: effect of single neuron properties and network dynamics
Q113309328	Origami: Single-cell 3D shape dynamics oriented along the apico-basal axis of folding epithelia from fluorescence microscopy data
Q34649562	Origin and evolution of protein fold designs inferred from phylogenomic analysis of CATH domain structures in proteomes
Q55303076	Origins of scale invariance in vocalization sequences and speech.
Q28485154	Oroxylin A inhibits hemolysis via hindering the self-assembly of α-hemolysin heptameric transmembrane pore
Q33298403	Orthologous transcription factors in bacteria have different functions and regulate different genes
Q35517320	Oscillation-induced signal transmission and gating in neural circuits
Q59810717	Oscillations in working memory and neural binding: A mechanism for multiple memories and their interactions
Q35990929	Oscillations via Spike-Timing Dependent Plasticity in a Feed-Forward Model
Q113308649	Oscillator decomposition of infant fNIRS data
Q113309596	Oscillatory Regulation of Hes1: Discrete Stochastic Delay Modelling and Simulation
Q21145678	Oscillatory regulation of Hes1: Discrete stochastic delay modelling and simulation
Q27329714	Osteoprotegerin in bone metastases: mathematical solution to the puzzle
Q113265282	OutbreakFlow: Model-based Bayesian inference of disease outbreak dynamics with invertible neural networks and its application to the COVID-19 pandemics in Germany
Q30455687	Outlier responses reflect sensitivity to statistical structure in the human brain
Q30397955	Outlook on Thailand's genomics and computational biology research and development
Q35091205	Overexpression of heat shock protein 72 attenuates NF-κB activation using a combination of regulatory mechanisms in microglia
Q104741506	Overlaid positive and negative feedback loops shape dynamical properties of PhoPQ two-component system
Q92205039	Overlap matrix completion for predicting drug-associated indications
Q33517622	Oxidized calmodulin kinase II regulates conduction following myocardial infarction: a computational analysis
Q35827458	Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach
Q28540825	P-loop conformation governed crizotinib resistance in G2032R-mutated ROS1 tyrosine kinase: clues from free energy landscape
Q61818316	PAIRUP-MS: Pathway analysis and imputation to relate unknowns in profiles from mass spectrometry-based metabolite data
Q36322043	PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction
Q38651621	PCSF: An R-package for network-based interpretation of high-throughput data.
Q108126915	PDKit: A data science toolkit for the digital assessment of Parkinson's Disease
Q36029447	PEPIS: A Pipeline for Estimating Epistatic Effects in Quantitative Trait Locus Mapping and Genome-Wide Association Studies.
Q33293153	PERIOD-TIMELESS interval timer may require an additional feedback loop
Q34531191	PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions
Q41876050	PEX5 and ubiquitin dynamics on mammalian peroxisome membranes
Q35808812	PF2fit: Polar Fast Fourier Matched Alignment of Atomistic Structures with 3D Electron Microscopy Maps
Q112611184	PHENSIM: Phenotype Simulator
Q60550684	PLOS Computational Biology 2014 Reviewer Thank You
Q60550731	PLOS Computational Biology 2015 Reviewer Thank You
Q60550750	PLOS Computational Biology 2016 Reviewer and Editorial Board Thank You
Q64097222	PLOS Computational Biology 2018 Reviewer and Editorial Board Thank You
Q113308668	PLUS: Predicting cancer metastasis potential based on positive and unlabeled learning
Q34085584	PLoS Computational Biology Conference Postcards from ISMB/ECCB 2011.
Q113309687	PLoS Computational Biology Issue Image \| Vol. 1(9) October 2021
Q113309686	PLoS Computational Biology Issue Image \| Vol. 17(9) October 2021
Q56908353	PLoS Computational Biology Issue Image \| Vol. 4(12) December 2008
Q55878702	PLoS Computational Biology Issue Image \| Vol. 6(8) August 2010
Q33869021	PLoS Computational Biology conference postcard from PSB 2011.
Q33750114	PLoS Computational Biology conference postcards from ISMB 2010
Q42803696	PLoS Computational Biology conference postcards from PSB 2010.
Q24811450	PLoS Computational Biology: a new community journal
Q112610335	POMAShiny: A user-friendly web-based workflow for metabolomics and proteomics data analysis
Q28469153	PPARalpha siRNA-treated expression profiles uncover the causal sufficiency network for compound-induced liver hypertrophy
Q113309537	PPARα siRNA-Treated Expression Profiles Uncover the Causal Sufficiency Network for Compound-Induced Liver Hypertrophy
Q112609216	PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions
Q101221551	PPM-Decay: A computational model of auditory prediction with memory decay
Q90458687	PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Q92697442	PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks
Q30903275	PRIMAL: Fast and accurate pedigree-based imputation from sequence data in a founder population
Q35909423	PSAMM: A Portable System for the Analysis of Metabolic Models
Q42066309	PSICIC: noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution
Q27321097	PTEN hopping on the cell membrane is regulated via a positively-charged C2 domain
Q30653367	PUMA: a unified framework for penalized multiple regression analysis of GWAS data
Q113309342	PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes
Q113308700	Packaging contests between viral RNA molecules and kinetic selectivity
Q36247421	Pain: A Statistical Account
Q100457209	Paired fruit flies synchronize behavior: Uncovering social interactions in Drosophila melanogaster
Q113308578	Pairing statistics and melting of random DNA oligomers: Finding your partner in superdiverse environments
Q34597883	Pairwise analysis can account for network structures arising from spike-timing dependent plasticity
Q37172866	Pairwise maximum entropy models for studying large biological systems: when they can work and when they can't
Q63979683	Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome
Q93011718	PanoView: An iterative clustering method for single-cell RNA sequencing data
Q34167851	Paradoxical evidence integration in rapid decision processes
Q109040144	Paradoxical phase response of gamma rhythms facilitates their entrainment in heterogeneous networks
Q113308878	Paradoxical relationship between speed and accuracy in olfactory figure-background segregation
Q35830718	Parallel Representation of Value-Based and Finite State-Based Strategies in the Ventral and Dorsal Striatum
Q90159803	Parallel Tempering with Lasso for model reduction in systems biology
Q33502744	Parallel computational subunits in dentate granule cells generate multiple place fields
Q64974118	Parameter estimation and identifiability in a neural population model for electro-cortical activity.
Q33539735	Parameter estimation and model selection in computational biology
Q36306122	Parameter estimation for multistage clonal expansion models from cancer incidence data: A practical identifiability analysis
Q28484447	Parameter identifiability and sensitivity analysis predict targets for enhancement of STAT1 activity in pancreatic cancer and stellate cells
Q112556145	Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level
Q28535030	Parameter trajectory analysis to identify treatment effects of pharmacological interventions
Q55129455	Parameter uncertainty quantification using surrogate models applied to a spatial model of yeast mating polarization.
Q108126914	Parameters and determinants of responses to selection in antibody libraries
Q34229563	Parameters in dynamic models of complex traits are containers of missing heritability.
Q113308795	Parametric Copula-GP model for analyzing multidimensional neuronal and behavioral relationships
Q30477445	Parametric alignment of Drosophila genomes
Q113309620	Parametric alignment of Drosophila genomes
Q112577125	Paranoia, self-deception and overconfidence
Q27316386	Parasites Sustain and Enhance RNA-Like Replicators through Spatial Self-Organisation
Q35822891	Parsimonious Model of Vascular Patterning Links Transverse Hormone Fluxes to Lateral Root Initiation: Auxin Leads the Way, while Cytokinin Levels Out.
Q30471421	Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana
Q35846958	Parsimony, Exhaustivity and Balanced Detection in Neocortex
Q35742547	Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations
Q113309279	Partial information decomposition reveals that synergistic neural integration is greater downstream of recurrent information flow in organotypic cortical cultures
Q33400325	Partial order optimum likelihood (POOL): maximum likelihood prediction of protein active site residues using 3D Structure and sequence properties
Q33954358	Partially glycosylated dendrimers block MD-2 and prevent TLR4-MD-2-LPS complex mediated cytokine responses
Q35653871	Particle Simulation of Oxidation Induced Band 3 Clustering in Human Erythrocytes.
Q52382414	Particle-based simulations of polarity establishment reveal stochastic promotion of Turing pattern formation.
Q98719713	Partitioning stable and unstable expression level variation in cell populations: A theoretical framework and its application to the T cell receptor
Q111320139	Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders
Q64114693	Passenger mutations accurately classify human tumors
Q34611031	Passive dendrites enable single neurons to compute linearly non-separable functions
Q28550431	Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways
Q94606240	Path integration in large-scale space and with novel geometries: Comparing vector addition and encoding-error models
Q60305734	PathFX provides mechanistic insights into drug efficacy and safety for regulatory review and therapeutic development
Q126509853	PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration
Q25296662	PathVisio 3: an extendable pathway analysis toolbox
Q92751178	Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome
Q113309465	Pathway Switching Explains the Sharp Response Characteristic of Hypoxia Response Network
Q111803756	Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis
Q33921210	Pathway analysis of expression data: deciphering functional building blocks of complex diseases
Q33296881	Pathway switching explains the sharp response characteristic of hypoxia response network
Q35105583	Pathway thermodynamics highlights kinetic obstacles in central metabolism
Q28550614	Pathway-Based Genomics Prediction using Generalized Elastic Net
Q28534533	Pathway-based screening strategy for multitarget inhibitors of diverse proteins in metabolic pathways
Q64986488	Pathway-specific protein domains are predictive for human diseases.
Q90770107	Patient Dossier: Healthcare queries over distributed resources
Q113308734	Patient contrastive learning: A performant, expressive, and practical approach to electrocardiogram modeling
Q33545209	Patient referral patterns and the spread of hospital-acquired infections through national health care networks.
Q34058053	Patient-specific data fusion defines prognostic cancer subtypes
Q30843061	Patient-specific modeling of individual sickle cell behavior under transient hypoxia.
Q58739180	Patient-specific pulse wave propagation model identifies cardiovascular risk characteristics in hemodialysis patients
Q34504763	Pattern of tick aggregation on mice: larger than expected distribution tail enhances the spread of tick-borne pathogens
Q28748174	Pattern recognition software and techniques for biological image analysis
Q60054364	Patterning the insect eye: From stochastic to deterministic mechanisms
Q33649755	Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems
Q27339393	Patterns of mesenchymal condensation in a multiscale, discrete stochastic model
Q113309511	Patterns of mesenchymal condensation in a multiscale, discrete stochastic model
Q34778435	Patterns of proliferative activity in the colonic crypt determine crypt stability and rates of somatic evolution
Q33628842	Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli
Q33552922	Paving the way towards a successful and fulfilling career in computational biology
Q33691409	Pavlovian-instrumental interaction in 'observing behavior'.
Q89430427	Paxillin phosphorylation at serine 273 and its effects on Rac, Rho and adhesion dynamics
Q94553066	PenDA, a rank-based method for personalized differential analysis: Application to lung cancer
Q100406788	Penalized regression and model selection methods for polygenic scores on summary statistics
Q35238281	Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products
Q33562598	Peptide probes derived from pertuzumab by molecular dynamics modeling for HER2 positive tumor imaging
Q92072538	Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data
Q35945014	Perceptual learning via modification of cortical top-down signals
Q33329089	Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes
Q112690449	Performance and scaling behavior of bioinformatic applications in virtualization environments to create awareness for the efficient use of compute resources
Q34413598	Performance limitations of relay neurons
Q60309403	Performance of convolutional neural networks for identification of bacteria in 3D microscopy datasets
Q113308666	Performance of early warning signals for disease re-emergence: A case study on COVID-19 data
Q90303496	Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity
Q113308565	Performance-gated deliberation: A context-adapted strategy in which urgency is opportunity cost
Q35814325	Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping.
Q27316588	Persistence and Adaptation in Immunity: T Cells Balance the Extent and Thoroughness of Search
Q35914469	Persistent Chaos of Measles Epidemics in the Prevaccination United States Caused by a Small Change in Seasonal Transmission Patterns.
Q33275290	Persistent activity in neural networks with dynamic synapses
Q104799587	Persistent thermal input controls steering behavior in Caenorhabditis elegans
Q33879504	Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires
Q34244876	Persisting viral sequences shape microbial CRISPR-based immunity
Q112578425	Personalized brain stimulation for effective neurointervention across participants
Q30000267	Personalized glucose forecasting for type 2 diabetes using data assimilation
Q108126730	Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers
Q113308703	Personalized pathology test for Cardio-vascular disease: Approximate Bayesian computation with discriminative summary statistics learning
Q54966821	Personalizing physical exercise in a computational model of fuel homeostasis.
Q90076564	Perspective: Dimensions of the scientific method
Q113308977	Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data
Q97550415	Perturbation biology links temporal protein changes to drug responses in a melanoma cell line
Q28537769	Perturbation biology: inferring signaling networks in cellular systems
Q27335329	Perturbation-based Markovian transmission model for probing allosteric dynamics of large macromolecular assembling: a study of GroEL-GroES
Q27319690	Perturbation-expression analysis identifies RUNX1 as a regulator of human mammary stem cell differentiation
Q41889422	Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein
Q113309310	Perturbations in dynamical models of whole-brain activity dissociate between the level and stability of consciousness
Q64981420	Perturbing low dimensional activity manifolds in spiking neuronal networks.
Q36055368	Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities.
Q101154897	PhANNs, a fast and accurate tool and web server to classify phage structural proteins
Q28477067	Pharmacodynamic modeling of anti-cancer activity of tetraiodothyroacetic acid in a perfused cell culture system
Q42370260	Phase changes in neuronal postsynaptic spiking due to short term plasticity
Q28485366	Phase resetting reveals network dynamics underlying a bacterial cell cycle
Q27321061	Phase transitions in the multi-cellular regulatory behavior of pancreatic islet excitability
Q35212339	Phase-coherence transitions and communication in the gamma range between delay-coupled neuronal populations
Q89498450	Phase-lags in large scale brain synchronization: Methodological considerations and in-silico analysis
Q27334224	Phase-locked signals elucidate circuit architecture of an oscillatory pathway
Q113309165	Phase-locking patterns underlying effective communication in exact firing rate models of neural networks
Q36077713	Phasic Burst Stimulation: A Closed-Loop Approach to Tuning Deep Brain Stimulation Parameters for Parkinson's Disease
Q34456065	Phasic firing in vasopressin cells: understanding its functional significance through computational models
Q28537969	Phenome-wide association studies on a quantitative trait: application to TPMT enzyme activity and thiopurine therapy in pharmacogenomics
Q34468915	Phenomenological model for predicting the catabolic potential of an arbitrary nutrient
Q89830565	Phenotype-based probabilistic analysis of heterogeneous responses to cancer drugs and their combination efficacy
Q103744827	Phenotypes to remember: Evolutionary developmental memory capacity and robustness
Q35928486	Phenotypic Heterogeneity and the Evolution of Bacterial Life Cycles
Q113309450	Phenotypic Mutation Rates and the Abundance of Abnormal Proteins in Yeast
Q95943033	Phenotypic delay in the evolution of bacterial antibiotic resistance: Mechanistic models and their implications
Q64988690	Phenotypic heterogeneity and evolution of melanoma cells associated with targeted therapy resistance.
Q33307180	Phenotypic mutation rates and the abundance of abnormal proteins in yeast
Q125289908	Phenotypic pliancy and the breakdown of epigenetic polycomb mechanisms
Q35224364	Phenotypic robustness and the assortativity signature of human transcription factor networks
Q35220962	Phenotypic signatures arising from unbalanced bacterial growth
Q113309108	Phenotypic-dependent variability and the emergence of tolerance in bacterial populations
Q35378297	Phosphate sink containing two-component signaling systems as tunable threshold devices
Q28534913	Phosphorelays provide tunable signal processing capabilities for the cell
Q27320529	Phosphorylation by PINK1 releases the UBL domain and initializes the conformational opening of the E3 ubiquitin ligase Parkin
Q28478076	Phosphorylation of the Arp2 subunit relieves auto-inhibitory interactions for Arp2/3 complex activation
Q34699661	Phosphorylation of the retinoic acid receptor alpha induces a mechanical allosteric regulation and changes in internal dynamics
Q30426027	Phosphorylation variation during the cell cycle scales with structural propensities of proteins
Q100406784	PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors
Q33809343	PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data.
Q34544393	Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships
Q28553329	PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories
Q33366585	PhyloGibbs-MP: module prediction and discriminative motif-finding by Gibbs sampling
Q57234278	PhyloGibbs: A Gibbs Sampling Motif Finder that Incorporates Phylogeny
Q21145693	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
Q34539700	Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study
Q35152000	Phylodynamic inference for structured epidemiological models
Q36325542	Phylodynamics on local sexual contact networks
Q36050500	Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved
Q37487949	Phylogenetic Gaussian process model for the inference of functionally important regions in protein tertiary structures
Q113308716	Phylogenetic analysis of migration, differentiation, and class switching in B cells
Q33400327	Phylogenetic and functional assessment of orthologs inference projects and methods
Q90694220	Phylogenetic correlations can suffice to infer protein partners from sequences
Q33385995	Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag.
Q34531166	Phylogenetic diversity theory sheds light on the structure of microbial communities
Q113308720	Phylogenetic inference of changes in amino acid propensities with single-position resolution
Q28537974	Phylogenetic quantification of intra-tumour heterogeneity
Q115175616	Phylogenetic reconciliation
Q33258810	Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human
Q64102754	Phylogenies from dynamic networks
Q36059871	Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer
Q58794476	Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
Q89594431	Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic
Q52688323	PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems.
Q64060962	Physical constraints on accuracy and persistence during breast cancer cell chemotaxis
Q114872737	Physicochemical and metabolic constraints for thermodynamics-based stoichiometric modelling under mesophilic growth conditions
Q113308952	Physics-based modeling provides predictive understanding of selectively promiscuous substrate binding by Hsp70 chaperones
Q54997026	Physics-based simulations of aerial attacks by peregrine falcons reveal that stooping at high speed maximizes catch success against agile prey.
Q47243234	Physiological models of the lateral superior olive
Q35576967	Physiology of layer 5 pyramidal neurons in mouse primary visual cortex: coincidence detection through bursting
Q35191330	Pierced Lasso Bundles are a new class of knot-like motifs
Q35182357	Place cell rate remapping by CA3 recurrent collaterals
Q30496624	Plant classification from bat-like echolocation signals
Q91533205	PlasClass improves plasmid sequence classification
Q33700519	Plasmodium falciparum erythrocyte membrane protein 1 diversity in seven genomes--divide and conquer
Q35920530	Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-random Features of Cortical Synaptic Wiring
Q28474678	Plato's cave algorithm: inferring functional signaling networks from early gene expression shadows
Q35755889	Pluripotency, Differentiation, and Reprogramming: A Gene Expression Dynamics Model with Epigenetic Feedback Regulation
Q36189767	PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases
Q34013585	Podbat: a novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic meta-analysis
Q47403708	Point process analysis of noise in early invertebrate vision
Q113309303	Point-estimating observer models for latent cause detection
Q102215352	Poisson balanced spiking networks
Q33404057	Poisson-Nernst-Planck models of nonequilibrium ion electrodiffusion through a protegrin transmembrane pore
Q35208056	Poisson-like spiking in circuits with probabilistic synapses
Q33384410	Polar or apolar--the role of polarity for urea-induced protein denaturation
Q33604854	Polarizable water model for the coarse-grained MARTINI force field
Q33570920	Polarization and migration in the zebrafish posterior lateral line system
Q34625320	Policy resistance undermines superspreader vaccination strategies for influenza
Q101348931	Poly(A)-DG: A deep-learning-based domain generalization method to identify cross-species Poly(A) signal without prior knowledge from target species
Q35200769	PolyUbiquitin chain linkage topology selects the functions from the underlying binding landscape
Q33396960	Polyamine sharing between tubulin dimers favours microtubule nucleation and elongation via facilitated diffusion
Q35004442	Polycation-π interactions are a driving force for molecular recognition by an intrinsically disordered oncoprotein family
Q33818809	Polyglutamine induced misfolding of huntingtin exon1 is modulated by the flanking sequences
Q41577865	Polymodal allosteric regulation of Type 1 Serine/Threonine Kinase Receptors via a conserved electrostatic lock
Q55263078	Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins.
Q33434443	Polymorphism data can reveal the origin of species abundance statistics
Q28488158	Polymorphisms in the F8 gene and MHC-II variants as risk factors for the development of inhibitory anti-factor VIII antibodies during the treatment of hemophilia a: a computational assessment
Q113308794	Polypolish: Short-read polishing of long-read bacterial genome assemblies
Q113308637	Pooled testing of traced contacts under superspreading dynamics
Q113308428	Pooling strategies in V1 can account for the functional and structural diversity across species
Q28552830	Population Density Modulates Drug Inhibition and Gives Rise to Potential Bistability of Treatment Outcomes for Bacterial Infections
Q42369662	Population FBA predicts metabolic phenotypes in yeast.
Q36233870	Population Heterogeneity in the Epithelial to Mesenchymal Transition Is Controlled by NFAT and Phosphorylated Sp1.
Q35082164	Population decoding in rat barrel cortex: optimizing the linear readout of correlated population responses
Q64261418	Population dynamics and entrainment of basal ganglia pacemakers are shaped by their dendritic arbors
Q51145460	Population dynamics of engineered underdominance and killer-rescue gene drives in the control of disease vectors.
Q89876231	Population modeling of tumor growth curves and the reduced Gompertz model improve prediction of the age of experimental tumors
Q97093000	Population structure across scales facilitates coexistence and spatial heterogeneity of antibiotic-resistant infections
Q33518474	Population structure induces a symmetry breaking favoring the emergence of cooperation
Q104139271	Population variability in the generation and selection of T-cell repertoires
Q50421163	Population-specific design of de-immunized protein biotherapeutics.
Q53823195	Porcupine: A visual pipeline tool for neuroimaging analysis.
Q35884094	Pore Structure and Synergy in Antimicrobial Peptides of the Magainin Family
Q33483326	PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure
Q111150163	Positional SHAP (PoSHAP) for Interpretation of machine learning models trained from biological sequences
Q34565830	Positional bias of MHC class I restricted T-cell epitopes in viral antigens is likely due to a bias in conservation
Q33419848	Positional information generated by spatially distributed signaling cascades.
Q33279808	Positive and negative design in stability and thermal adaptation of natural proteins
Q113309530	Positive and negative design in stability and thermal adaptation of natural proteins
Q34154430	Positive evolutionary selection of an HD motif on Alzheimer precursor protein orthologues suggests a functional role
Q112289670	Positive interactions within and between populations decrease the likelihood of evolutionary rescue
Q33242801	Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome
Q34625264	Positively selected sites in cetacean myoglobins contribute to protein stability
Q34104455	Possible role of interleukin-1β in type 2 diabetes onset and implications for anti-inflammatory therapy strategies
Q41293929	Possible roles of mechanical cell elimination intrinsic to growing tissues from the perspective of tissue growth efficiency and homeostasis
Q64992166	Post-Turing tissue pattern formation: Advent of mechanochemistry.
Q34556346	Post-transcriptional regulation across human tissues
Q27318520	Posterior Probability Matching and Human Perceptual Decision Making
Q34325450	Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
Q33279809	Posttranscriptional expression regulation: what determines translation rates?
Q55128562	Potassium and sodium microdomains in thin astroglial processes: A computational model study.
Q28480573	Potassium starvation in yeast: mechanisms of homeostasis revealed by mathematical modeling
Q113309522	Potential Energy Landscape and Robustness of A Gene Regulatory Network: Toggle Switch
Q27320048	Potential benefits of cattle vaccination as a supplementary control for bovine tuberculosis
Q33280627	Potential energy landscape and robustness of a gene regulatory network: toggle switch
Q28533397	Potential role of a bistable histidine kinase switch in the asymmetric division cycle of Caulobacter crescentus
Q35587243	Power Law Scaling in Human and Empty Room MEG Recordings.
Q30488083	Power efficiency of outer hair cell somatic electromotility
Q35526762	Power laws for heavy-tailed distributions: modeling allele and haplotype diversity for the national marrow donor program
Q35417100	Power laws from linear neuronal cable theory: power spectral densities of the soma potential, soma membrane current and single-neuron contribution to the EEG.
Q35944200	Power-Law Dynamics of Membrane Conductances Increase Spiking Diversity in a Hodgkin-Huxley Model
Q33842165	Power-law input-output transfer functions explain the contrast-response and tuning properties of neurons in visual cortex
Q34236564	Power-law inter-spike interval distributions infer a conditional maximization of entropy in cortical neurons
Q33519506	Power-law scaling in the brain surface electric potential
Q35920941	Practical Approaches for Detecting Selection in Microbial Genomes
Q104266601	Practical considerations for measuring the effective reproductive number, Rt
Q104573996	Practical fluorescence reconstruction microscopy for large samples and low-magnification imaging
Q21563477	Practical guidelines for the comprehensive analysis of ChIP-seq data
Q30000956	Practical measures of integrated information for time-series data
Q33242798	Practical strategies for discovering regulatory DNA sequence motifs
Q113309114	Pre- and postsynaptically expressed spike-timing-dependent plasticity contribute differentially to neuronal learning
Q103744266	Pre-existing resistance in the latent reservoir can compromise VRC01 therapy during chronic HIV-1 infection
Q36170661	PreTIS: A Tool to Predict Non-canonical 5' UTR Translational Initiation Sites in Human and Mouse
Q103744087	Precise determination of input-output mapping for multimodal gene circuits using data from transient transfection
Q33404059	Precise regulation of gene expression dynamics favors complex promoter architectures
Q57281631	Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern
Q36220219	Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos
Q91796461	PrediTALE: A novel model learned from quantitative data allows for new perspectives on TALE targeting
Q36029474	PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.
Q37487954	PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations
Q64091710	Predictability in process-based ensemble forecast of influenza
Q21145317	Predictability of evolutionary trajectories in fitness landscapes
Q36106663	Predicted Molecular Effects of Sequence Variants Link to System Level of Disease
Q35645103	Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response
Q33545207	Predicted auxiliary navigation mechanism of peritrichously flagellated chemotactic bacteria.
Q33533321	Predicted functions of MdmX in fine-tuning the response of p53 to DNA damage
Q112708194	Predicted impact of the viral mutational landscape on the cytotoxic response against SARS-CoV-2
Q55338474	Predicting 3D structure and stability of RNA pseudoknots in monovalent and divalent ion solutions.
Q30379689	Predicting Achievable Fundamental Frequency Ranges in Vocalization Across Species.
Q28552587	Predicting Allosteric Effects from Orthosteric Binding in Hsp90-Ligand Interactions: Implications for Fragment-Based Drug Design
Q28548616	Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model
Q57454610	Predicting B cell receptor substitution profiles using public repertoire data
Q28546208	Predicting Binding Free Energy Change Caused by Point Mutations with Knowledge-Modified MM/PBSA Method
Q91439170	Predicting Meridian in Chinese traditional medicine using machine learning approaches
Q113309430	Predicting Protein Function With Hierarchical Phylogenetic Profiles: the Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes
Q33243971	Predicting Shine-Dalgarno sequence locations exposes genome annotation errors
Q113309631	Predicting Shine-Dalgarno sequence locations exposes genome annotation errors
Q36275410	Predicting Structure-Function Relations and Survival following Surgical and Bronchoscopic Lung Volume Reduction Treatment of Emphysema.
Q28551466	Predicting Surgery Targets in Temporal Lobe Epilepsy through Structural Connectome Based Simulations
Q33354928	Predicting and validating protein interactions using network structure
Q112289222	Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
Q100732639	Predicting antimicrobial resistance using conserved genes
Q28478693	Predicting binding to p-glycoprotein by flexible receptor docking
Q58098406	Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions
Q94445630	Predicting cell lineages using autoencoders and optimal transport
Q33396962	Predicting cellular growth from gene expression signatures
Q64238473	Predicting change: Approximate inference under explicit representation of temporal structure in changing environments
Q103745809	Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks
Q28544010	Predicting chemical environments of bacteria from receptor signaling
Q31153033	Predicting co-complexed protein pairs from heterogeneous data
Q89547362	Predicting colorectal cancer risk from adenoma detection via a two-type branching process model
Q35644738	Predicting cortical dark/bright asymmetries from natural image statistics and early visual transforms
Q36380092	Predicting cryptic links in host-parasite networks
Q31129426	Predicting disease risk using bootstrap ranking and classification algorithms
Q113308713	Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic
Q35170839	Predicting epidemic risk from past temporal contact data
Q36355111	Predicting explorative motor learning using decision-making and motor noise
Q33519499	Predicting functional alternative splicing by measuring RNA selection pressure from multigenome alignments
Q24811440	Predicting functional gene links from phylogenetic-statistical analyses of whole genomes
Q90561522	Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations
Q93045898	Predicting gastrointestinal drug effects using contextualized metabolic models
Q36176162	Predicting gene expression from sequence: a reexamination
Q90059865	Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features
Q90135314	Predicting gene regulatory interactions based on spatial gene expression data and deep learning
Q95845380	Predicting host taxonomic information from viral genomes: A comparison of feature representations
Q57805331	Predicting how and when hidden neurons skew measured synaptic interactions
Q33363096	Predicting human nucleosome occupancy from primary sequence
Q33632284	Predicting important residues and interaction pathways in proteins using Gaussian Network Model: binding and stability of HLA proteins
Q92416641	Predicting kinase inhibitors using bioactivity matrix derived informer sets
Q113309035	Predicting knee adduction moment response to gait retraining with minimal clinical data
Q97639980	Predicting lymphatic filariasis elimination in data-limited settings: A reconstructive computational framework for combining data generation and model discovery
Q112612556	Predicting mean ribosome load for 5'UTR of any length using deep learning
Q34824962	Predicting network activity from high throughput metabolomics
Q91356309	Predicting neuronal dynamics with a delayed gain control model
Q28476703	Predicting novel binding modes of agonists to β adrenergic receptors using all-atom molecular dynamics simulations
Q28533384	Predicting odor perceptual similarity from odor structure
Q21145341	Predicting odor pleasantness with an electronic nose
Q47554283	Predicting pathogenicity behavior in Escherichia coli population through a state dependent model and TRS profiling
Q47554667	Predicting peak spectral sensitivities of vertebrate cone visual pigments using atomistic molecular simulations
Q33406232	Predicting peptide structures in native proteins from physical simulations of fragments
Q35621798	Predicting peptide-mediated interactions on a genome-wide scale
Q33428992	Predicting phenotypic diversity and the underlying quantitative molecular transitions
Q33503650	Predicting positive p53 cancer rescue regions using Most Informative Positive (MIP) active learning
Q98199808	Predicting precision grip grasp locations on three-dimensional objects
Q124691416	Predicting primate tongue morphology based on geometrical skull matching. A first step towards an application on fossil hominins
Q33308257	Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes
Q28472023	Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure
Q60305725	Predicting protein targets for drug-like compounds using transcriptomics
Q64123070	Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen
Q34335490	Predicting signatures of "synthetic associations" and "natural associations" from empirical patterns of human genetic variation
Q34510126	Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state
Q64106292	Predicting synthetic lethal interactions using conserved patterns in protein interaction networks
Q35823216	Predicting the Effect of Mutations on Protein-Protein Binding Interactions through Structure-Based Interface Profiles
Q33480931	Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation
Q92498087	Predicting the effects of deep brain stimulation using a reduced coupled oscillator model
Q33504539	Predicting the evolution of sex on complex fitness landscapes
Q34426303	Predicting the extension of biomedical ontologies
Q113308587	Predicting the functional impact of KCNQ1 variants with artificial neural networks
Q35316916	Predicting the functions and specificity of triterpenoid synthases: a mechanism-based multi-intermediate docking approach
Q64123090	Predicting the mechanism and rate of H-NS binding to AT-rich DNA
Q47806814	Predicting the pathogenicity of novel variants in mitochondrial tRNA with MitoTIP.
Q28472133	Predicting the receptive range of olfactory receptors
Q33583587	Predicting the responses of repetitively firing neurons to current noise
Q92631980	Predicting three-dimensional genome organization with chromatin states
Q33545205	Predicting transmembrane helix packing arrangements using residue contacts and a force-directed algorithm
Q58611953	Prediction and classification in equation-free collective motion dynamics
Q34440598	Prediction and dissection of widely-varying association rate constants of actin-binding proteins
Q113308986	Prediction and expression analysis of deleterious nonsynonymous SNPs of Arabidopsis ACD11 gene by combining computational algorithms and molecular docking approach
Q35151544	Prediction and prioritization of rare oncogenic mutations in the cancer Kinome using novel features and multiple classifiers
Q33354935	Prediction by graph theoretic measures of structural effects in proteins arising from non-synonymous single nucleotide polymorphisms
Q28478989	Prediction by promoter logic in bacterial quorum sensing
Q113309555	Prediction of Amyloidogenic and Disordered Regions in Protein Chains
Q30378436	Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes.
Q47136810	Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time.
Q91144631	Prediction of PD-L1 inhibition effects for HIV-infected individuals
Q113309684	Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species
Q64096904	Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features
Q112586066	Prediction of amphipathic helix-membrane interactions with Rosetta
Q33267899	Prediction of amyloidogenic and disordered regions in protein chains
Q60955887	Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data
Q28479013	Prediction of cell penetrating peptides by support vector machines
Q21090162	Prediction of co-receptor usage of HIV-1 from genotype
Q28478623	Prediction of drug combinations by integrating molecular and pharmacological data
Q28483634	Prediction of drug-target interactions and drug repositioning via network-based inference
Q28534907	Prediction of drug-target interactions for drug repositioning only based on genomic expression similarity
Q33285864	Prediction of functional sites based on the fuzzy oil drop model
Q33292015	Prediction of gene expression in embryonic structures of Drosophila melanogaster
Q57030863	Prediction of gene regulatory enhancers across species reveals evolutionarily conserved sequence properties
Q33325895	Prediction of human disease genes by human-mouse conserved coexpression analysis
Q52376055	Prediction of infectious disease epidemics via weighted density ensembles.
Q113309503	Prediction of ligand binding site and functionally important residues based on fuzzy-oil-drop model
Q34335467	Prediction of microbial growth rate versus biomass yield by a metabolic network with kinetic parameters
Q28914732	Prediction of mutational tolerance in HIV-1 protease and reverse transcriptase using flexible backbone protein design
Q90970674	Prediction of off-target specificity and cell-specific fitness of CRISPR-Cas System using attention boosted deep learning and network-based gene feature
Q21145360	Prediction of protein binding regions in disordered proteins
Q28474551	Prediction of protein-protein interaction sites in sequences and 3D structures by random forests
Q28534474	Prediction of the P. falciparum target space relevant to malaria drug discovery
Q24813507	Prediction of transcriptional terminators in Bacillus subtilis and related species
Q64235544	Prediction of ultra-high-order antibiotic combinations based on pairwise interactions
Q92146723	Predictions of time to HIV viral rebound following ART suspension that incorporate personal biomarkers
Q41925641	Predictive coding of dynamical variables in balanced spiking networks
Q34468843	Predictive dynamics of human pain perception
Q34262987	Predictive features of persistent activity emergence in regular spiking and intrinsic bursting model neurons
Q33438444	Predictive feedback can account for biphasic responses in the lateral geniculate nucleus
Q45072805	Predictive model identifies key network regulators of cardiomyocyte mechano-signaling.
Q28533633	Predictive modeling of in vivo response to gemcitabine in pancreatic cancer
Q33285034	Predictive modeling of signaling crosstalk during C. elegans vulval development
Q55001925	Predictive modelling of a novel anti-adhesion therapy to combat bacterial colonisation of burn wounds.
Q104574122	Predictive network modeling in human induced pluripotent stem cells identifies key driver genes for insulin responsiveness
Q42370838	Predictive representations can link model-based reinforcement learning to model-free mechanisms
Q27324340	Predictors of hepatitis B cure using gene therapy to deliver DNA cleavage enzymes: a mathematical modeling approach
Q33369070	Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae
Q27319797	Preferred supramolecular organization and dimer interfaces of opioid receptors from simulated self-association
Q60960617	PremPDI estimates and interprets the effects of missense mutations on protein-DNA interactions
Q104618623	PremPS: Predicting the impact of missense mutations on protein stability
Q93196192	Prepaid parameter estimation without likelihoods
Q113308931	Preparing to move: Setting initial conditions to simplify interactions with complex objects
Q112728378	Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
Q98238198	Presynaptic inhibition rapidly stabilises recurrent excitation in the face of plasticity
Q92021331	Primacy coding facilitates effective odor discrimination when receptor sensitivities are tuned
Q31002057	Primary Visual Cortex as a Saliency Map: A Parameter-Free Prediction and Its Test by Behavioral Data
Q34165673	Principal component analysis characterizes shared pathogenetics from genome-wide association studies
Q26749162	Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics
Q108126928	Principles for data analysis workflows
Q55375858	Principles that govern competition or co-existence in Rho-GTPase driven polarization.
Q111323024	Prioritizing and characterizing functionally relevant genes across human tissues
Q113309628	Prioritizing genomic drug targets in pathogens
Q28469010	Prioritizing genomic drug targets in pathogens: application to Mycobacterium tuberculosis
Q28544631	Prioritizing therapeutics for lung cancer: an integrative meta-analysis of cancer gene signatures and chemogenomic data
Q113309329	Priority-based transformations of stimulus representation in visual working memory
Q34961681	Priors engaged in long-latency responses to mechanical perturbations suggest a rapid update in state estimation
Q112727383	ProMod3-A versatile homology modelling toolbox
Q36177095	Probabilistic Learning by Rodent Grid Cells
Q27940324	Probabilistic approach to predicting substrate specificity of methyltransferases
Q125344237	Probabilistic edge weights fine-tune Boolean network dynamics
Q36348592	Probabilistic fluorescence-based synapse detection
Q34118991	Probabilistic inference in general graphical models through sampling in stochastic networks of spiking neurons
Q28488586	Probabilistic inference of biochemical reactions in microbial communities from metagenomic sequences
Q28474887	Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy
Q42367558	Probabilistic models for neural populations that naturally capture global coupling and criticality.
Q33369084	Probabilistic phylogenetic inference with insertions and deletions
Q112565423	Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission
Q34456030	Probability fluxes and transition paths in a Markovian model describing complex subunit cooperativity in HCN2 channels
Q33654168	Probability matching as a computational strategy used in perception
Q113309200	Probing T-cell response by sequence-based probabilistic modeling
Q42366304	Probing eukaryotic cell mechanics via mesoscopic simulations.
Q47224226	Probing instructions for expression regulation in gene nucleotide compositions.
Q92006384	Probing neural networks for dynamic switches of communication pathways
Q35904949	Probing the Limits to MicroRNA-Mediated Control of Gene Expression
Q28487458	Probing the energy landscape of activation gating of the bacterial potassium channel KcsA
Q27337213	Probing the extent of randomness in protein interaction networks
Q28475173	Probing the flexibility of large conformational changes in protein structures through local perturbations
Q34311541	Probing the mutational interplay between primary and promiscuous protein functions: a computational-experimental approach
Q114345658	Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks
Q35988583	Problem Solving as Probabilistic Inference with Subgoaling: Explaining Human Successes and Pitfalls in the Tower of Hanoi
Q93075057	Problem-based learning in clinical bioinformatics education: Does it help to create communities of practice?
Q36131481	Processing Oscillatory Signals by Incoherent Feedforward Loops
Q34629118	Processing of multi-dimensional sensorimotor information in the spinal and cerebellar neuronal circuitry: a new hypothesis
Q58803069	Profiling cellular morphodynamics by spatiotemporal spectrum decomposition
Q112709401	Profiling transcription factor activity dynamics using intronic reads in time-series transcriptome data
Q36037854	Program Bytes: Satellite Meetings, SIGs, and AKEs at ISMB 2016.
Q113308945	Programming cell growth into different cluster shapes using diffusible signals
Q36051940	Progression of Diabetic Capillary Occlusion: A Model
Q112572568	Project-based learning course on metabolic network modelling in computational systems biology
Q40045625	Projecting social contact matrices in 152 countries using contact surveys and demographic data.
Q60305729	Projecting social contact matrices to different demographic structures
Q33632258	Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species
Q52580602	Propagating annotations of molecular networks using in silico fragmentation.
Q35212531	Propagating waves of directionality and coordination orchestrate collective cell migration.
Q92021311	Propagation of orientation selectivity in a spiking network model of layered primary visual cortex
Q35034097	Properties of MHC class I presented peptides that enhance immunogenicity
Q36070625	Properties of Neurons in External Globus Pallidus Can Support Optimal Action Selection
Q64954257	Properties of cardiac conduction in a cell-based computational model.
Q21145290	Proportionality: a valid alternative to correlation for relative data
Q36060906	Prospective Coding by Spiking Neurons
Q35772853	Prospective Optimization with Limited Resources
Q99603652	Prospects for detecting early warning signals in discrete event sequence data: Application to epidemiological incidence data
Q30465994	Prosthetic avian vocal organ controlled by a freely behaving bird based on a low dimensional model of the biomechanical periphery.
Q92772459	ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins
Q28551431	Protein Connectivity in Chemotaxis Receptor Complexes
Q33269155	Protein and DNA sequence determinants of thermophilic adaptation
Q113309549	Protein and DNA sequence determinants of thermophilic adaptation
Q36377720	Protein charge distribution in proteomes and its impact on translation
Q33361269	Protein complex evolution does not involve extensive network rewiring.
Q33842301	Protein complexes are central in the yeast genetic landscape
Q35130411	Protein complexes in bacteria.
Q33747611	Protein conservation and variation suggest mechanisms of cell type-specific modulation of signaling pathways
Q113308576	Protein degradation sets the fraction of active ribosomes at vanishing growth
Q28478881	Protein design using continuous rotamers
Q28473662	Protein docking by the underestimation of free energy funnels in the space of encounter complexes
Q112711946	Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases
Q35203134	Protein domain-level landscape of cancer-type-specific somatic mutations
Q64967550	Protein ensembles link genotype to phenotype.
Q21145685	Protein family expansions and biological complexity
Q21563515	Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems
Q33529039	Protein interaction networks--more than mere modules
Q33372096	Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information
Q24814913	Protein molecular function prediction by Bayesian phylogenomics
Q34042616	Protein networks as logic functions in development and cancer
Q34318172	Protein scaffolds can enhance the bistability of multisite phosphorylation systems
Q28543715	Protein sectors: statistical coupling analysis versus conservation
Q112586499	Protein sequence optimization with a pairwise decomposable penalty for buried unsatisfied hydrogen bonds
Q113309135	Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders
Q35233581	Protein surface softness is the origin of enzyme cold-adaptation of trypsin
Q35571964	Protein topology determines cysteine oxidation fate: the case of sulfenyl amide formation among protein families
Q61450768	Protein-protein binding supersites
Q35514778	Protein-protein docking with dynamic residue protonation states
Q28469249	Protein-protein interaction hotspots carved into sequences
Q21145336	Protein-protein interactions essentials: key concepts to building and analyzing interactome networks
Q28536035	Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information
Q100529654	Protein-protein interactions in neurodegenerative diseases: A conspiracy theory
Q28469024	Protein-protein interactions more conserved within species than across species
Q113309615	Protein-protein interactions more conserved within than across species
Q34325454	ProteinHistorian: tools for the comparative analysis of eukaryote protein origin
Q90777211	ProteinVR: Web-based molecular visualization in virtual reality
Q28479221	Proteins with complex architecture as potential targets for drug design: a case study of Mycobacterium tuberculosis
Q90159786	ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
Q34276972	Proteome sampling by the HLA class I antigen processing pathway
Q58622946	Proteome-scale relationships between local amino acid composition and protein fates and functions
Q104468264	Proteostasis is adaptive: Balancing chaperone holdases against foldases
Q92205188	Protons in small spaces: Discrete simulations of vesicle acidification
Q27334102	Protrusive push versus enveloping embrace: computational model of phagocytosis predicts key regulatory role of cytoskeletal membrane anchors
Q99411738	Providing new insights on the biphasic lifestyle of the predatory bacterium Bdellovibrio bacteriovorus through genome-scale metabolic modeling
Q113309520	Psychophysical tests of the hypothesis of a bottom up saliency map in primary visual cortex
Q33281286	Psychophysical tests of the hypothesis of a bottom-up saliency map in primary visual cortex
Q37596212	Psychotic Experiences and Overhasty Inferences Are Related to Maladaptive Learning
Q113308526	Pulmonary drug delivery and retention: A computational study to identify plausible parameters based on a coupled airway-mucus flow model
Q113308651	Pulsatile contractions and pattern formation in excitable actomyosin cortex
Q92638291	Pulse transit time estimation of aortic pulse wave velocity and blood pressure using machine learning and simulated training data
Q113309068	Pulsed low-energy stimulation initiates electric turbulence in cardiac tissue
Q90364737	Punishment and inspection for governing the commons in a feedback-evolving game
Q34212438	Pupil-linked arousal determines variability in perceptual decision making
Q33497895	Pushing structural information into the yeast interactome by high-throughput protein docking experiments
Q58587967	Putting benchmarks in their rightful place: The heart of computational biology
Q27320818	Putting theory to the test: which regulatory mechanisms can drive realistic growth of a root?
Q100732709	PyHIST: A Histological Image Segmentation Tool
Q36377708	PyLDM - An open source package for lifetime density analysis of time-resolved spectroscopic data
Q100732615	PyOIF: Computational tool for modelling of multi-cell flows in complex geometries
Q64883423	PyPhi: A toolbox for integrated information theory.
Q125345535	Pyfectious: An individual-level simulator to discover optimal containment policies for epidemic diseases
Q34679588	Pyranose dehydrogenase ligand promiscuity: a generalized approach to simulate monosaccharide solvation, binding, and product formation
Q36059754	QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks
Q21563501	Qualia: the geometry of integrated information
Q36124152	Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes
Q28550460	Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations
Q34302143	Quality of computationally inferred gene ontology annotations
Q30151952	Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments
Q101154975	Quantification of Ebola virus replication kinetics in vitro
Q33778662	Quantification of HTLV-1 clonality and TCR diversity
Q28546898	Quantification of Interactions between Dynamic Cellular Network Functionalities by Cascaded Layering
Q30946744	Quantification of circadian rhythms in single cells
Q30927990	Quantification of diabetes comorbidity risks across life using nation-wide big claims data
Q33384418	Quantification of local morphodynamics and local GTPase activity by edge evolution tracking
Q113309322	Quantification of long-term doxorubicin response dynamics in breast cancer cell lines to direct treatment schedules
Q104266513	Quantification of nematic cell polarity in three-dimensional tissues
Q33847798	Quantification of the relative importance of CTL, B cell, NK cell, and target cell limitation in the control of primary SIV-infection
Q41235268	Quantification of transplant-derived circulating cell-free DNA in absence of a donor genotype
Q35909370	Quantifying Clonal and Subclonal Passenger Mutations in Cancer Evolution
Q36192578	Quantifying Differences and Similarities in Whole-Brain White Matter Architecture Using Local Connectome Fingerprints
Q35847051	Quantifying Stochastic Noise in Cultured Circadian Reporter Cells
Q28550263	Quantifying Transmission Investment in Malaria Parasites
Q33549704	Quantifying aggregated uncertainty in Plasmodium falciparum malaria prevalence and populations at risk via efficient space-time geostatistical joint simulation
Q35944354	Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference
Q34335472	Quantifying and analyzing the network basis of genetic complexity
Q33650035	Quantifying and predicting the effect of exogenous interleukin-7 on CD4+ T cells in HIV-1 infection
Q113308496	Quantifying biochemical reaction rates from static population variability within incompletely observed complex networks
Q34916581	Quantifying cell fate decisions for differentiation and reprogramming of a human stem cell network: landscape and biological paths
Q28535113	Quantifying chaperone-mediated transitions in the proteostasis network of E. coli
Q38662535	Quantifying critical states of complex diseases using single-sample dynamic network biomarkers
Q112707413	Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions
Q113309198	Quantifying dose-, strain-, and tissue-specific kinetics of parainfluenza virus infection
Q28474957	Quantifying global tolerance of biochemical systems: design implications for moiety-transfer cycles
Q28477483	Quantifying intramolecular binding in multivalent interactions: a structure-based synergistic study on Grb2-Sos1 complex
Q90218695	Quantifying model evidence for yellow fever transmission routes in Africa
Q91267456	Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process
Q35536617	Quantifying spike train oscillations: biases, distortions and solutions
Q36282558	Quantifying the Value of Perfect Information in Emergency Vaccination Campaigns
Q34325481	Quantifying the contribution of the liver to glucose homeostasis: a detailed kinetic model of human hepatic glucose metabolism
Q42708321	Quantifying the effects of antiangiogenic and chemotherapy drug combinations on drug delivery and treatment efficacy.
Q28473916	Quantifying the effects of elastic collisions and non-covalent binding on glutamate receptor trafficking in the post-synaptic density
Q28655357	Quantifying the impact and extent of undocumented biomedical synonymy
Q104059223	Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing
Q113309118	Quantifying the impact of ecological memory on the dynamics of interacting communities
Q33747537	Quantifying the impact of human immunodeficiency virus-1 escape from cytotoxic T-lymphocytes
Q35212605	Quantifying the length and variance of the eukaryotic cell cycle phases by a stochastic model and dual nucleoside pulse labelling
Q27324515	Quantifying the molecular origins of opposite solvent effects on protein-protein interactions
Q33886116	Quantifying the relative contributions of divisive and subtractive feedback to rhythm generation
Q35224832	Quantifying the role of population subdivision in evolution on rugged fitness landscapes
Q33570965	Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock.
Q90634657	Quantifying the roles of vomiting, diarrhea, and residents vs. staff in norovirus transmission in U.S. nursing home outbreaks
Q43509398	Quantifying the strength of quorum sensing crosstalk within microbial communities
Q34393716	Quantifying the turnover of transcriptional subclasses of HIV-1-infected cells
Q35568110	Quantifying two-dimensional filamentous and invasive growth spatial patterns in yeast colonies
Q30415533	Quantifying type-specific reproduction numbers for nosocomial pathogens: evidence for heightened transmission of an Asian sequence type 239 MRSA clone
Q27316612	Quantitative Analysis of Axonal Branch Dynamics in the Developing Nervous System
Q113309667	Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments
Q35694340	Quantitative Analysis of the Association Angle between T-cell Receptor Vα/Vβ Domains Reveals Important Features for Epitope Recognition
Q36257683	Quantitative Comparison of Abundance Structures of Generalized Communities: From B-Cell Receptor Repertoires to Microbiomes
Q27318068	Quantitative Live Imaging of Human Embryonic Stem Cell Derived Neural Rosettes Reveals Structure-Function Dynamics Coupled to Cortical Development
Q33260345	Quantitative analyses of circadian gene expression in mammalian cell cultures
Q33293161	Quantitative analysis of cell nucleus organisation.
Q24811559	Quantitative analysis of genetic and neuronal multi-perturbation experiments
Q34769244	Quantitative analysis of glycerol accumulation, glycolysis and growth under hyper osmotic stress
Q33717041	Quantitative analysis of immune response and erythropoiesis during rodent malarial infection
Q33474866	Quantitative analysis of mechanisms that govern red blood cell age structure and dynamics during anaemia
Q55080415	Quantitative analysis reveals crosstalk mechanisms of heat shock-induced attenuation of NF-κB signaling at the single cell level.
Q92227707	Quantitative cell-based model predicts mechanical stress response of growing tumor spheroids over various growth conditions and cell lines
Q101348994	Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein
Q28473198	Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function
Q34510141	Quantitative dynamics of telomere bouquet formation
Q28478118	Quantitative epistasis analysis and pathway inference from genetic interaction data
Q113308889	Quantitative modeling identifies critical cell mechanics driving bile duct lumen formation
Q33553425	Quantitative modeling of Escherichia coli chemotactic motion in environments varying in space and time
Q28472427	Quantitative modeling of GRK-mediated beta2AR regulation
Q35113491	Quantitative modeling of a gene's expression from its intergenic sequence.
Q33842172	Quantitative prediction of miRNA-mRNA interaction based on equilibrium concentrations
Q28483033	Quantitative predictions of binding free energy changes in drug-resistant influenza neuraminidase
Q33349439	Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan
Q112313246	Quantitative profiling of protease specificity
Q35112711	Quantitative protein localization signatures reveal an association between spatial and functional divergences of proteins
Q58694020	Quantitative single cell analysis uncovers the life/death decision in CD95 network
Q33680648	Quantitative test of the barrier nucleosome model for statistical positioning of nucleosomes up- and downstream of transcription start sites
Q55426777	Quantitative theory of deep brain stimulation of the subthalamic nucleus for the suppression of pathological rhythms in Parkinson's disease.
Q28541683	Quantitatively characterizing the ligand binding mechanisms of choline binding protein using Markov state model analysis
Q57794083	Quantum chemistry reveals thermodynamic principles of redox biochemistry
Q64883031	Quasiperiodic rhythms of the inferior olive.
Q24810300	Quasispecies made simple
Q113309525	Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
Q21563508	Query-dependent banding (QDB) for faster RNA similarity searches
Q33396958	Questioning the ubiquity of neofunctionalization
Q49980867	Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.
Q27316715	Quorum Sensing Desynchronization Leads to Bimodality and Patterned Behaviors
Q98169778	Quorum sensing via dynamic cytokine signaling comprehensively explains divergent patterns of effector choice among helper T cells
Q40822695	Quorum-Sensing Synchronization of Synthetic Toggle Switches: A Design Based on Monotone Dynamical Systems Theory
Q89717630	RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set method
Q58601350	RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
Q125341978	RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks
Q112589758	REDCRAFT: A computational platform using residual dipolar coupling NMR data for determining structures of perdeuterated proteins in solution
Q111150161	RESCRIPt: Reproducible sequence taxonomy reference database management
Q34633894	RFECS: a random-forest based algorithm for enhancer identification from chromatin state
Q52561256	RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning.
Q113308905	RNA editing regulates lncRNA splicing in human early embryo development
Q113308589	RNA folding using quantum computers
Q113308786	RNA length has a non-trivial effect in the stability of biomolecular condensates formed by RNA-binding proteins
Q101126504	RNA structure prediction using positive and negative evolutionary information
Q112705500	RNA-Seq is not required to determine stable reference genes for qPCR normalization
Q34229580	RNA-Seq mapping and detection of gene fusions with a suffix array algorithm
Q59807840	RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks
Q113308414	RNANetMotif: Identifying sequence-structure RNA network motifs in RNA-protein binding sites
Q30985446	RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins
Q42840241	RNAi development
Q36380107	ROTS: An R package for reproducibility-optimized statistical testing
Q35920817	Radial Frequency Analysis of Contour Shapes in the Visual Cortex
Q27332154	Radial and spiral stream formation in Proteus mirabilis colonies
Q113308484	Radical pairs may explain reactive oxygen species-mediated effects of hypomagnetic field on neurogenesis
Q112747393	Radio-frequency exposure of the yellow fever mosquito (A. aegypti) from 2 to 240 GHz
Q30428998	Rampant exchange of the structure and function of extramembrane domains between membrane and water soluble proteins
Q95943053	Ranbow: A fast and accurate method for polyploid haplotype reconstruction
Q35843622	Random Wiring, Ganglion Cell Mosaics, and the Functional Architecture of the Visual Cortex
Q34440613	Random field model reveals structure of the protein recombinational landscape
Q34015142	Random migration and signal integration promote rapid and robust T cell recruitment
Q94606039	Randomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons
Q114868225	Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions
Q112726305	Rapid 3D phenotypic analysis of neurons and organoids using data-driven cell segmentation-free machine learning
Q28834535	Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming
Q125341583	Rapid detection and recognition of whole brain activity in a freely behaving Caenorhabditis elegans
Q64063412	Rapid interpretation of small-angle X-ray scattering data
Q100739831	Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis
Q27336041	Rapid sampling of molecular motions with prior information constraints
Q33879541	Rapid target foraging with reach or gaze: The hand looks further ahead than the eye
Q33604782	Rapid transition towards the Division of Labor via evolution of developmental plasticity
Q36063830	Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level
Q58801218	Rare-event sampling of epigenetic landscapes and phenotype transitions
Q27335812	Ras conformational switching: simulating nucleotide-dependent conformational transitions with accelerated molecular dynamics
Q27322823	Rates of CTL killing in persistent viral infection in vivo
Q28545971	Rational Design and Adaptive Management of Combination Therapies for Hepatitis C Virus Infection
Q113309283	Rational design of complex phenotype via network models
Q92803555	Rational discovery of dual-indication multi-target PDE/Kinase inhibitor for precision anti-cancer therapy using structural systems pharmacology
Q34341341	Rational engineering of enzyme allosteric regulation through sequence evolution analysis
Q52563753	Rational metareasoning and the plasticity of cognitive control.
Q28472226	Rational mutational analysis of a multidrug MFS transporter CaMdr1p of Candida albicans by employing a membrane environment based computational approach
Q113309110	Rats spontaneously perceive global motion direction of drifting plaids
Q24815762	ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun
Q113309676	ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun
Q113309130	ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation
Q64091702	ReaDDy 2: Fast and flexible software framework for interacting-particle reaction dynamics
Q33869041	Reactive oxygen species production by forward and reverse electron fluxes in the mitochondrial respiratory chain
Q34415711	Reactive searching and infotaxis in odor source localization
Q27832078	Reactome from a WikiPathways Perspective
Q48149893	Reactome graph database: Efficient access to complex pathway data.
Q44959546	Reading wild minds: A computational assay of Theory of Mind sophistication across seven primate species.
Q36253750	Real Time Multiplicative Memory Amplification Mediated by Whole-Cell Scaling of Synaptic Response in Key Neurons
Q97437299	Real time structural search of the protein data bank
Q30367930	Real-Time Control of an Articulatory-Based Speech Synthesizer for Brain Computer Interfaces
Q56636255	Real-time decision-making during emergency disease outbreaks
Q98508213	Real-time estimation of disease activity in emerging outbreaks using internet search information
Q112727821	Real-time resolution of short-read assembly graph using ONT long reads
Q104105175	Real-time structural motif searching in proteins using an inverted index strategy
Q89802196	Realistic assumptions about spatial locations and clustering of premises matter for models of foot-and-mouth disease spread in the United States
Q96032270	Realistic modeling of mesoscopic ephaptic coupling in the human brain
Q113308825	Realistic retinal modeling unravels the differential role of excitation and inhibition to starburst amacrine cells in direction selectivity
Q92368104	Reappraising the utility of Google Flu Trends
Q38649288	Rearrangement moves on rooted phylogenetic networks
Q27700202	Reassessing Google Flu Trends Data for Detection of Seasonal and Pandemic Influenza: A Comparative Epidemiological Study at Three Geographic Scales
Q112570651	RecPD: A Recombination-aware measure of phylogenetic diversity
Q21145665	Recent evolutions of multiple sequence alignment algorithms
Q64068064	Recentrifuge: Robust comparative analysis and contamination removal for metagenomics
Q34064141	Receptive field inference with localized priors
Q42067630	Receptor concentration and diffusivity control multivalent binding of Sv40 to membrane bilayers
Q55281238	Receptor recharge time drastically reduces the number of captured particles.
Q31160663	Reciprocal regulation as a source of ultrasensitivity in two-component systems with a bifunctional sensor kinase
Q50041793	Recognition of sites of functional specialisation in all known eukaryotic protein kinase families.
Q24813203	Recognition of unknown conserved alternatively spliced exons
Q27335455	Recognizing sequences of sequences
Q92021324	Recombinant vector vaccine evolution
Q35875253	Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population.
Q92638300	Recombination and mutational robustness in neutral fitness landscapes
Q28472689	Recombination rate and selection strength in HIV intra-patient evolution
Q30432712	Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis
Q28550047	Reconciling Estimates of Cell Proliferation from Stable Isotope Labeling Experiments
Q104514873	Reconciling emergences: An information-theoretic approach to identify causal emergence in multivariate data
Q63976636	Reconciling high-throughput gene essentiality data with metabolic network reconstructions
Q35596497	Reconstructible phylogenetic networks: do not distinguish the indistinguishable
Q113309131	Reconstructing contact network structure and cross-immunity patterns from multiple infection histories
Q112691361	Reconstructing feedback representations in the ventral visual pathway with a generative adversarial autoencoder
Q30580087	Reconstructing mammalian sleep dynamics with data assimilation
Q42366292	Reconstructing promoter activity from Lux bioluminescent reporters.
Q29394572	Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data
Q35022283	Reconstructing the genomic content of microbiome taxa through shotgun metagenomic deconvolution
Q38662528	Reconstructing the regulatory circuit of cell fate determination in yeast mating response
Q28476344	Reconstructing the three-dimensional GABAergic microcircuit of the striatum
Q36312079	Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells.
Q28535020	Reconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARM
Q35997094	Reconstruction of Cell Surface Densities of Ion Pumps, Exchangers, and Channels from mRNA Expression, Conductance Kinetics, Whole-Cell Calcium, and Current-Clamp Voltage Recordings, with an Application to Human Uterine Smooth Muscle Cells
Q28388815	Reconstruction of Tissue-Specific Metabolic Networks Using CORDA
Q28483779	Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT
Q33335143	Reconstruction of protein backbones from the BriX collection of canonical protein fragments
Q35315983	Reconstruction of the gene regulatory network involved in the sonic hedgehog pathway with a potential role in early development of the mouse brain
Q34118997	Recovering protein-protein and domain-domain interactions from aggregation of IP-MS proteomics of coregulator complexes
Q35909924	Recovery of Dynamics and Function in Spiking Neural Networks with Closed-Loop Control
Q93061301	Recurrent interactions can explain the variance in single trial responses
Q33463417	Recurrent network models for perfect temporal integration of fluctuating correlated inputs
Q100420516	Recurrent neural networks can explain flexible trading of speed and accuracy in biological vision
Q91439166	Recurrent somatic mutations reveal new insights into consequences of mutagenic processes in cancer
Q38657578	Recurrently connected and localized neuronal communities initiate coordinated spontaneous activity in neuronal networks
Q113309345	Recursive MAGUS: Scalable and accurate multiple sequence alignment
Q35849756	Red Queen Processes Drive Positive Selection on Major Histocompatibility Complex (MHC) Genes
Q33493395	Red Queen dynamics with non-standard fitness interactions
Q93011690	Red blood cells stabilize flow in brain microvascular networks
Q64240773	RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion
Q28485150	Redirector: designing cell factories by reconstructing the metabolic objective
Q34671799	Reduced lateral mobility of lipids and proteins in crowded membranes
Q92156727	Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions
Q92416631	Reduced model to predict thrombin and fibrin during thrombosis on collagen/tissue factor under venous flow: Roles of γ'-fibrin and factor XIa
Q33680638	Reduction in learning rates associated with anterograde interference results from interactions between different timescales in motor adaptation
Q100561464	Reduction in social learning and increased policy uncertainty about harmful intent is associated with pre-existing paranoid beliefs: Evidence from modelling a modified serial dictator game
Q36392906	Reduction of multiscale stochastic biochemical reaction networks using exact moment derivation
Q33632273	Redundancy and the evolution of cis-regulatory element multiplicity.
Q27318167	Refinement and Pattern Formation in Neural Circuits by the Interaction of Traveling Waves with Spike-Timing Dependent Plasticity
Q35814637	Refinement of the Central Steps of Substrate Transport by the Aspartate Transporter GltPh: Elucidating the Role of the Na2 Sodium Binding Site
Q24811585	Refining protein subcellular localization
Q30459305	Refractoriness in sustained visuo-manual control: is the refractory duration intrinsic or does it depend on external system properties?
Q100537393	Refractory density model of cortical direction selectivity: Lagged-nonlagged, transient-sustained, and On-Off thalamic neuron-based mechanisms and intracortical amplification
Q98181078	Regional sequence expansion or collapse in heterozygous genome assemblies
Q33687035	Regression analysis for constraining free parameters in electrophysiological models of cardiac cells.
Q34393824	Regression analysis of combined gene expression regulation in acute myeloid leukemia
Q40348396	Regulated CRISPR Modules Exploit a Dual Defense Strategy of Restriction and Abortive Infection in a Model of Prokaryote-Phage Coevolution
Q35846181	Regulation of Early Steps of GPVI Signal Transduction by Phosphatases: A Systems Biology Approach
Q58785299	Regulation of Pom cluster dynamics in Myxococcus xanthus
Q26777344	Regulation of Spatiotemporal Patterns by Biological Variability: General Principles and Applications to Dictyostelium discoideum
Q91005559	Regulation of adenylyl cyclase 5 in striatal neurons confers the ability to detect coincident neuromodulatory signals
Q60308930	Regulation of harvester ant foraging as a closed-loop excitable system
Q33347117	Regulation of signal duration and the statistical dynamics of kinase activation by scaffold proteins
Q21145294	Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions
Q113309146	Regulation of transcription reactivation dynamics exiting mitosis
Q30956005	Regulators associated with clinical outcomes revealed by DNA methylation data in breast cancer
Q35753722	Regulatory circuit of human microRNA biogenesis
Q92149982	Regulatory context drives conservation of glycine riboswitch aptamers
Q28473536	Regulatory control and the costs and benefits of biochemical noise
Q34456053	Regulatory network structure as a dominant determinant of transcription factor evolutionary rate
Q113308748	Regulatory network-based imputation of dropouts in single-cell RNA sequencing data
Q36083050	Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin
Q35819126	Reinforcement Learning of Linking and Tracing Contours in Recurrent Neural Networks
Q33680656	Reinforcement learning on slow features of high-dimensional input streams
Q34671773	Reinforcement learning using a continuous time actor-critic framework with spiking neurons
Q35763262	Relating Alpha Power and Phase to Population Firing and Hemodynamic Activity Using a Thalamo-cortical Neural Mass Model
Q35826199	Relating Cortical Atrophy in Temporal Lobe Epilepsy with Graph Diffusion-Based Network Models
Q42363518	Relating dynamic brain states to dynamic machine states: Human and machine solutions to the speech recognition problem
Q33480965	Relating neuronal firing patterns to functional differentiation of cerebral cortex
Q113309257	Relating simulation studies by provenance—Developing a family of Wnt signaling models
Q28541183	Relating structure and function in the human brain: relative contributions of anatomy, stationary dynamics, and non-stationarities
Q98950155	Relations between large-scale brain connectivity and effects of regional stimulation depend on collective dynamical state
Q27320844	Relationships between Th1 or Th2 iNKT cell activity and structures of CD1d-antigen complexes: meta-analysis of CD1d-glycolipids dynamics simulations
Q21145329	Relationships between gene expression and brain wiring in the adult rodent brain
Q55004885	Relatively slow stochastic gene-state switching in the presence of positive feedback significantly broadens the region of bimodality through stabilizing the uninduced phenotypic state.
Q113309205	Relaxing restrictions at the pace of vaccination increases freedom and guards against further COVID-19 waves
Q113746492	Relevance of intra-hospital patient movements for the spread of healthcare-associated infections within hospitals - a mathematical modeling study
Q33632276	Reliability of transcriptional cycles and the yeast cell-cycle oscillator
Q34539694	Reliable B cell epitope predictions: impacts of method development and improved benchmarking
Q98296650	Reliable estimation of membrane curvature for cryo-electron tomography
Q91742589	Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling
Q28607098	Remodeling and Tenacity of Inhibitory Synapses: Relationships with Network Activity and Neighboring Excitatory Synapses
Q103743887	Remote homology search with hidden Potts models
Q33373659	Removal of AU bias from microarray mRNA expression data enhances computational identification of active microRNAs
Q63647898	Removing contaminants from databases of draft genomes
Q113308941	Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data
Q34229543	Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines
Q34085612	Replication pauses of the wild-type and mutant mitochondrial DNA polymerase gamma: a simulation study
Q34058046	Replication timing: a fingerprint for cell identity and pluripotency
Q28974719	Reply to "Ten simple rules for getting published"
Q47172167	Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening
Q92124241	Representation learning of genomic sequence motifs with convolutional neural networks
Q34058085	Representation of dynamical stimuli in populations of threshold neurons
Q96648801	Representation of foreseeable choice outcomes in orbitofrontal cortex triplet-wise interactions
Q30489983	Representation of time-varying stimuli by a network exhibiting oscillations on a faster time scale
Q36355061	Representational models: A common framework for understanding encoding, pattern-component, and representational-similarity analysis
Q92269675	Representational structure or task structure? Bias in neural representational similarity analysis and a Bayesian method for reducing bias
Q34079136	Representational switching by dynamical reorganization of attractor structure in a network model of the prefrontal cortex
Q58549094	Representations of regular and irregular shapes by deep Convolutional Neural Networks, monkey inferotemporal neurons and human judgments
Q113309395	Representing Where along with What Information in a Model of a Cortical Patch
Q30362540	Representing high throughput expression profiles via perturbation barcodes reveals compound targets
Q30496622	Representing where along with what information in a model of a cortical patch
Q27339483	Repressor dimerization in the zebrafish somitogenesis clock
Q35763503	ReproPhylo: An Environment for Reproducible Phylogenomics
Q89876255	Reprogramming of macrophages employing gene regulatory and metabolic network models
Q35852409	Reputation Effects in Public and Private Interactions
Q59486954	Reputation Effects in Public and Private Interactions
Q27334512	Rescuing loading induced bone formation at senescence
Q36048497	Reservoir Computing Properties of Neural Dynamics in Prefrontal Cortex
Q91886144	Reservoir computing model of prefrontal cortex creates novel combinations of previous navigation sequences from hippocampal place-cell replay with spatial reward propagation
Q28552126	Residual Viremia in Treated HIV+ Individuals
Q34130185	Residual structures, conformational fluctuations, and electrostatic interactions in the synergistic folding of two intrinsically disordered proteins
Q96770590	Resilience of three-dimensional sinusoidal networks in liver tissue
Q91806155	Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial
Q34281449	Resolving anatomical and functional structure in human brain organization: identifying mesoscale organization in weighted network representations
Q35133186	Resolving structural variability in network models and the brain
Q22065253	Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs
Q99561528	Response nonlinearities in networks of spiking neurons
Q113309308	Responses to 10 common criticisms of anti-racism action in STEMM
Q35098587	Resting-state temporal synchronization networks emerge from connectivity topology and heterogeneity
Q30428551	Restricted N-glycan conformational space in the PDB and its implication in glycan structure modeling
Q95846070	Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites
Q92936698	Resurgent Na+ Current Offers Noise Modulation in Bursting Neurons
Q35208233	Rethinking transcriptional activation in the Arabidopsis circadian clock
Q113308946	Retinal optic flow during natural locomotion
Q27339144	Retinal wave behavior through activity-dependent refractory periods
Q27333107	Retracing micro-epidemics of Chagas disease using epicenter regression
Q42530234	Retraction: Measures of clade confidence do not correlate with accuracy of phylogenetic trees
Q60539327	Retraction: Multi-scale inference of interaction rules in animal groups using Bayesian model selection
Q36157697	Retrospective Parameter Estimation and Forecast of Respiratory Syncytial Virus in the United States
Q33358661	Retroviral integration process in the human genome: is it really non-random? A new statistical approach
Q26747130	Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations
Q35666295	Revealing Pathway Dynamics in Heart Diseases by Analyzing Multiple Differential Networks
Q34629102	Revealing a two-loop transcriptional feedback mechanism in the cyanobacterial circadian clock
Q64095077	Revealing evolutionary constraints on proteins through sequence analysis
Q112557684	Revealing mechanisms of infectious disease spread through empirical contact networks
Q30847567	Revealing molecular mechanisms by integrating high-dimensional functional screens with protein interaction data
Q113309664	Revealing post-transcriptional regulatory interactions through network-level conservation
Q24815882	Revealing posttranscriptional regulatory elements through network-level conservation
Q30386038	Revealing the True Incidence of Pandemic A(H1N1)pdm09 Influenza in Finland during the First Two Seasons - An Analysis Based on a Dynamic Transmission Model.
Q33701612	Reverse engineering of oxygen transport in the lung: adaptation to changing demands and resources through space-filling networks
Q34619965	Reverse engineering the gap gene network of Drosophila melanogaster
Q35034121	Reverse-engineering post-transcriptional regulation of gap genes in Drosophila melanogaster
Q34079142	Reversible and noisy progression towards a commitment point enables adaptable and reliable cellular decision-making
Q55449469	Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response.
Q113309204	Review of machine learning methods for RNA secondary structure prediction
Q62648881	Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers
Q41456188	Revisiting chemoaffinity theory: Chemotactic implementation of topographic axonal projection
Q33619022	Revisiting date and party hubs: novel approaches to role assignment in protein interaction networks
Q92043351	Revisiting the "satisfaction of spatial restraints" approach of MODELLER for protein homology modeling
Q34557988	Reward from punishment does not emerge at all costs
Q91794219	Reward-driven changes in striatal pathway competition shape evidence evaluation in decision-making
Q100560870	Reward-predictive representations generalize across tasks in reinforcement learning
Q113309080	RgCop-A regularized copula based method for gene selection in single-cell RNA-seq data
Q33367103	Rhythm generation through period concatenation in rat somatosensory cortex
Q33780990	Rhythmic dynamics and synchronization via dimensionality reduction: application to human gait
Q34394563	Rhythmic manipulation of objects with complex dynamics: predictability over chaos
Q33815550	Ribavirin-induced anemia in hepatitis C virus patients undergoing combination therapy
Q36396933	Ribosome reinitiation can explain length-dependent translation of messenger RNA.
Q34574789	Ribosome traffic on mRNAs maps to gene ontology: genome-wide quantification of translation initiation rates and polysome size regulation
Q28550945	Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis
Q64086701	Rich-club connectivity, diverse population coupling, and dynamical activity patterns emerging from local cortical circuits
Q28551601	Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery
Q113309264	Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure
Q41485516	Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments
Q21145314	Rise and demise of bioinformatics? Promise and progress
Q35753709	Risk maps for the spread of highly pathogenic avian influenza in poultry
Q113309513	Risk maps for the spread of highly pathogenic avian influenza in poultry
Q113309299	Risk sensitivity and theory of mind in human coordination
Q33809338	Risk, unexpected uncertainty, and estimation uncertainty: Bayesian learning in unstable settings
Q33640079	Risk-sensitive optimal feedback control accounts for sensorimotor behavior under uncertainty
Q34426388	Risk-sensitivity in Bayesian sensorimotor integration
Q35976685	Robust Brain-Machine Interface Design Using Optimal Feedback Control Modeling and Adaptive Point Process Filtering
Q36082996	Robust Inference of Cell-to-Cell Expression Variations from Single- and K-Cell Profiling
Q35919354	Robust Unidirectional Airflow through Avian Lungs: New Insights from a Piecewise Linear Mathematical Model
Q48295527	Robust and efficient coding with grid cells.
Q39311824	Robust averaging protects decisions from noise in neural computations.
Q33417640	Robust detection and genotyping of single feature polymorphisms from gene expression data
Q34181304	Robust detection of hierarchical communities from Escherichia coli gene expression data
Q104514786	Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers
Q113308921	Robust dynamic experiments for the precise estimation of respiration and fermentation parameters of fruit and vegetables
Q28652954	Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
Q36349659	Robust information propagation through noisy neural circuits
Q33515269	Robust models for optic flow coding in natural scenes inspired by insect biology
Q21563483	Robust network topologies for generating switch-like cellular responses
Q31044375	Robust signal processing in living cells
Q58723464	Robust spatial memory maps encoded by networks with transient connections
Q33853849	Robust transmission of rate coding in the inhibitory Purkinje cell to cerebellar nuclei pathway in awake mice
Q113309568	Robustness and Fragility in Immunosenescence
Q28541382	Robustness and evolvability of the human signaling network
Q33264402	Robustness and fragility in immunosenescence
Q94512170	Robustness and parameter geography in post-translational modification systems
Q28469133	Robustness can evolve gradually in complex regulatory gene networks with varying topology
Q28474890	Robustness in glyoxylate bypass regulation
Q31151033	Robustness of DNA repair through collective rate control
Q28476105	Robustness of circadian clocks to daylight fluctuations: hints from the picoeucaryote Ostreococcus tauri
Q33325880	Robustness of learning that is based on covariance-driven synaptic plasticity
Q92286378	Robustness of respiratory rhythm generation across dynamic regimes
Q91596303	Robustness of the Dorsal morphogen gradient with respect to morphogen dosage
Q33573536	Robustness under functional constraint: the genetic network for temporal expression in Drosophila neurogenesis
Q34758172	Rocky mountain conference on bioinformatics celebrates 10 years
Q36224692	Role of Autoregulation and Relative Synthesis of Operon Partners in Alternative Sigma Factor Networks
Q28388265	Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration
Q33700525	Role of Hsp70 ATPase domain intrinsic dynamics and sequence evolution in enabling its functional interactions with NEFs
Q113309650	Role of Mechanical Factors in the Morphology of the Primate Cerebral Cortex
Q113308434	Role of actin filaments and cis binding in cadherin clustering and patterning
Q90059844	Role of dynamic nuclear deformation on genomic architecture reorganization
Q51783294	Role of genetic heterogeneity in determining the epidemiological severity of H1N1 influenza.
Q21145319	Role of histone tails in structural stability of the nucleosome
Q28475955	Role of lipids in spheroidal high density lipoproteins
Q25257246	Role of mechanical factors in the morphology of the primate cerebral cortex
Q111490252	Role of neutrophil extracellular traps in regulation of lung cancer invasion and metastasis: Structural insights from a computational model
Q36331739	Role of non-native electrostatic interactions in the coupled folding and binding of PUMA with Mcl-1
Q112301065	Role of non-specific interactions in the phase-separation and maturation of macromolecules
Q114007454	Role of the reaction-structure coupling in temperature compensation of the KaiABC circadian rhythm
Q113308487	Role of water-bridged interactions in metal ion coupled protein allostery
Q30378767	Roles for Coincidence Detection in Coding Amplitude-Modulated Sounds.
Q113308872	Roles of mTOR in thoracic aortopathy understood by complex intracellular signaling interactions
Q60053977	Rosetta FunFolDes - A general framework for the computational design of functional proteins
Q112298625	Rosetta design with co-evolutionary information retains protein function
Q36399033	Rosetta:MSF: a modular framework for multi-state computational protein design
Q52716245	RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.
Q113309291	RosettaSurf—A surface-centric computational design approach
Q57285980	Rotation of sex combs in Drosophila melanogaster requires precise and coordinated spatio-temporal dynamics from forces generated by epithelial cells
Q114596580	Rule-based and stimulus-based cues bias auditory decisions via different computational and physiological mechanisms
Q21563497	Rule-based cell systems model of aging using feedback loop motifs mediated by stress responses
Q31026307	SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data
Q113309641	SAGE2Splice: Unmapped SAGE Tags Reveal Novel Splice Junctions
Q33242796	SAGE2Splice: unmapped SAGE tags reveal novel splice junctions
Q113308488	SALARECON connects the Atlantic salmon genome to growth and feed efficiency
Q35247564	SANTA: quantifying the functional content of molecular networks
Q41369813	SARAH Domain-Mediated MST2-RASSF Dimeric Interactions.
Q52622087	SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.
Q113309300	SCMFMDA: Predicting microRNA-disease associations based on similarity constrained matrix factorization
Q90970683	SCMarker: Ab initio marker selection for single cell transcriptome profiling
Q36146917	SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent
Q113308513	SCRaPL: A Bayesian hierarchical framework for detecting technical associates in single cell multiomics data
Q61449700	SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions
Q21563490	SHRiMP: accurate mapping of short color-space reads
Q58764572	SIG-DB: Leveraging homomorphic encryption to securely interrogate privately held genomic databases
Q58785268	SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks
Q35850720	SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
Q35952382	SMOG 2: A Versatile Software Package for Generating Structure-Based Models
Q113308674	SMetABF: A rapid algorithm for Bayesian GWAS meta-analysis with a large number of studies included
Q24811811	SNPdetector: a software tool for sensitive and accurate SNP detection
Q125344607	SPEACH_AF: Sampling protein ensembles and conformational heterogeneity with Alphafold2
Q113309050	SPF: A spatial and functional data analytic approach to cell imaging data
Q64103498	SPINDLE: End-to-end learning from EEG/EMG to extrapolate animal sleep scoring across experimental settings, labs and species
Q112703128	SPOROS: A pipeline to analyze DISE/6mer seed toxicity
Q34064152	STDP allows fast rate-modulated coding with Poisson-like spike trains
Q113309147	STDP and the distribution of preferred phases in the whisker system
Q28471682	STDP in a bistable synapse model based on CaMKII and associated signaling pathways
Q113309438	STDP in a bistable synapse model based on CaMKII and associated signaling pathways
Q35133415	STDP installs in Winner-Take-All circuits an online approximation to hidden Markov model learning
Q113308737	STENCIL: A web templating engine for visualizing and sharing life science datasets
Q28487858	STL-based analysis of TRAIL-induced apoptosis challenges the notion of type I/type II cell line classification
Q64261626	STRFs in primary auditory cortex emerge from masking-based statistics of natural sounds
Q113309193	SUITOR: Selecting the number of mutational signatures through cross-validation
Q36132377	SUMOFLUX: A Generalized Method for Targeted 13C Metabolic Flux Ratio Analysis
Q90390429	SVXplorer: Three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures
Q113308850	SWIFT: A deep learning approach to prediction of hypoxemic events in critically-Ill patients using SpO2 waveform prediction
Q34557996	Saccadic momentum and facilitation of return saccades contribute to an optimal foraging strategy
Q50062535	Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains.
Q112293004	Sample size calculation for phylogenetic case linkage
Q96121752	Sample-based modeling reveals bidirectional interplay between cell cycle progression and extrinsic apoptosis
Q113308407	Sample-efficient identification of high-dimensional antibiotic synergy with a normalized diagonal sampling design
Q104753968	Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk
Q21563518	Sampling realistic protein conformations using local structural bias
Q113309585	Sampling realistic protein conformations using local structural bias
Q28474850	Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes
Q112304313	Sarc-Graph: Automated segmentation, tracking, and analysis of sarcomeres in hiPSC-derived cardiomyocytes
Q113309491	Sarcomere lattice geometry influences cooperative myosin binding in muscle
Q33290825	Sarcomere lattice geometry influences cooperative myosin binding in muscle.
Q27330409	Sarcomeric pattern formation by actin cluster coalescence
Q113308683	SavvyCNV: Genome-wide CNV calling from off-target reads
Q51759474	Scabies in residential care homes: Modelling, inference and interventions for well-connected population sub-units.
Q46102755	Scaffolding the cup-shaped double membrane in autophagy
Q91899121	ScalaFlux: A scalable approach to quantify fluxes in metabolic subnetworks
Q35761037	Scalability of Asynchronous Networks Is Limited by One-to-One Mapping between Effective Connectivity and Correlations
Q36295173	Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion
Q28818540	Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks
Q112732864	Scalable and flexible inference framework for stochastic dynamic single-cell models
Q47215906	Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks
Q64056485	Scalable nonlinear programming framework for parameter estimation in dynamic biological system models
Q97650286	Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes
Q21145330	Scalable rule-based modelling of allosteric proteins and biochemical networks
Q94553075	Scale free topology as an effective feedback system
Q36215016	Scaling Properties of Dimensionality Reduction for Neural Populations and Network Models
Q56888310	Scaling up data curation using deep learning: An application to literature triage in genomic variation resources
Q90970576	Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort
Q93255601	Scedar: A scalable Python package for single-cell RNA-seq exploratory data analysis
Q114054811	Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithm
Q61453597	Scene complexity modulates degree of feedback activity during object detection in natural scenes
Q27321859	SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution
Q21145679	Scientific software development is not an oxymoron
Q64097215	Script of Scripts: A pragmatic workflow system for daily computational research
Q34765261	Scrutinizing MHC-I binding peptides and their limits of variation
Q28474246	Search algorithms as a framework for the optimization of drug combinations
Q64056490	Searching algorithm for Type IV effector proteins (S4TE) 2.0: Improved tools for Type IV effector prediction, analysis and comparison in proteobacteria
Q35082161	Searching for collective behavior in a large network of sensory neurons
Q113746487	Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
Q104059315	Searching through functional space reveals distributed visual, auditory, and semantic coding in the human brain
Q90970596	Seasonal influenza: Modelling approaches to capture immunity propagation
Q114054791	Seasonal variation in SARS-CoV-2 transmission in temperate climates: A Bayesian modelling study in 143 European regions
Q45122002	Seasonality in risk of pandemic influenza emergence
Q35238118	Seasonally dependent relationships between indicators of malaria transmission and disease provided by mathematical model simulations
Q34064176	Second order dimensionality reduction using minimum and maximum mutual information models
Q92074442	Securing the future of research computing in the biosciences
Q27319960	Segment-specific adhesion as a driver of convergent extension
Q113309105	Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns
Q35465465	Segmentation and tracking of adherens junctions in 3D for the analysis of epithelial tissue morphogenesis
Q113309091	Segmentation-Less, Automated, Vascular Vectorization
Q30422412	Segregating complex sound sources through temporal coherence
Q28395155	Segregation and crosstalk of D1 receptor-mediated activation of ERK in striatal medium spiny neurons upon acute administration of psychostimulants
Q25256006	Segregation of the brain into gray and white matter: a design minimizing conduction delays
Q57281637	Seizure pathways: A model-based investigation
Q28487869	Selection for replicases in protocells
Q113309375	Selection of stimulus parameters for enhancing slow wave sleep events with a neural-field theory thalamocortical model
Q28766367	Selection of target sites for mobile DNA integration in the human genome
Q33719497	Selection upon genome architecture: conservation of functional neighborhoods with changing genes
Q33320178	Selective adaptation in networks of heterogeneous populations: model, simulation, and experiment
Q24811425	Selective constraint on noncoding regions of hominid genomes
Q113309661	Selective constraint on noncoding regions of hominid genomes
Q57092749	Selective ion permeation involves complexation with carboxylates and lysine in a model human sodium channel
Q94057592	Selective recruitment of cortical neurons by electrical stimulation
Q28543593	Selectivity by small-molecule inhibitors of protein interactions can be driven by protein surface fluctuations
Q33363120	Self containment, a property of modular RNA structures, distinguishes microRNAs
Q33533285	Self versus environment motion in postural control
Q35751271	Self-Organization of Microcircuits in Networks of Spiking Neurons with Plastic Synapses
Q113309445	Self-assembly and DNA binding of the blocking factor in X Chromosome Inactivation
Q28471611	Self-assembly and DNA binding of the blocking factor in x chromosome inactivation
Q50000939	Self-crowding of AMPA receptors in the excitatory postsynaptic density can effectuate anomalous receptor sub-diffusion.
Q36264881	Self-organised criticality in the evolution of a thermodynamic model of rodent thermoregulatory huddling
Q35763428	Self-organization in Balanced State Networks by STDP and Homeostatic Plasticity
Q94606226	Self-organization in brain tumors: How cell morphology and cell density influence glioma pattern formation
Q113309062	Self-organization of a doubly asynchronous irregular network state for spikes and bursts
Q112283442	Self-organization of collective escape in pigeon flocks
Q64082040	Self-organization of conducting pathways explains electrical wave propagation in cardiac tissues with high fraction of non-conducting cells
Q27333991	Self-organization of muscle cell structure and function
Q33769742	Self-organized criticality in developing neuronal networks
Q57281633	Self-organized traffic via priority rules in leaf-cutting ants
Q27339264	Self-organizing mechanism for development of space-filling neuronal dendrites
Q41327256	Self-regulation strategy, feedback timing and hemodynamic properties modulate learning in a simulated fMRI neurofeedback environment.
Q33620978	Semantic prioritization of novel causative genomic variants
Q21563489	Semantic similarity for automatic classification of chemical compounds
Q21145359	Semantic similarity in biomedical ontologies
Q34699667	Semi-automated 3D leaf reconstruction and analysis of trichome patterning from light microscopic images
Q34987962	Semi-automated curation of metabolic models via flux balance analysis: a case study with Mycoplasma gallisepticum
Q28478991	Senescent cells in growing tumors: population dynamics and cancer stem cells
Q33332453	Sensing and integration of Erk and PI3K signals by Myc
Q35145272	Sensing membrane stresses by protein insertions
Q35008736	Sensitive detection of viral transcripts in human tumor transcriptomes
Q34510109	Sensitivity analysis of flux determination in heart by H₂ ¹⁸O -provided labeling using a dynamic Isotopologue model of energy transfer pathways
Q33290224	Sensitivity analysis of intracellular signaling pathway kinetics predicts targets for stem cell fate control
Q112557522	Sensor-based localization of epidemic sources on human mobility networks
Q27317586	Sensorimotor Model of Obstacle Avoidance in Echolocating Bats
Q34481816	Sensorimotor learning biases choice behavior: a learning neural field model for decision making
Q91796439	Sensorimotor maps can be dynamically calibrated using an adaptive-filter model of the cerebellum
Q35976558	Sensory Agreement Guides Kinetic Energy Optimization of Arm Movements during Object Manipulation
Q113238611	Sensory coding and contrast invariance emerge from the control of plastic inhibition over emergent selectivity
Q34961691	Sensory information and encounter rates of interacting species
Q36407321	Sensory noise predicts divisive reshaping of receptive fields
Q113309095	Separable actions of acetylcholine and noradrenaline on neuronal ensemble formation in hippocampal CA3 circuits
Q36140784	Separating Timing, Movement Conditions and Individual Differences in the Analysis of Human Movement
Q35643204	SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps
Q112558847	Sequence deeper without sequencing more: Bayesian resolution of ambiguously mapped reads
Q113308547	Sequence dependence of transient Hoogsteen base pairing in DNA
Q36331982	Sequence dependency of canonical base pair opening in the DNA double helix.
Q48044016	Sequence determinants of protein phase behavior from a coarse-grained model
Q41935373	Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity.
Q113308452	Sequence learning, prediction, and replay in networks of spiking neurons
Q33760996	Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction
Q33334075	Sequence similarity network reveals common ancestry of multidomain proteins
Q90797112	Sequence specificity despite intrinsic disorder: How a disease-associated Val/Met polymorphism rearranges tertiary interactions in a long disordered protein
Q33769118	Sequence-based prediction for vaccine strain selection and identification of antigenic variability in foot-and-mouth disease virus
Q95845672	Sequence-based prediction of protein binding mode landscapes
Q47128061	Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations
Q92718221	Sequential exploration in the Iowa gambling task: Validation of a new computational model in a large dataset of young and old healthy participants
Q61814649	Sequential infection experiments for quantifying innate and adaptive immunity during influenza infection
Q30354794	Sequential inference as a mode of cognition and its correlates in fronto-parietal and hippocampal brain regions
Q25257241	Seriation in paleontological data using markov chain Monte Carlo methods
Q113309415	Serotonin, Inhibition and Negative Mood
Q33318080	Serotonin, inhibition, and negative mood
Q28727328	Seven Years; It's Time for a Change
Q90665756	Seven quick tips for analysis scripts in neuroimaging
Q113308715	Shape analysis of gamma rhythm supports a superlinear inhibitory regime in an inhibition-stabilized network
Q34945289	Shape similarity, better than semantic membership, accounts for the structure of visual object representations in a population of monkey inferotemporal neurons
Q28474347	Shape, size, and robustness: feasible regions in the parameter space of biochemical networks
Q98938945	Shape-to-graph mapping method for efficient characterization and classification of complex geometries in biological images
Q36102582	Shaping Neural Circuits by High Order Synaptic Interactions
Q35775981	Shaping Neuronal Network Activity by Presynaptic Mechanisms
Q27337906	Shaping embodied neural networks for adaptive goal-directed behavior
Q27330296	Shaping the dynamics of a bidirectional neural interface
Q52370976	Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.
Q34845004	Shared protein complex subunits contribute to explaining disrupted co-occurrence
Q64993344	Shared spatiotemporal category representations in biological and artificial deep neural networks.
Q28647521	Sharing and Specificity of Co-expression Networks across 35 Human Tissues
Q35067160	Sharpness of spike initiation in neurons explained by compartmentalization
Q30455439	Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data
Q34126205	Short conduction delays cause inhibition rather than excitation to favor synchrony in hybrid neuronal networks of the entorhinal cortex
Q28480594	Short term synaptic depression imposes a frequency dependent filter on synaptic information transfer
Q27319473	Short-range guiding can result in the formation of circular aggregates in myxobacteria populations
Q36368010	Short-term activity cycles impede information transmission in ant colonies
Q113308652	Short-term and long-term epidemiological impacts of sustained vector control in various dengue endemic settings: A modelling study
Q99720023	Short-term depression and long-term plasticity together tune sensitive range of synaptic plasticity
Q33332594	Short-term memory trace in rapidly adapting synapses of inferior temporal cortex
Q61807815	Short-term synaptic depression can increase the rate of information transfer at a release site
Q100757592	Short-wavelength-sensitive 2 (Sws2) visual photopigment models combined with atomistic molecular simulations to predict spectral peaks of absorbance
Q28483028	Shrinking the metabolic solution space using experimental datasets
Q33747546	Shunting inhibition controls the gain modulation mediated by asynchronous neurotransmitter release in early development
Q113309215	SiGMoiD: A super-statistical generative model for binary data
Q113746463	Signal neutrality, scalar property, and collapsing boundaries as consequences of a learned multi-timescale strategy
Q25257731	Signal processing in the TGF-beta superfamily ligand-receptor network
Q113309658	Signal processing in the TGF-β superfamily ligand-receptor network
Q33300127	Signal propagation in proteins and relation to equilibrium fluctuations
Q112614536	Signal-to-signal neural networks for improved spike estimation from calcium imaging data
Q28551022	Signaling and Adaptation Modulate the Dynamics of the Photosensoric Complex of Natronomonas pharaonis
Q35208287	Signaling domain of Sonic Hedgehog as cannibalistic calcium-regulated zinc-peptidase
Q33412397	Signaling logic of activity-triggered dendritic protein synthesis: an mTOR gate but not a feedback switch
Q97677930	Signaling models for dopamine-dependent temporal contiguity in striatal synaptic plasticity
Q34629089	Signaling pathways involved in striatal synaptic plasticity are sensitive to temporal pattern and exhibit spatial specificity
Q27332370	Signalling and the evolution of cooperative foraging in dynamic environments
Q28473485	Signatures of arithmetic simplicity in metabolic network architecture
Q42701683	Signatures of criticality arise from random subsampling in simple population models
Q34568149	Significance analysis of prognostic signatures
Q34085579	Significance of input correlations in striatal function
Q100997408	Significance of trends in gait dynamics
Q47100621	Significant associations between driver gene mutations and DNA methylation alterations across many cancer types.
Q28486299	Significantly improved HIV inhibitor efficacy prediction employing proteochemometric models generated from antivirogram data
Q33337142	Silent synapses, LTP, and the indirect parallel-fibre pathway: computational consequences of optimal cerebellar noise-processing
Q33701593	Similar impact of CD8+ T cell responses on early virus dynamics during SIV infections of rhesus macaques and sooty mangabeys
Q112268452	Similar sensorimotor transformations control balance during standing and walking
Q99237421	Similarities and differences in spatial and non-spatial cognitive maps
Q35970390	Similarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes.
Q33352705	Similarity queries for temporal toxicogenomic expression profiles
Q35866575	Simple Plans or Sophisticated Habits? State, Transition and Learning Interactions in the Two-Step Task
Q36347250	Simple biochemical networks allow accurate sensing of multiple ligands with a single receptor.
Q34285912	Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection
Q113308694	Simple model for encoding natural images by retinal ganglion cells with nonlinear spatial integration
Q104514796	Simple models including energy and spike constraints reproduce complex activity patterns and metabolic disruptions
Q90970667	Simple models of quantitative firing phenotypes in hippocampal neurons: Comprehensive coverage of intrinsic diversity
Q35018008	Simple topological features reflect dynamics and modularity in protein interaction networks
Q21563523	SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework
Q113308601	Simulated actin reorganization mediated by motor proteins
Q34693122	Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts.
Q113178792	Simulated poaching affects global connectivity and efficiency in social networks of African savanna elephants—An exemplar of how human disturbance impacts group-living species
Q113309588	Simulating Properties of In Vitro Epithelial Cell Morphogenesis
Q27324271	Simulating cortical development as a self constructing process: a novel multi-scale approach combining molecular and physical aspects
Q98614484	Simulating flow induced migration in vascular remodelling
Q28473754	Simulating microdosimetry in a virtual hepatic lobule
Q33259821	Simulating properties of in vitro epithelial cell morphogenesis
Q27320199	Simulating the complex cell design of Trypanosoma brucei and its motility
Q27333898	Simulating the mammalian blastocyst--molecular and mechanical interactions pattern the embryo
Q35953946	Simulation and Theory of Antibody Binding to Crowded Antigen-Covered Surfaces
Q113308659	Simulation atomic force microscopy for atomic reconstruction of biomolecular structures from resolution-limited experimental images
Q48515073	Simulation enabled search for explanatory mechanisms of the fracture healing process.
Q92697475	Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity
Q30000849	Simulation of molecular data under diverse evolutionary scenarios
Q64986891	Simulation of single-protein nanopore sensing shows feasibility for whole-proteome identification.
Q28478313	Simulation of the undiseased human cardiac ventricular action potential: model formulation and experimental validation
Q28546518	Simulation predicts IGFBP2-HIF1α interaction drives glioblastoma growth
Q35866373	Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics.
Q60053976	Simulations of blood as a suspension predicts a depth dependent hematocrit in the circulation throughout the cerebral cortex
Q113309245	Simulations of dynamically cross-linked actin networks: Morphology, rheology, and hydrodynamic interactions
Q21090159	Simulations of long-term community dynamics in coral reefs--how perturbations shape trajectories
Q113308437	Simulations of tumor growth and response to immunotherapy by coupling a spatial agent-based model with a whole-patient quantitative systems pharmacology model
Q55331834	Simulations to benchmark time-varying connectivity methods for fMRI.
Q33564411	Simultaneous clustering of multiple gene expression and physical interaction datasets
Q28476223	Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components
Q34743718	Simultaneous identification of multiple driver pathways in cancer
Q33703514	Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
Q94606038	Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures
Q31086996	Single nucleotide polymorphisms can create alternative polyadenylation signals and affect gene expression through loss of microRNA-regulation
Q34145659	Single sample expression-anchored mechanisms predict survival in head and neck cancer
Q35996009	Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes
Q113309616	Single-Molecule Dynamics Reveals the Cooperative Binding-Folding in Bio-molecular Recognition
Q112609702	Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts
Q113308418	Single-cell network biology characterizes cell type gene regulation for drug repurposing and phenotype prediction in Alzheimer’s disease
Q33250076	Single-molecule dynamics reveals cooperative binding-folding in protein recognition
Q36366947	Single-molecule protein identification by sub-nanopore sensors
Q35661415	Site-Specific Phosphorylation of VEGFR2 Is Mediated by Receptor Trafficking: Insights from a Computational Model
Q112281151	SiteMotif: A graph-based algorithm for deriving structural motifs in Protein Ligand binding sites
Q92638313	Size and structure of the sequence space of repeat proteins
Q35399878	Size does matter: an integrative in vivo-in silico approach for the treatment of critical size bone defects
Q113308438	Size regulation of multiple organelles competing for a limiting subunit pool
Q33369061	Sizing up allometric scaling theory
Q104069283	SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes
Q27320118	Sliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA models
Q112638403	Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor
Q27334836	Slope-based stochastic resonance: how noise enables phasic neurons to encode slow signals
Q36359596	Slow diffusive dynamics in a chaotic balanced neural network.
Q35165585	Slow feature analysis on retinal waves leads to V1 complex cells
Q113309138	Slow manifolds within network dynamics encode working memory efficiently and robustly
Q33617840	Slow noise in the period of a biological oscillator underlies gradual trends and abrupt transitions in phasic relationships in hybrid neural networks
Q113308785	Slow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts
Q33543177	Slower visuomotor corrections with unchanged latency are consistent with optimal adaptation to increased endogenous noise in the elderly
Q35112640	Slowness and sparseness have diverging effects on complex cell learning
Q21145660	Slowness and sparseness lead to place, head-direction, and spatial-view cells
Q42046373	Slowness: an objective for spike-timing-dependent plasticity?
Q29994423	Sm/Lsm genes provide a glimpse into the early evolution of the spliceosome
Q28752303	Small RNAs originated from pseudogenes: cis- or trans-acting?
Q33308254	Small regulatory RNAs may sharpen spatial expression patterns
Q108792401	Small subpopulations of β-cells do not drive islet oscillatory [Ca2+] dynamics via gap junction communication
Q27332448	Smart swarms of bacteria-inspired agents with performance adaptable interactions
Q89594293	SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases
Q27335761	Smoothing of, and parameter estimation from, noisy biophysical recordings
Q34510133	SnIPRE: selection inference using a Poisson random effects model
Q28472510	SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models
Q28607784	Social Feedback and the Emergence of Rank in Animal Society
Q113309421	Social Interactions in Myxobacterial Swarming
Q35903466	Social Norms of Cooperation in Small-Scale Societies
Q90356299	Social behavioural adaptation in Autism
Q21145364	Social contact networks and disease eradicability under voluntary vaccination
Q64235588	Social dynamics modeling of chrono-nutrition
Q64243836	Social evolution under demographic stochasticity
Q27331373	Social interaction, noise and antibiotic-mediated switches in the intestinal microbiota
Q33312847	Social interactions in myxobacterial swarming
Q97566779	Socioeconomic bias in influenza surveillance
Q35200657	Soft skills: an important asset acquired from organizing regional student group activities
Q34531174	Soft-bound synaptic plasticity increases storage capacity
Q34945230	Software for computing and annotating genomic ranges
Q27334340	Solving navigational uncertainty using grid cells on robots
Q55209147	Solving the RNA design problem with reinforcement learning.
Q36409137	Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle
Q64069345	Soma-axon coupling configurations that enhance neuronal coincidence detection
Q96646988	Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data
Q35913608	Somato-dendritic Synaptic Plasticity and Error-backpropagation in Active Dendrites
Q35488565	Some work and some play: microscopic and macroscopic approaches to labor and leisure
Q27335009	Somitogenesis clock-wave initiation requires differential decay and multiple binding sites for clock protein
Q61804791	Sour grapes and sweet victories: How actions shape preferences
Q90942911	SourceSet: A graphical model approach to identify primary genes in perturbed biological pathways
Q35875319	Sources of Variability in a Synthetic Gene Oscillator.
Q47554824	SozRank: A new approach for localizing the epileptic seizure onset zone
Q33463453	SpaK/SpaR two-component system characterized by a structure-driven domain-fusion method and in vitro phosphorylation studies
Q28554794	Sparse Regression Based Structure Learning of Stochastic Reaction Networks from Single Cell Snapshot Time Series
Q35581990	Sparse and compositionally robust inference of microbial ecological networks
Q113309366	Sparse balance: Excitatory-inhibitory networks with small bias currents and broadly distributed synaptic weights
Q30465659	Sparse codes for speech predict spectrotemporal receptive fields in the inferior colliculus
Q34722519	Sparse coding can predict primary visual cortex receptive field changes induced by abnormal visual input
Q34979327	Sparse coding models can exhibit decreasing sparseness while learning sparse codes for natural images
Q113308791	Sparse connectivity for MAP inference in linear models using sister mitral cells
Q92342822	Sparse discriminative latent characteristics for predicting cancer drug sensitivity from genomic features
Q27324673	Sparse distributed representation of odors in a large-scale olfactory bulb circuit
Q34085602	Sparse gamma rhythms arising through clustering in adapting neuronal networks
Q41976489	Sparsity and compressed coding in sensory systems.
Q34611056	Spartan: a comprehensive tool for understanding uncertainty in simulations of biological systems
Q125952026	Spatial Configurations of 3D Extracellular Matrix Collagen Density and Anisotropy Simultaneously Guide Angiogenesis
Q35901811	Spatial Metrics of Tumour Vascular Organisation Predict Radiation Efficacy in a Computational Model.
Q27322422	Spatial Transmission of 2009 Pandemic Influenza in the US
Q21145669	Spatial acuity and prey detection in weakly electric fish
Q27335171	Spatial analysis of expression patterns predicts genetic interactions at the mid-hindbrain boundary
Q27319519	Spatial and functional heterogeneities shape collective behavior of tumor-immune networks
Q110770985	Spatial and temporal invasion dynamics of the 2014-2017 Zika and chikungunya epidemics in Colombia
Q97893974	Spatial and temporal patterns of nitric oxide diffusion and degradation drive emergent cerebrovascular dynamics
Q27335092	Spatial and topological organization of DNA chains induced by gene co-localization
Q21145368	Spatial bistability generates hunchback expression sharpness in the Drosophila embryo
Q64083794	Spatial clustering and common regulatory elements correlate with coordinated gene expression
Q101154926	Spatial considerations in the resolution of inflammation: Elucidating leukocyte interactions via an experimentally-calibrated agent-based model
Q113309635	Spatial control of signal transduction activation: a brownian motion model of receptor dimerization on a spherical cell surface
Q38849510	Spatial dynamics and control of a crop pathogen with mixed-mode transmission
Q113308586	Spatial dynamics of feedback and feedforward regulation in cell lineages
Q125987491	Spatial dynamics of malaria transmission
Q39311600	Spatial dynamics of synthetic microbial mutualists and their parasites
Q33650015	Spatial generalization in operant learning: lessons from professional basketball
Q28740691	Spatial guilds in the Serengeti food web revealed by a Bayesian group model
Q34212428	Spatial heterogeneity and peptide availability determine CTL killing efficiency in vivo.
Q113238616	Spatial heterogeneity enhance robustness of large multi-species ecosystems
Q28544732	Spatial heterogeneity in drug concentrations can facilitate the emergence of resistance to cancer therapy
Q21145324	Spatial learning and action planning in a prefrontal cortical network model
Q52328160	Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction.
Q113309003	Spatial modelling for population replacement of mosquito vectors at continental scale
Q92001300	Spatial neuronal synchronization and the waveform of oscillations: Implications for EEG and MEG
Q41154504	Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model
Q34629083	Spatial pattern dynamics of 3D stem cell loss of pluripotency via rules-based computational modeling
Q27334263	Spatial pattern switching enables cyclic evolution in spatial epidemics
Q52610208	Spatial regularity control of phyllotaxis pattern generated by the mutual interaction between auxin and PIN1.
Q28469196	Spatial regulation and the rate of signal transduction activation
Q36278392	Spatial separation of two different pathways accounting for the generation of calcium signals in astrocytes
Q27335074	Spatial simulations of myxobacterial development
Q34005275	Spatial stereoresolution for depth corrugations may be set in primary visual cortex
Q27324307	Spatial stochastic dynamics enable robust cell polarization
Q64232561	Spatial synchronization codes from coupled rate-phase neurons
Q92251713	Spatially constrained tumour growth affects the patterns of clonal selection and neutral drift in cancer genomic data
Q42828872	Spatially distributed dendritic resonance selectively filters synaptic input
Q113308835	Spatially distributed infection increases viral load in a computational model of SARS-CoV-2 lung infection
Q27329566	Spatially pooled contrast responses predict neural and perceptual similarity of naturalistic image categories
Q113308546	Spatially resolved in silico modeling of NKG2D signaling kinetics suggests a key role of NKG2D and Vav1 Co-clustering in generating natural killer cell activation
Q113309326	Spatially resolved simulations of the spread of COVID-19 in three European countries
Q27318590	Spatio-temporal Dynamics and Mechanisms of Stress Granule Assembly
Q33954343	Spatio-temporal credit assignment in neuronal population learning
Q33466776	Spatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules.
Q28544748	Spatio-temporal model of endogenous ROS and raft-dependent WNT/beta-catenin signaling driving cell fate commitment in human neural progenitor cells
Q113309309	Spatio-temporal modeling of the crowding conditions and metabolic variability in microbial communities
Q27322901	Spatio-temporal simulation of first pass drug perfusion in the liver
Q36216001	Spatiotemporal Analysis of the 2014 Ebola Epidemic in West Africa
Q36246153	Spatiotemporal Feedback and Network Structure Drive and Encode Caenorhabditis elegans Locomotion.
Q38374156	Spatiotemporal computations of an excitable and plastic brain: neuronal plasticity leads to noise-robust and noise-constructive computations
Q21092582	Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana
Q42369646	Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer
Q108126799	Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships
Q28748240	Specialization can drive the evolution of modularity
Q21092512	Specialization of gene expression during mouse brain development
Q38696630	Speciation trajectories in recombining bacterial species
Q114054777	Species abundance correlations carry limited information about microbial network interactions
Q30873618	Species tree inference by minimizing deep coalescences
Q33513959	Specific entrainment of mitral cells during gamma oscillation in the rat olfactory bulb
Q47916111	Specific excitatory connectivity for feature integration in mouse primary visual cortex.
Q113309541	Specificity and Evolvability in Eukaryotic Protein Interaction Networks
Q42151102	Specificity and affinity quantification of flexible recognition from underlying energy landscape topography
Q33274191	Specificity and evolvability in eukaryotic protein interaction networks
Q113308727	Specificity of Loxosceles α clade phospholipase D enzymes for choline-containing lipids: Role of a conserved aromatic cage
Q34335478	Spectral analysis of input spike trains by spike-timing-dependent plasticity.
Q34350886	Spectral signatures of reorganised brain networks in disorders of consciousness
Q90796967	Spectral tuning of adaptation supports coding of sensory context in auditory cortex
Q111859492	Spectrally specific temporal analyses of spike-train responses to complex sounds: A unifying framework
Q35082152	Speed controls in translating secretory proteins in eukaryotes--an evolutionary perspective
Q102070866	Speed of phototransduction in the microvillus regulates the accuracy and bandwidth of the rhabdomeric photoreceptor
Q34085589	Speed, sensitivity, and bistability in auto-activating signaling circuits
Q33920995	Speed/accuracy trade-off between the habitual and the goal-directed processes
Q34426326	Speeded reaching movements around invisible obstacles
Q35587537	Speeding up ecological and evolutionary computations in R; essentials of high performance computing for biologists
Q113309320	Sperm migration in the genital tract—In silico experiments identify key factors for reproductive success
Q50062518	Spike and burst coding in thalamocortical relay cells.
Q64105011	Spike burst-pause dynamics of Purkinje cells regulate sensorimotor adaptation
Q113309424	Spike correlations in a songbird agree with a simple Markov population model
Q28755763	Spike correlations in a songbird agree with a simple markov population model
Q34987956	Spike triggered covariance in strongly correlated gaussian stimuli
Q34961724	Spike triggered hormone secretion in vasopressin cells; a model investigation of mechanism and heterogeneous population function
Q28552341	Spike-Based Bayesian-Hebbian Learning of Temporal Sequences
Q30405256	Spike-Triggered Covariance Analysis Reveals Phenomenological Diversity of Contrast Adaptation in the Retina
Q34426365	Spike-based decision learning of Nash equilibria in two-player games
Q33838199	Spike-based population coding and working memory
Q30972868	Spike-based reinforcement learning in continuous state and action space: when policy gradient methods fail
Q30440116	Spike-threshold adaptation predicted by membrane potential dynamics in vivo
Q21145311	Spike-timing dependence of structural plasticity explains cooperative synapse formation in the neocortex
Q33680632	Spike-timing theory of working memory
Q30478645	Spike-timing-based computation in sound localization
Q28469521	Spikelets in Pyramidal Neurons: Action Potentials Initiated in the Axon Initial Segment That Do Not Activate the Soma
Q96589899	Spiking network optimized for word recognition in noise predicts auditory system hierarchy
Q35418132	Spinal mechanisms may provide a combination of intermittent and continuous control of human posture: predictions from a biologically based neuromusculoskeletal model
Q34311519	Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy
Q28487725	Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks
Q35907220	Spontaneous Decoding of the Timing and Content of Human Object Perception from Cortical Surface Recordings Reveals Complementary Information in the Event-Related Potential and Broadband Spectral Change
Q33778865	Spontaneous cortical activity is transiently poised close to criticality
Q28483741	Spontaneous excitation patterns computed for axons with injury-like impairments of sodium channels and Na/K pumps
Q33426386	Spontaneous local gamma oscillation selectively enhances neural network responsiveness
Q27334938	Spontaneous quaternary and tertiary T-R transitions of human hemoglobin in molecular dynamics simulation
Q28474052	Spontaneous reaction silencing in metabolic optimization
Q40072212	Spread of hospital-acquired infections: A comparison of healthcare networks.
Q33325898	Src kinase conformational activation: thermodynamics, pathways, and mechanisms
Q35944926	Stability and Competition in Multi-spike Models of Spike-Timing Dependent Plasticity
Q27324806	Stability and responsiveness in a self-organized living architecture
Q35208117	Stability curve prediction of homologous proteins using temperature-dependent statistical potentials
Q35398714	Stability depends on positive autoregulation in Boolean gene regulatory networks
Q36236273	Stability of Cross-Feeding Polymorphisms in Microbial Communities
Q35952481	Stability of Ensemble Models Predicts Productivity of Enzymatic Systems
Q35685984	Stability of Neuronal Networks with Homeostatic Regulation.
Q91800405	Stability of spontaneous, correlated activity in mouse auditory cortex
Q64101012	Stability of working memory in continuous attractor networks under the control of short-term plasticity
Q34071351	Stability properties of underdominance in finite subdivided populations
Q41456202	Stabilization of diastolic calcium signal via calcium pump regulation of complex local calcium releases and transient decay in a computational model of cardiac pacemaker cell with individual release channels
Q47578887	Stabilizing patterns in time: Neural network approach.
Q27335349	Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo
Q94586873	StanDep: Capturing transcriptomic variability improves context-specific metabolic models
Q34611070	Standard anatomical and visual space for the mouse retina: computational reconstruction and transformation of flattened retinae with the Retistruct package
Q94553079	Standard multiscale entropy reflects neural dynamics at mismatched temporal scales: What's signal irregularity got to do with it?
Q28484153	Standing genetic variation and the evolution of drug resistance in HIV
Q34574815	Starling flock networks manage uncertainty in consensus at low cost
Q33400311	State based model of long-term potentiation and synaptic tagging and capture
Q57472219	State dependence of stimulus-induced variability tuning in macaque MT
Q113309012	State transitions through inhibitory interneurons in a cortical network model
Q92440350	State-aware detection of sensory stimuli in the cortex of the awake mouse
Q30000858	State-space analysis of time-varying higher-order spike correlation for multiple neural spike train data
Q47851725	Static length changes of cochlear outer hair cells can tune low-frequency hearing.
Q36129821	Statistical Analysis of Tract-Tracing Experiments Demonstrates a Dense, Complex Cortical Network in the Mouse
Q33632185	Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei
Q96827534	Statistical analysis of 3D localisation microscopy images for quantification of membrane protein distributions in a platelet clot model
Q28534714	Statistical analysis of molecular signal recording
Q35399827	Statistical computations underlying the dynamics of memory updating
Q27336135	Statistical dynamics of flowing red blood cells by morphological image processing
Q34005264	Statistical inference for multi-pathogen systems
Q91800196	Statistical inference in ensemble modeling of cellular metabolism
Q61453594	Statistical investigations of protein residue direct couplings
Q27319932	Statistical mechanics provides novel insights into microtubule stability and mechanism of shrinkage
Q33429043	Statistical methods for detecting differentially abundant features in clinical metagenomic samples
Q33325891	Statistical modeling of transcription factor binding affinities predicts regulatory interactions
Q31151639	Statistical resolution of ambiguous HLA typing data
Q113309335	Statistical tests for intra-tumour clonal co-occurrence and exclusivity
Q33506607	Statistical use of argonaute expression and RISC assembly in microRNA target identification
Q91603701	Statistics of correlated percolation in a bacterial community
Q34619958	Statistics of knots, geometry of conformations, and evolution of proteins
Q33415445	Steady-state kinetic modeling constrains cellular resting states and dynamic behavior
Q113309026	Steady-state measures of visual suppression
Q33739444	SteadyCom: Predicting microbial abundances while ensuring community stability
Q24810744	Stealth proteins: in silico identification of a novel protein family rendering bacterial pathogens invisible to host immune defense
Q35513572	SteatoNet: the first integrated human metabolic model with multi-layered regulation to investigate liver-associated pathologies
Q27324610	Steered molecular dynamics simulations of a type IV pilus probe initial stages of a force-induced conformational transition
Q58090912	Steered molecular dynamics simulations reveal critical residues for (un)binding of substrates, inhibitors and a product to the malarial M1 aminopeptidase
Q28547894	Steering Evolution with Sequential Therapy to Prevent the Emergence of Bacterial Antibiotic Resistance
Q33486473	Stem cell proliferation and quiescence--two sides of the same coin
Q37380426	Steps in the bacterial flagellar motor
Q28545816	Stepwise catalytic mechanism via short-lived intermediate inferred from combined QM/MM MERP and PES calculations on retaining glycosyltransferase ppGalNAcT2
Q113309428	Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability
Q33309456	Stereochemical criteria for prediction of the effects of proline mutations on protein stability
Q28468527	Stereotypical Escape Behavior in Caenorhabditis elegans Allows Quantification of Effective Heat Stimulus Level
Q33267900	Stern-judging: A simple, successful norm which promotes cooperation under indirect reciprocity
Q113308714	Stimulating at the right time to recover network states in a model of the cortico-basal ganglia-thalamic circuit
Q36128024	Stimulation-Based Control of Dynamic Brain Networks
Q28472617	Stimulus design for model selection and validation in cell signaling
Q113308435	Stimulus presentation can enhance spiking irregularity across subcortical and cortical regions
Q36217515	Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex
Q95284897	Stimulus-choice (mis)alignment in primate area MT
Q34629073	Stimulus-dependent maximum entropy models of neural population codes.
Q33967918	Stimulus-dependent state transition between synchronized oscillation and randomly repetitive burst in a model cerebellar granular layer
Q36306133	Stimulus-specific adaptation in a recurrent network model of primary auditory cortex
Q113309397	Stochastic Differential Equation Model for Cerebellar Granule Cell Excitability
Q35661806	Stochastic Dynamics Underlying Cognitive Stability and Flexibility
Q27318039	Stochastic Regulation of her1/7 Gene Expression Is the Source of Noise in the Zebrafish Somite Clock Counteracted by Notch Signalling
Q28554812	Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist
Q28552548	Stochastic Simulation of Biomolecular Networks in Dynamic Environments
Q101154963	Stochastic colonization of hosts with a finite lifespan can drive individual host microbes out of equilibrium
Q42145540	Stochastic computations in cortical microcircuit models
Q28480455	Stochastic de-repression of Rhodopsins in single photoreceptors of the fly retina
Q34079133	Stochastic delay accelerates signaling in gene networks
Q33332458	Stochastic differential equation model for cerebellar granule cell excitability
Q30912177	Stochastic drift in mitochondrial DNA point mutations: a novel perspective ex silico
Q96032247	Stochastic dynamics of Francisella tularensis infection and replication
Q35238210	Stochastic dynamics of interacting haematopoietic stem cell niche lineages
Q113308411	Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway
Q33658662	Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes
Q28473038	Stochastic model of integrin-mediated signaling and adhesion dynamics at the leading edges of migrating cells
Q113309223	Stochastic model of lignocellulosic material saccharification
Q36384470	Stochastic modeling of expression kinetics identifies messenger half-lives and reveals sequential waves of co-ordinated transcription and decay
Q30300547	Stochastic modeling of mouse motor activity under deep brain stimulation: the extraction of arousal information
Q91805471	Stochastic modeling reveals kinetic heterogeneity in post-replication DNA methylation
Q64082029	Stochastic neural field model of stimulus-dependent variability in cortical neurons
Q58884343	Stochastic noise and synchronisation during Dictyostelium aggregation make cAMP oscillations robust
Q30837906	Stochastic noise and synchronisation during dictyostelium aggregation make cAMP oscillations robust
Q89938806	Stochastic optimal open-loop control as a theory of force and impedance planning via muscle co-contraction
Q96770588	Stochastic ordering of complexoform protein assembly by genetic circuits
Q40046362	Stochastic principles governing alternative splicing of RNA.
Q90314909	Stochastic resonance enhances the rate of evidence accumulation during combined brain stimulation and perceptual decision-making
Q55429672	Stochastic shielding and edge importance for Markov chains with timescale separation.
Q33283724	Stochastic simulations on the reliability of action potential propagation in thin axons
Q28483749	Stochastic simulations suggest that HIV-1 survives close to its error threshold
Q33815539	Stochastic theory of early viral infection: continuous versus burst production of virions
Q30858460	Stochastically gating ion channels enable patterned spike firing through activity-dependent modulation of spike probability
Q92205003	Stochasticity of replication forks' speeds plays a key role in the dynamics of DNA replication
Q31129063	Stochasticity, bistability and the wisdom of crowds: a model for associative learning in genetic regulatory networks
Q36154863	Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction
Q52666816	Stoichiometric balance of protein copy numbers is measurable and functionally significant in a protein-protein interaction network for yeast endocytosis.
Q34262963	Storage of correlated patterns in standard and bistable Purkinje cell models
Q28553405	Strain Mediated Adaptation Is Key for Myosin Mechanochemistry: Discovering General Rules for Motor Activity
Q113308502	Strain design optimization using reinforcement learning
Q60049101	Strategies and opportunities for promoting bioinformatics in Zimbabwe
Q30850604	Strategies for controlling non-transmissible infection outbreaks using a large human movement data set
Q33316818	Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing events
Q34481792	Strategy diversity stabilizes mutualism through investment cycles, phase polymorphism, and spatial bubbles
Q47135190	Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq
Q27323326	Stress and strain provide positional and directional cues in development
Q113308859	Stress generation, relaxation and size control in confined tumor growth
Q27329805	Stress-induced impairment of a working memory task: role of spiking rate and spiking history predicted discharge
Q41200966	Stress-induced mutagenesis: Stress diversity facilitates the persistence of mutator genes
Q92015950	Striatal network modeling in Huntington's Disease
Q90037850	Striated myocyte structural integrity: Automated analysis of sarcomeric z-discs
Q113309598	Striking Similarities in the Genomic Distribution of Tandemly Arrayed Genes in Arabidopsis and Rice
Q28469041	Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
Q33366471	Stroke rehabilitation reaches a threshold
Q28751986	Strong inference for systems biology
Q102070857	Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus
Q27317945	Structural Bridges through Fold Space
Q27319133	Structural Conversion of Aβ17-42 Peptides from Disordered Oligomers to U-Shape Protofilaments via Multiple Kinetic Pathways
Q113309524	Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage
Q36013275	Structural Determinants of Misfolding in Multidomain Proteins
Q113309673	Structural Evolution of the Protein Kinase-Like Superfamily
Q36177104	Structural Identifiability of Dynamic Systems Biology Models.
Q35826136	Structural Insights into Separase Architecture and Substrate Recognition through Computational Modelling of Caspase-Like and Death Domains
Q28546092	Structural Model of RNA Polymerase II Elongation Complex with Complete Transcription Bubble Reveals NTP Entry Routes
Q113309571	Structural Modeling of Protein Interactions by Analogy: Application to PSD-95
Q27318375	Structural Refinement of Proteins by Restrained Molecular Dynamics Simulations with Non-interacting Molecular Fragments
Q33455556	Structural adaptation and heterogeneity of normal and tumor microvascular networks
Q34506095	Structural and Energetic Characterization of the Ankyrin Repeat Protein Family
Q35922301	Structural and Functional Characterization of a Caenorhabditis elegans Genetic Interaction Network within Pathways
Q58549084	Structural and dynamic basis of substrate permissiveness in hydroxycinnamoyltransferase (HCT)
Q27330455	Structural and dynamic requirements for optimal activity of the essential bacterial enzyme dihydrodipicolinate synthase
Q112290278	Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants
Q92114870	Structural and molecular insight into the pH-induced low-permeability of the voltage-gated potassium channel Kv1.2 through dewetting of the water cavity
Q33385988	Structural and thermodynamic approach to peptide immunogenicity
Q30372281	Structural biology by NMR: structure, dynamics, and interactions.
Q30388562	Structural characteristics of novel protein folds
Q34181296	Structural consensus among antibodies defines the antigen binding site
Q28537786	Structural control of metabolic flux
Q28469177	Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage
Q104791383	Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology
Q34845322	Structural disorder provides increased adaptability for vesicle trafficking pathways
Q89759205	Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice
Q34299329	Structural drift: the population dynamics of sequential learning
Q112565358	Structural dynamics of SARS-CoV-2 nucleocapsid protein induced by RNA binding
Q21145694	Structural evolution of the protein kinase-like superfamily
Q46268393	Structural host-microbiota interaction networks
Q27322988	Structural insights into E. coli porphobilinogen deaminase during synthesis and exit of 1-hydroxymethylbilane
Q28484772	Structural insights into the inhibition of actin-capping protein by interactions with phosphatidic acid and phosphatidylinositol (4,5)-bisphosphate
Q28478308	Structural insights into the inhibition of cytosolic 5'-nucleotidase II (cN-II) by ribonucleoside 5'-monophosphate analogues
Q30571632	Structural investigation of MscL gating using experimental data and coarse grained MD simulations
Q30159569	Structural modeling of protein interactions by analogy: application to PSD-95
Q55210401	Structural organization and energy storage in crosslinked actin assemblies.
Q21092522	Structural properties of the Caenorhabditis elegans neuronal network
Q33302932	Structural reorganisation and potential toxicity of oligomeric species formed during the assembly of amyloid fibrils
Q34979345	Structural similarities and differences between amyloidogenic and non-amyloidogenic islet amyloid polypeptide (IAPP) sequences and implications for the dual physiological and pathological activities of these peptides
Q36318227	Structurally detailed coarse-grained model for Sec-facilitated co-translational protein translocation and membrane integration
Q35169052	Structurally-constrained relationships between cognitive states in the human brain
Q35754890	Structure Learning in Bayesian Sensorimotor Integration
Q36096150	Structure Prediction of RNA Loops with a Probabilistic Approach
Q36000695	Structure and age jointly influence rates of protein evolution
Q33363082	Structure and dynamics of interphase chromosomes
Q28476533	Structure and dynamics of the membrane-bound cytochrome P450 2C9
Q64114662	Structure and variability of delay activity in premotor cortex
Q33769581	Structure learning in human sequential decision-making
Q25256886	Structure modeling of all identified G protein-coupled receptors in the human genome
Q28476325	Structure of protein interaction networks and their implications on drug design
Q33325888	Structure of spontaneous UP and DOWN transitions self-organizing in a cortical network model
Q28542474	Structure, dynamics and implied gating mechanism of a human cyclic nucleotide-gated channel
Q64096886	Structure, stability and specificity of the binding of ssDNA and ssRNA with proteins
Q28547355	Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes
Q28551072	Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications
Q28550501	Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication
Q36238611	Structure-Function Network Mapping and Its Assessment via Persistent Homology
Q28541379	Structure-based druggability assessment of the mammalian structural proteome with inclusion of light protein flexibility
Q27323929	Structure-based function prediction of uncharacterized protein using binding sites comparison
Q27325808	Structure-based molecular simulations reveal the enhancement of biased Brownian motions in single-headed kinesin
Q33509504	Structure-based predictive models for allosteric hot spots
Q35216197	Structure-function discrepancy: inhomogeneity and delays in synchronized neural networks
Q33372094	Structure-guided comparative analysis of proteins: principles, tools, and applications for predicting function.
Q28469306	Structure-templated predictions of novel protein interactions from sequence information
Q104792485	Structured environments foster competitor coexistence by manipulating interspecies interfaces
Q34022990	Structured pathway across the transition state for peptide folding revealed by molecular dynamics simulations
Q64068082	Stytra: An open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments
Q34407768	Sub-diffraction limit localization of proteins in volumetric space using Bayesian restoration of fluorescence images from ultrathin specimens
Q35799015	SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing
Q33510927	Subbarrel patterns in somatosensory cortical barrels can emerge from local dynamic instabilities
Q28396564	Subcellular location of PKA controls striatal plasticity: stochastic simulations in spiny dendrites
Q89445065	Subgraphs of functional brain networks identify dynamical constraints of cognitive control
Q113308903	Subjective optimality in finite sequential decision-making
Q54655231	Submit a Topic Page to PLOS Computational Biology and Wikipedia
Q36238192	Suboptimal Criterion Learning in Static and Dynamic Environments.
Q58098399	Suboptimal community growth mediated through metabolite crossfeeding promotes species diversity in the gut microbiota
Q113308402	Suboptimal human inference can invert the bias-variance trade-off for decisions with asymmetric evidence
Q28535104	Substrate-driven mapping of the degradome by comparison of sequence logos
Q30009998	Substrate-specific reorganization of the conformational ensemble of CSK implicates novel modes of kinase function
Q28534619	Successful reconstruction of a physiological circuit with known connectivity from spiking activity alone
Q35644952	Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models
Q89695531	SuperFreq: Integrated mutation detection and clonal tracking in cancer
Q33315558	Superhelical destabilization in regulatory regions of stress response genes
Q113308541	Superinfection exclusion: A viral strategy with short-term benefits and long-term drawbacks
Q33381579	Support vector machines and kernels for computational biology
Q34350843	Suppressed expression of T-box transcription factors is involved in senescence in chronic obstructive pulmonary disease
Q113308405	Suprathreshold perceptual decisions constrain models of confidence
Q34671790	Surface dynamics in allosteric regulation of protein-protein interactions: modulation of calmodulin functions by Ca2+.
Q90770124	Surfactant delivery in rat lungs: Comparing 3D geometrical simulation model with experimental instillation
Q89505399	Surprise response as a probe for compressed memory states
Q113308617	Survival analysis of pathway activity as a prognostic determinant in breast cancer
Q35594649	Survival kinetics of starving bacteria is biphasic and density-dependent
Q24811478	Susceptibility to superhelically driven DNA duplex destabilization: a highly conserved property of yeast replication origins
Q30455684	Sustained firing of model central auditory neurons yields a discriminative spectro-temporal representation for natural sounds
Q112639030	Swarm: A federated cloud framework for large-scale variant analysis
Q28534073	Swimming in light: a large-scale computational analysis of the metabolism of Dinoroseobacter shibae
Q55241618	Switchable slow cellular conductances determine robustness and tunability of network states.
Q28478440	Switches, excitable responses and oscillations in the Ring1B/Bmi1 ubiquitination system
Q126119823	SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more
Q28552723	Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates
Q33598558	Symmetric allosteric mechanism of hexameric Escherichia coli arginine repressor exploits competition between L-arginine ligands and resident arginine residues.
Q35529229	Symmetry restoring bifurcation in collective decision-making
Q89505446	SynToxProfiler: An interactive analysis of drug combination synergy, toxicity and efficacy
Q27319423	Synaptic Homeostasis and Restructuring across the Sleep-Wake Cycle
Q113309406	Synaptic Plasticity Can Produce and Enhance Direction Selectivity
Q114924884	Synaptic balancing: A biologically plausible local learning rule that provably increases neural network noise robustness without sacrificing task performance
Q33329087	Synaptic learning rules and sparse coding in a model sensory system
Q33842145	Synaptic plasticity and connectivity requirements to produce stimulus-pair specific responses in recurrent networks of spiking neurons
Q33320180	Synaptic plasticity can produce and enhance direction selectivity
Q33691413	Synaptic plasticity controls sensory responses through frequency-dependent gamma oscillation resonance
Q34972853	Synaptic plasticity enables adaptive self-tuning critical networks
Q42906956	Synaptic plasticity in neural networks needs homeostasis with a fast rate detector
Q64105016	Synaptic plasticity onto inhibitory neurons as a mechanism for ocular dominance plasticity
Q104514903	Synaptic polarity and sign-balance prediction using gene expression data in the Caenorhabditis elegans chemical synapse neuronal connectome network
Q35034146	Synaptic scaling enables dynamically distinct short- and long-term memory formation.
Q27320981	Synaptic size dynamics as an effectively stochastic process
Q28554861	Synchronization and Random Triggering of Lymphatic Vessel Contractions
Q64098083	Synchronization dependent on spatial structures of a mesoscopic whole-brain network
Q28475649	Synchronization of firing in cortical fast-spiking interneurons at gamma frequencies: a phase-resetting analysis
Q34256366	Synchronization of isolated downstates (K-complexes) may be caused by cortically-induced disruption of thalamic spindling
Q113309515	Synchronization-Induced Rhythmicity of Circadian Oscillators in the Suprachiasmatic Nucleus
Q21145668	Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus
Q31036415	Synchronous chaos and broad band gamma rhythm in a minimal multi-layer model of primary visual cortex
Q64108569	Synchrony is more than its top-down and climatic parts: interacting Moran effects on phytoplankton in British seas
Q113309015	Synergistic interventions to control COVID-19: Mass testing and isolation mitigates reliance on distancing
Q113309538	Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics
Q33583570	Synonymous constraint elements show a tendency to encode intrinsically disordered protein segments
Q33274194	Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics
Q42366320	Synthesizing developmental trajectories.
Q34671726	Synthetic lethality between gene defects affecting a single non-essential molecular pathway with reversible steps
Q58611951	Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction
Q92146671	Syntrophy emerges spontaneously in complex metabolic systems
Q47243165	System identification of signaling dependent gene expression with different time-scale data.
Q28543034	System model network for adipose tissue signatures related to weight changes in response to calorie restriction and subsequent weight maintenance
Q28481411	System-level insights into yeast metabolism by thermodynamic analysis of elementary flux modes
Q113309619	Systematic Analysis of Head-to-head Gene Organization: Evolutionary Conservation and Potential Biological Relevance
Q36245407	Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast
Q36229438	Systematic Approximations to Susceptible-Infectious-Susceptible Dynamics on Networks
Q35746027	Systematic Mapping of Protein Mutational Space by Prolonged Drift Reveals the Deleterious Effects of Seemingly Neutral Mutations
Q35783033	Systematic Prediction of Scaffold Proteins Reveals New Design Principles in Scaffold-Mediated Signal Transduction
Q21563475	Systematic analysis of compositional order of proteins reveals new characteristics of biological functions and a universal correlate of macroevolution
Q33250078	Systematic analysis of head-to-head gene organization: evolutionary conservation and potential biological relevance
Q113308911	Systematic analysis of noise reduction properties of coupled and isolated feed-forward loops
Q33332455	Systematic analysis of pleiotropy in C. elegans early embryogenesis
Q103744175	Systematic clustering algorithm for chromatin accessibility data and its application to hematopoietic cells
Q112613008	Systematic comparison and prediction of the effects of missense mutations on protein-DNA and protein-RNA interactions
Q91650355	Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference
Q112710476	Systematic evaluation of NIPT aneuploidy detection software tools with clinically validated NIPT samples
Q28538197	Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism
Q36323918	Systematic identification of phosphorylation-mediated protein interaction switches
Q33750052	Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity
Q113309111	Systematic inference of indirect transcriptional regulation by protein kinases and phosphatases
Q55155058	Systematic interrogation of diverse Omic data reveals interpretable, robust, and generalizable transcriptomic features of clinically successful therapeutic targets.
Q100529650	Systematic modelling of the development of laminar projection origins in the cerebral cortex: Interactions of spatio-temporal patterns of neurogenesis and cellular heterogeneity
Q113308441	Systematic perturbation of an artificial neural network: A step towards quantifying causal contributions in the brain
Q21145344	Systematic planning of genome-scale experiments in poorly studied species
Q28488578	Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network
Q31044390	Systematic search for recipes to generate induced pluripotent stem cells
Q47122660	Systematic, network-based characterization of therapeutic target inhibitors.
Q58587953	Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes
Q21145302	Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data
Q90024077	Systematically understanding the immunity leading to CRPC progression
Q35952303	Systems Approaches to the Eukaryotic Stress Response
Q27468694	Systems Biology-Based Investigation of Cellular Antiviral Drug Targets Identified by Gene-Trap Insertional Mutagenesis
Q28550867	Systems Pharmacology and Rational Polypharmacy: Nitric Oxide-Cyclic GMP Signaling Pathway as an Illustrative Example and Derivation of the General Case
Q33436246	Systems analysis of bioenergetics and growth of the extreme halophile Halobacterium salinarum
Q33302931	Systems analysis of chaperone networks in the malarial parasite Plasmodium falciparum
Q102147818	Systems biology informed deep learning for inferring parameters and hidden dynamics
Q33717037	Systems biology of coagulation initiation: kinetics of thrombin generation in resting and activated human blood
Q104607826	Systems biology predicts that fibrosis in tuberculous granulomas may arise through macrophage-to-myofibroblast transformation
Q61810619	Systems biology reveals how altered TGFβ signalling with age reduces protection against pro-inflammatory stimuli
Q34888501	Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms.
Q34649554	Systems model of T cell receptor proximal signaling reveals emergent ultrasensitivity
Q28536000	Systems modeling of anti-apoptotic pathways in prostate cancer: psychological stress triggers a synergism pattern switch in drug combination therapy
Q34671782	Systems modeling of molecular mechanisms controlling cytokine-driven CD4+ T cell differentiation and phenotype plasticity
Q55360028	Systems modelling of the EGFR-PYK2-c-Met interaction network predicts and prioritizes synergistic drug combinations for triple-negative breast cancer.
Q35907320	Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli
Q92149993	Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection
Q51748427	Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats.
Q91034697	Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers
Q30486286	T-cell epitope prediction: rescaling can mask biological variation between MHC molecules
Q114054809	TAMC: A deep-learning approach to predict motif-centric transcriptional factor binding activity based on ATAC-seq profile
Q60309399	TAMMiCol: Tool for analysis of the morphology of microbial colonies
Q90716751	TAPES: A tool for assessment and prioritisation in exome studies
Q64090123	TASmania: A bacterial Toxin-Antitoxin Systems database
Q36260900	THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.
Q33621382	TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures
Q38441774	TRANSIT--A Software Tool for Himar1 TnSeq Analysis.
Q33396203	Tag-trigger-consolidation: a model of early and late long-term-potentiation and depression
Q28389058	Taking the lag out of jet lag through model-based schedule design
Q35877428	Tamping Ramping: Algorithmic, Implementational, and Computational Explanations of Phasic Dopamine Signals in the Accumbens
Q28534621	Target essentiality and centrality characterize drug side effects
Q28533401	Target inhibition networks: predicting selective combinations of druggable targets to block cancer survival pathways
Q28534065	Target prediction for an open access set of compounds active against Mycobacterium tuberculosis
Q113309181	Targeted modulation of protein liquid–liquid phase separation by evolution of amino-acid sequence
Q33258812	Targeted molecular dynamics study of C-loop closure and channel gating in nicotinic receptors
Q113309582	Targeted molecular dynamics study of C-loop closure and channel gating in nicotinic receptors
Q113309149	Targeted pandemic containment through identifying local contact network bottlenecks
Q113309553	Targeting Neuropilin-1 to inhibit VEGF signaling in cancer: comparison of therapeutic approaches
Q104129915	Targeting TMPRSS2 and Cathepsin B/L together may be synergistic against SARS-CoV-2 infection
Q33267903	Targeting neuropilin-1 to inhibit VEGF signaling in cancer: Comparison of therapeutic approaches
Q35758706	Task-Driven Activity Reduces the Cortical Activity Space of the Brain: Experiment and Whole-Brain Modeling
Q35004414	Task-based core-periphery organization of human brain dynamics
Q34531140	Task-dependent changes in cross-level coupling between single neurons and oscillatory activity in multiscale networks
Q98193496	Task-evoked activity quenches neural correlations and variability across cortical areas
Q113308957	Task-induced neural covariability as a signature of approximate Bayesian learning and inference
Q35082174	Task-specific response strategy selection on the basis of recent training experience
Q96121396	Taste of time: A porous-medium model for human tongue surface with implications for early taste perception
Q92697568	TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements
Q34064157	Teaching bioinformatics at the secondary school level
Q35439031	Teaching bioinformatics in concert
Q28710178	Teaching the fundamentals of biological data integration using classroom games
Q34407749	Teasing apart translational and transcriptional components of stochastic variations in eukaryotic gene expression
Q90375354	Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression
Q93075288	Telling ecological networks apart by their structure: A computational challenge
Q55510151	Tellurium notebooks-An environment for reproducible dynamical modeling in systems biology.
Q28473454	Temperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstraction
Q41501631	Temperature manipulation of neuronal dynamics in a forebrain motor control nucleus.
Q36177100	Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements.
Q36395819	Temperature-amplitude coupling for stable biological rhythms at different temperatures
Q97893923	Temperature-robust activity patterns arise from coordinated axonal Sodium channel properties
Q36142987	Template-Based Modeling of Protein-RNA Interactions
Q98614485	Template-based mapping of dynamic motifs in tissue morphogenesis
Q99237401	Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data
Q36222115	Temporal Dynamics and Developmental Maturation of Salience, Default and Central-Executive Network Interactions Revealed by Variational Bayes Hidden Markov Modeling
Q28550568	Temporal Gillespie Algorithm: Fast Simulation of Contagion Processes on Time-Varying Networks
Q34574802	Temporal adaptation enhances efficient contrast gain control on natural images
Q21092561	Temporal controls of the asymmetric cell division cycle in Caulobacter crescentus
Q33900836	Temporal encoding in a nervous system
Q34499316	Temporal expression-based analysis of metabolism
Q64099424	Temporal pattern separation in hippocampal neurons through multiplexed neural codes
Q55433889	Temporal precision of regulated gene expression.
Q28473048	Temporal sensitivity of protein kinase a activation in late-phase long term potentiation
Q40968667	Temporal specificity of the initial adaptive response in motor adaptation
Q33495545	Temporal variability and social heterogeneity in disease transmission: the case of SARS in Hong Kong
Q117046516	Ten (not so) simple rules for clinical trial data-sharing
Q21710758	Ten Simple Rules for Creating a Good Data Management Plan
Q28596012	Ten Simple Rules for Curating and Facilitating Small Workshops
Q28595967	Ten Simple Rules for Developing Public Biological Databases
Q28555216	Ten Simple Rules for Developing Usable Software in Computational Biology
Q28974677	Ten Simple Rules for Developing a MOOC
Q28974675	Ten Simple Rules for Developing a Successful Research Proposal in Brazil
Q28597077	Ten Simple Rules for Digital Data Storage
Q24492476	Ten Simple Rules for Effective Statistical Practice
Q28974686	Ten Simple Rules for Establishing International Research Collaborations
Q28974685	Ten Simple Rules for Experiments' Provenance
Q28974688	Ten Simple Rules for Protecting Research Integrity
Q28600926	Ten Simple Rules for Selecting a Bio-ontology
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Q28974678	Ten Simple Rules for Writing a Postdoctoral Fellowship
Q28974687	Ten Simple Rules for Writing a Reply Paper
Q28601821	Ten Simple Rules for a Bioinformatics Journal Club
Q28974679	Ten Simple Rules for a Computational Biologist's Laboratory Notebook
Q94606055	Ten Simple Rules for a successful remote postdoc
Q61446555	Ten Simple Rules for avoiding and resolving conflicts with your colleagues
Q91507540	Ten Simple Rules for landing on the right job after your PhD or postdoc
Q90665772	Ten Simple Rules for organizing a non-real-time web conference
Q91507653	Ten Simple Rules for writing algorithmic bioinformatics conference papers
Q28974674	Ten Simple Rules on How to Organize a Scientific Retreat
Q28974676	Ten Simple Rules to Enable Multi-site Collaborations through Data Sharing
Q89802256	Ten Simple Rules to becoming a principal investigator
Q42408118	Ten Years of PLoS Computational Biology: A Decade of Appreciation and Innovation
Q62565206	Ten principles for machine-actionable data management plans
Q125870944	Ten quick tips for avoiding pitfalls in multi-omics data integration analyses
Q64071693	Ten quick tips for biocuration
Q117012150	Ten quick tips for biomarker discovery and validation analyses using machine learning
Q125614882	Ten quick tips for building FAIR workflows
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Q64056732	Ten quick tips for creating an effective lesson
Q112688714	Ten quick tips for deep learning in biology
Q91034764	Ten quick tips for delivering programming lessons
Q120765481	Ten quick tips for editing Wikidata
Q64991227	Ten quick tips for effective dimensionality reduction.
Q57281639	Ten quick tips for getting the most scientific value out of numerical data
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Q91507394	Ten quick tips for homology modeling of high-resolution protein 3D structures
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Q117012156	Ten quick tips for staying safe online
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Q63443974	Ten quick tips for using a Raspberry Pi
Q38483283	Ten quick tips for using the gene ontology
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Q117013700	Ten simple rules and a template for creating workflows-as-applications
Q113309213	Ten simple rules for Global North researchers to stop perpetuating helicopter research in the Global South
Q28974681	Ten simple rules for a community computational challenge
Q21092577	Ten simple rules for a good poster presentation
Q117013528	Ten simple rules for a successful EU Marie Skłodowska-Curie Actions Postdoctoral (MSCA) fellowship application
Q21563504	Ten simple rules for a successful collaboration
Q28974680	Ten simple rules for a successful cross-disciplinary collaboration
Q117013627	Ten simple rules for a successful international consortium in big data omics
Q107507536	Ten simple rules for acing virtual interviews
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Q113309214	Ten simple rules for aspiring graduate students
Q28974711	Ten simple rules for aspiring scientists in a low-income country
Q113309311	Ten simple rules for attending your first conference
Q113309129	Ten simple rules for avoiding predatory publishing scams
Q113309127	Ten simple rules for being a faculty advocate of first-year graduate students
Q28974693	Ten simple rules for better figures
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Q113308650	Ten simple rules for building a successful science start-up
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Q113308699	Ten simple rules for building an enthusiastic iGEM team
Q21145322	Ten simple rules for building and maintaining a scientific reputation
Q92074429	Ten simple rules for carrying out and writing meta-analyses
Q28974710	Ten simple rules for chairing a scientific session
Q113309179	Ten simple rules for choosing a PhD supervisor
Q28974715	Ten simple rules for choosing between industry and academia
Q54957277	Ten simple rules for collaborative lesson development.
Q59803929	Ten simple rules for collaboratively writing a multi-authored paper
Q113309247	Ten simple rules for conducting a mendelian randomization study
Q104499322	Ten simple rules for creating a brand-new virtual academic meeting (even amid a pandemic)
Q117013601	Ten simple rules for creating a global network in computational biology
Q113308947	Ten simple rules for creating a scientific web application
Q117013683	Ten simple rules for creating a sense of belonging in your research group
Q117013576	Ten simple rules for creating and sustaining antiracist graduate programs
Q111107460	Ten simple rules for creating reusable pathway models for computational analysis and visualization
Q28678693	Ten simple rules for cultivating open science and collaborative R&D;
Q117013749	Ten simple rules for defining a computational biology project
Q59803947	Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars
Q107232113	Ten simple rules for designing analogue science games
Q125341059	Ten simple rules for designing and conducting undergraduate replication projects
Q113308482	Ten simple rules for designing and running a computing minor for bio/chem students
Q107507557	Ten simple rules for designing learning experiences that involve enhancing computational biology Wikipedia articles
Q42362017	Ten simple rules for developing a mentor-mentee expectations document.
Q21563493	Ten simple rules for developing a short bioinformatics training course
Q117013363	Ten simple rules for developing bioinformatics capacity at an academic institution
Q57281635	Ten simple rules for developing good reading habits during graduate school and beyond
Q117013658	Ten simple rules for developing visualization tools in genomics
Q60944643	Ten simple rules for documenting scientific software
Q107507538	Ten simple rules for doing a postdoc in pharma
Q28974718	Ten simple rules for doing your best research, according to Hamming
Q47152540	Ten simple rules for drawing scientific comics
Q21145331	Ten simple rules for editing Wikipedia
Q28974696	Ten simple rules for effective computational research
Q28649586	Ten simple rules for effective online outreach
Q113308967	Ten simple rules for effective presentation slides
Q117013710	Ten simple rules for empowering women in STEM
Q107507556	Ten simple rules for engaging with artificial intelligence in biomedicine
Q113308632	Ten simple rules for establishing a mentorship programme
Q117013607	Ten simple rules for failing successfully in academia
Q113308717	Ten simple rules for finding and selecting R packages
Q28974691	Ten simple rules for finishing your PhD
Q42314572	Ten simple rules for forming a scientific professional society
Q116516348	Ten simple rules for funding scientific open source software
Q28974708	Ten simple rules for getting ahead as a computational biologist in Academia
Q114832729	Ten simple rules for getting and giving credit for data
Q24493986	Ten simple rules for getting grants
Q24288784	Ten simple rules for getting help from online scientific communities
Q28974705	Ten simple rules for getting involved in your scientific community
Q24811850	Ten simple rules for getting published
Q85188511	Ten simple rules for getting started on Twitter as a scientist
Q107507548	Ten simple rules for getting started with command-line bioinformatics
Q113308588	Ten simple rules for getting started with statistics in graduate school
Q42346634	Ten simple rules for getting the most out of a summer laboratory internship
Q92172498	Ten simple rules for giving an effective academic job talk
Q113308536	Ten simple rules for good leadership
Q113308532	Ten simple rules for good research practice
Q28974712	Ten simple rules for graduate students
Q83802812	Ten simple rules for helping newcomers become contributors to open projects
Q107507544	Ten simple rules for hitting a home run with your elevator pitch
Q107507545	Ten simple rules for hosting artists in a scientific lab
Q117013668	Ten simple rules for how you can help make your lab a better place as a graduate student or postdoc
Q117013739	Ten simple rules for implementing open and reproducible research practices after attending a training course
Q113308537	Ten simple rules for improving communication among scientists
Q112776989	Ten simple rules for improving research data discovery
Q102205291	Ten simple rules for increased lab resilience
Q112284582	Ten simple rules for initial data analysis
Q91986492	Ten simple rules for innovative dissemination of research
Q47109161	Ten simple rules for international short-term research stays
Q28974695	Ten simple rules for internship in a pharmaceutical company
Q117013678	Ten simple rules for investigating (meta)genomic data from environmental ecosystems
Q113308822	Ten simple rules for large-scale data processing
Q117013694	Ten simple rules for launching an academic research career
Q28974690	Ten simple rules for lifelong learning, according to Hamming
Q113308772	Ten simple rules for making a software tool workflow-ready
Q107507537	Ten simple rules for making a vocabulary FAIR
Q24494023	Ten simple rules for making good oral presentations
Q42363359	Ten simple rules for making research software more robust
Q100139626	Ten simple rules for making training materials FAIR
Q100158863	Ten simple rules for making training materials FAIR
Q113308492	Ten simple rules for managing communications with a large number of coauthors
Q126191897	Ten simple rules for managing laboratory information
Q114596583	Ten simple rules for maximizing the recommendations of the NIH data management and sharing plan
Q91223109	Ten simple rules for measuring the impact of workshops
Q91507505	Ten simple rules for more objective decision-making
Q107507552	Ten simple rules for navigating the computational aspect of an interdisciplinary PhD
Q113308554	Ten simple rules for navigating the reference letter seeking process
Q28974703	Ten simple rules for online learning
Q98938911	Ten simple rules for open human health research
Q113309261	Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries
Q100939904	Ten simple rules for organizing a data science workshop
Q28974717	Ten simple rules for organizing a scientific meeting
Q117013544	Ten simple rules for organizing a special session at a scientific conference
Q28974709	Ten simple rules for organizing a virtual conference--anywhere
Q64096909	Ten simple rules for organizing a webinar series
Q24490172	Ten simple rules for organizing an unconference
Q100406778	Ten simple rules for partnering with K-12 teachers to support broader impact goals
Q113308698	Ten simple rules for principled simulation modelling
Q107507539	Ten simple rules for productive lab meetings
Q64090148	Ten simple rules for providing a meaningful research experience to high school students
Q28974707	Ten simple rules for providing a scientific Web resource
Q90665789	Ten simple rules for providing effective bioinformatics research support
Q90458354	Ten simple rules for providing optimal administrative support to research teams
Q124748156	Ten simple rules for pushing boundaries of inclusion at academic events
Q107507553	Ten simple rules for quick and dirty scientific programming
Q98169782	Ten simple rules for reading a scientific paper
Q24288782	Ten simple rules for reducing overoptimistic reporting in methodological computational research
Q117013617	Ten simple rules for reporting a bug
Q117013518	Ten simple rules for reporting information on species interactions
Q28974699	Ten simple rules for reproducible computational research
Q96693352	Ten simple rules for researchers while in isolation from a pandemic
Q110894122	Ten simple rules for researchers who want to develop web apps
Q30000278	Ten simple rules for responsible big data research
Q55045385	Ten simple rules for responsible referencing.
Q28974721	Ten simple rules for reviewers
Q94606235	Ten simple rules for running a successful women-in-STEM organization on an academic campus
Q117013648	Ten simple rules for running a summer research program
Q107507551	Ten simple rules for running and managing virtual internships
Q28974697	Ten simple rules for running interactive workshops
Q113308958	Ten simple rules for scientists getting started in science education
Q57030872	Ten simple rules for scientists: Improving your writing productivity
Q21145676	Ten simple rules for selecting a postdoctoral position
Q117013759	Ten simple rules for serving as an editor
Q42369868	Ten simple rules for short and swift presentations
Q107507549	Ten simple rules for starting (and sustaining) an academic data science initiative
Q28974704	Ten simple rules for starting a company
Q28974698	Ten simple rules for starting a regional student group
Q102205317	Ten simple rules for starting research in your late teens
Q42366129	Ten simple rules for structuring papers
Q113308555	Ten simple rules for succeeding as an underrepresented STEM undergraduate
Q42362018	Ten simple rules for successfully completing a graduate degree in Latin America.
Q92901595	Ten simple rules for successfully hosting an intern at a scientific software company
Q117013567	Ten simple rules for successfully supporting first-generation/low-income (FLI) students in STEM
Q100406823	Ten simple rules for supporting a temporary online pivot in higher education
Q113309191	Ten simple rules for supporting historically underrepresented students in science
Q42346453	Ten simple rules for surviving an interdisciplinary PhD.
Q113309187	Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions
Q107507554	Ten simple rules for tackling your first mathematical models: A guide for graduate students by graduate students
Q108127189	Ten simple rules for teaching applied programming in an authentic and immersive online environment
Q28974706	Ten simple rules for teaching bioinformatics at the high school level
Q113746387	Ten simple rules for teaching yourself R
Q24492824	Ten simple rules for the care and feeding of scientific data
Q24494742	Ten simple rules for the open development of scientific software
Q112776991	Ten simple rules for training yourself in an emerging field
Q104683575	Ten simple rules for typographically appealing scientific texts
Q117013510	Ten simple rules for unbiased teaching
Q113308676	Ten simple rules for using entrepreneurship skills to improve research careers and culture
Q117013720	Ten simple rules for using public biological data for your research
Q101061598	Ten simple rules for women principal investigators during a pandemic
Q101558492	Ten simple rules for writing Dockerfiles for reproducible data science
Q24492430	Ten simple rules for writing a PLOS ten simple rules article
Q117013643	Ten simple rules for writing a Registered Report
Q46168993	Ten simple rules for writing a career development award proposal.
Q55235017	Ten simple rules for writing a cover letter to accompany a job application for an academic position.
Q28677036	Ten simple rules for writing a literature review
Q102049199	Ten simple rules for writing a paper about scientific software
Q47553509	Ten simple rules for writing a popular science book.
Q46236365	Ten simple rules for writing a response to reviewers
Q92172545	Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks
Q107507547	Ten simple rules for writing compelling recommendation letters
Q24494004	Ten simple rules for writing research papers
Q99561474	Ten simple rules for writing scientific op-ed articles
Q61810622	Ten simple rules for writing statistical book reviews
Q117013595	Ten simple rules in biomedical engineering to improve healthcare equity
Q42370646	Ten simple rules in considering a career in academia versus government
Q24810428	Ten simple rules of live tweeting at scientific conferences
Q61814659	Ten simple rules on how to create open access and reproducible molecular simulations of biological systems
Q117013586	Ten simple rules on how to develop a stakeholder engagement plan
Q98938891	Ten simple rules on how to write a standard operating procedure
Q111898502	Ten simple rules on writing clean and reliable open-source scientific software
Q28974692	Ten simple rules to achieve conference speaker gender balance
Q90770100	Ten simple rules to aid in achieving a vision
Q100560857	Ten simple rules to colorize biological data visualization
Q28754957	Ten simple rules to combine teaching and research
Q28974702	Ten simple rules to commercialize scientific research
Q29788209	Ten simple rules to consider regarding preprint submission
Q54946208	Ten simple rules to create a serious game, illustrated with examples from structural biology.
Q90305620	Ten simple rules to create biological network figures for communication
Q117013637	Ten simple rules to cultivate belonging in collaborative data science research teams
Q107507543	Ten simple rules to cultivate transdisciplinary collaboration in data science
Q113308512	Ten simple rules to host an inclusive conference
Q113309314	Ten simple rules to improve academic work–life balance
Q98775052	Ten simple rules to increase computational skills among biologists with Code Clubs
Q42346633	Ten simple rules to initiate and run a postdoctoral association
Q42355106	Ten simple rules to make the most out of your undergraduate research career
Q108653820	Ten simple rules to make your computing more environmentally sustainable
Q107392532	Ten simple rules to make your publication look better
Q99707407	Ten simple rules to make your research more sustainable
Q98775108	Ten simple rules to power drug discovery with data science
Q28974701	Ten simple rules to protect your intellectual property
Q113308667	Ten simple rules to ruin a collaborative environment
Q94606054	Ten simple rules to run a successful BioHackathon
Q28974682	Ten simple rules to win a Nobel Prize
Q64056721	Ten simple rules towards healthier research labs
Q56943796	Ten simple rules when considering retirement
Q113746485	Ten steps to investigate a cellular system with mathematical modeling
Q29615564	Ten years of pathway analysis: current approaches and outstanding challenges
Q96292614	Tensile force-induced cytoskeletal remodeling: Mechanics before chemistry
Q34266035	Tension and robustness in multitasking cellular networks.
Q36182786	Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1
Q101061710	Tensorpac: An open-source Python toolbox for tensor-based phase-amplitude coupling measurement in electrophysiological brain signals
Q34302116	Termination of Ca²+ release for clustered IP₃R channels
Q35758950	Testing Foundations of Biological Scaling Theory Using Automated Measurements of Vascular Networks
Q28483283	Testing biochemistry revisited: how in vivo metabolism can be understood from in vitro enzyme kinetics
Q123238871	Testing microbiome associations with survival times at both the community and individual taxon levels
Q101213232	Testing structural identifiability by a simple scaling method
Q36282404	Testing the limits of gradient sensing.
Q21145323	Testing the ortholog conjecture with comparative functional genomic data from mammals
Q34743736	Testing whether humans have an accurate model of their own motor uncertainty in a speeded reaching task
Q112563787	Testing, tracing and isolation in compartmental models
Q36207982	Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine
Q34504588	Text Mining for Protein Docking
Q113309115	Thalamic bursts modulate cortical synchrony locally to switch between states of global functional connectivity in a cognitive task
Q113308413	Thalamic deep brain stimulation paradigm to reduce consciousness: Cortico-striatal dynamics implicated in mechanisms of consciousness
Q57997633	Thalamocortical and intracortical laminar connectivity determines sleep spindle properties
Q47222105	Thalamocortical control of propofol phase-amplitude coupling
Q30360130	The (in)dependence of alternative splicing and gene duplication
Q28603708	The 2015 Bioinformatics Open Source Conference (BOSC 2015)
Q33627497	The 20S proteasome splicing activity discovered by SpliceMet
Q28584579	The 5th ISCB Wikipedia Competition: Coming to a Classroom Near You?
Q113309665	The Activity Reaction Core and Plasticity of Metabolic Networks
Q94937384	The Affective Ising Model: A computational account of human affect dynamics
Q55087155	The AmP project: Comparing species on the basis of dynamic energy budget parameters.
Q113309668	The Association of Tetrameric Acetylcholinesterase With ColQ Tail: A Block Normal Mode Analysis
Q90159818	The Beacon Calculus: A formal method for the flexible and concise modelling of biological systems
Q27318143	The Beta Cell in Its Cluster: Stochastic Graphs of Beta Cell Connectivity in the Islets of Langerhans
Q36126249	The C. elegans Connectome Consists of Homogenous Circuits with Defined Functional Roles
Q104607103	The COVID-19 outbreak in Sichuan, China: Epidemiology and impact of interventions
Q28484023	The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes
Q35862547	The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome
Q30378763	The Coda of the Transient Response in a Sensitive Cochlea: A Computational Modeling Study.
Q36096145	The Complexity of Dynamics in Small Neural Circuits
Q36056805	The Computational Development of Reinforcement Learning during Adolescence
Q37248996	The Computational Properties of a Simplified Cortical Column Model
Q36060342	The Context-Dependence of Mutations: A Linkage of Formalisms
Q36131476	The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
Q35034106	The Convallis rule for unsupervised learning in cortical networks
Q58587963	The Cultural Brain Hypothesis: How culture drives brain expansion, sociality, and life history
Q104069280	The DIOS framework for optimizing infectious disease surveillance: Numerical methods for simulation and multi-objective optimization of surveillance network architectures
Q35787645	The Decay of Motor Memories Is Independent of Context Change Detection
Q30385309	The Development of Audio-Visual Integration for Temporal Judgements.
Q35914368	The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt
Q36089426	The Differential Response of Proteins to Macromolecular Crowding
Q92658776	The Dynamic Shift Detector: An algorithm to identify changes in parameter values governing populations
Q48235496	The E2.65A mutation disrupts dynamic binding poses of SB269652 at the dopamine D2 and D3 receptors
Q36149640	The Edge of Stability: Response Times and Delta Oscillations in Balanced Networks
Q35882759	The Effect of Farmers' Decisions on Pest Control with Bt Crops: A Billion Dollar Game of Strategy.
Q30365081	The Effect of Gap Junctional Coupling on the Spatiotemporal Patterns of Ca2+ Signals and the Harmonization of Ca2+-Related Cellular Responses
Q35631845	The Effect of Incentives and Meta-incentives on the Evolution of Cooperation
Q27317484	The Elementary Operations of Human Vision Are Not Reducible to Template-Matching
Q36071809	The Emergence of Synaesthesia in a Neuronal Network Model via Changes in Perceptual Sensitivity and Plasticity
Q30391703	The Emotional Gatekeeper: A Computational Model of Attentional Selection and Suppression through the Pathway from the Amygdala to the Inhibitory Thalamic Reticular Nucleus
Q35838095	The Encoding of Decision Difficulty and Movement Time in the Primate Premotor Cortex
Q36189760	The Environment Shapes the Inner Vestibule of LeuT.
Q33981225	The Eps8/IRSp53/VASP network differentially controls actin capping and bundling in filopodia formation
Q30395124	The Essential Complexity of Auditory Receptive Fields
Q36000834	The Evolution of Quorum Sensing as a Mechanism to Infer Kinship
Q113309574	The Evolution of Word Composition in Metazoan Promoter Sequence
Q27490256	The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus
Q27316524	The Evolutionary Origins of Hierarchy
Q93073920	The FACTS model of speech motor control: Fusing state estimation and task-based control
Q31044431	The FGGY carbohydrate kinase family: insights into the evolution of functional specificities
Q36260905	The Flash-Lag Effect as a Motion-Based Predictive Shift
Q28547082	The Force at the Tip--Modelling Tension and Proliferation in Sprouting Angiogenesis
Q33245469	The G protein-coupled receptor subset of the chicken genome
Q33518458	The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
Q33478389	The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species
Q34611043	The HAMP signal relay domain adopts multiple conformational states through collective piston and tilt motions
Q28542469	The HIV mutation browser: a resource for human immunodeficiency virus mutagenesis and polymorphism data
Q36233825	The Hamiltonian Brain: Efficient Probabilistic Inference with Excitatory-Inhibitory Neural Circuit Dynamics
Q113309505	The Human Genomic Melting Map
Q47561078	The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide.
Q24811804	The ISCB: Growing and Evolving in Step with Science
Q36100446	The Impact of Cortical Lesions on Thalamo-Cortical Network Dynamics after Acute Ischaemic Stroke: A Combined Experimental and Theoretical Study
Q28550388	The Impact of Different Sources of Fluctuations on Mutual Information in Biochemical Networks
Q112338813	The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function
Q113309523	The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
Q36029372	The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach
Q27316057	The Integrated Role of Wnt/β-Catenin, N-Glycosylation, and E-Cadherin-Mediated Adhesion in Network Dynamics
Q36003006	The Interaction between Vector Life History and Short Vector Life in Vector-Borne Disease Transmission and Control
Q27318502	The Internal Dynamics of Fibrinogen and Its Implications for Coagulation and Adsorption
Q21145662	The International Society for Computational Biology 10th Anniversary
Q35750338	The Interplay between Wnt Mediated Expansion and Negative Regulation of Growth Promotes Robust Intestinal Crypt Structure and Homeostasis
Q27318325	The Invariance Hypothesis Implies Domain-Specific Regions in Visual Cortex
Q36214255	The Kinematics of Plant Nutation Reveals a Simple Relation between Curvature and the Orientation of Differential Growth
Q28548332	The LUX Score: A Metric for Lipidome Homology
Q36214244	The Limitations of Model-Based Experimental Design and Parameter Estimation in Sloppy Systems.
Q36114159	The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease
Q113309592	The Many Faces of Protein-Protein Interactions: A Compendium of Interface Geometry
Q28611444	The Mass-Longevity Triangle: Pareto Optimality and the Geometry of Life-History Trait Space
Q36015581	The Maximum Entropy Fallacy Redux?
Q28476170	The Modular Organization of Protein Interactions in Escherichia coli
Q35890108	The Molecular Basis of Polyunsaturated Fatty Acid Interactions with the Shaker Voltage-Gated Potassium Channel
Q101348844	The Moran process on 2-chromatic graphs
Q27316085	The More the Tubular: Dynamic Bundling of Actin Filaments for Membrane Tube Formation
Q36226780	The Multilayer Connectome of Caenorhabditis elegans
Q28476004	The Mycobacterium tuberculosis drugome and its polypharmacological implications
Q112304738	The N-terminal domain of RfaH plays an active role in protein fold-switching
Q28710476	The PLOS Computational Biology Software Section
Q51761787	The Pathway Coexpression Network: Revealing pathway relationships.
Q28471808	The Per2 negative feedback loop sets the period in the mammalian circadian clock mechanism
Q28548168	The Physiological Molecular Shape of Spectrin: A Compact Supercoil Resembling a Chinese Finger Trap
Q36261014	The Potential Role of Direct and Indirect Contacts on Infection Spread in Dairy Farm Networks
Q36247418	The Power of Malaria Vaccine Trials Using Controlled Human Malaria Infection
Q28607511	The Problem with Phi: A Critique of Integrated Information Theory
Q36182002	The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization
Q21145307	The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum
Q24813262	The RNA silencing pathway: the bits and pieces that matter
Q36094801	The Representation of Prediction Error in Auditory Cortex
Q28552660	The Role of Adaptation in Bacterial Speed Races
Q28550707	The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB
Q35745859	The Role of Cell Volume in the Dynamics of Seizure, Spreading Depression, and Anoxic Depolarization
Q35996823	The Role of Genome Accessibility in Transcription Factor Binding in Bacteria
Q27489856	The Role of Medical Structural Genomics in Discovering New Drugs for Infectious Diseases
Q35877497	The Role of Symmetric Stem Cell Divisions in Tissue Homeostasis
Q113308736	The SAMBA tool uses long reads to improve the contiguity of genome assemblies
Q28543640	The SH2 domain regulates c-Abl kinase activation by a cyclin-like mechanism and remodulation of the hinge motion
Q89857216	The SONATA data format for efficient description of large-scale network models
Q35664265	The Sense of Confidence during Probabilistic Learning: A Normative Account
Q35814215	The Shape of an Auxin Pulse, and What It Tells Us about the Transport Mechanism
Q113309396	The Signaling Petri Net-based Simulator: A Non-Parametric Strategy for Characterizing the Dynamics of Cell-Specific Signaling Networks
Q36168972	The Spatial Dynamics of Predators and the Benefits and Costs of Sharing Information
Q36126330	The Statistical Determinants of the Speed of Motor Learning
Q113309539	The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns
Q38646709	The Stochastic Early Reaction, Inhibition, and late Action (SERIA) model for antisaccades.
Q28550348	The Structural Basis for Activation and Inhibition of ZAP-70 Kinase Domain
Q35825920	The Trigger Factor Chaperone Encapsulates and Stabilizes Partial Folds of Substrate Proteins
Q28598250	The Virtuous Cycle of a Data Ecosystem
Q34789242	The ability of flux balance analysis to predict evolution of central metabolism scales with the initial distance to the optimum
Q64915566	The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.
Q113308693	The ability to classify patients based on gene-expression data varies by algorithm and performance metric
Q113308420	The accuracy of absolute differential abundance analysis from relative count data
Q113308842	The activity of human enhancers is modulated by the splicing of their associated lncRNAs
Q24811413	The activity reaction core and plasticity of metabolic networks
Q35488166	The amino acid alphabet and the architecture of the protein sequence-structure map. I. Binary alphabets
Q41443492	The application of project-based learning in bioinformatics training
Q33352684	The ascent of the abundant: how mutational networks constrain evolution
Q24810736	The association of tetrameric acetylcholinesterase with ColQ tail: a block normal mode analysis
Q113308817	The automatic parameter-exploration with a machine-learning-like approach: Powering the evolutionary modeling on the origin of life
Q91917195	The benefits of insect-swarm hunting to echolocating bats, and its influence on the evolution of bat echolocation signals
Q33951911	The binding of learning to action in motor adaptation
Q21092581	The biocurator: connecting and enhancing scientific data
Q126509842	The blossoming of methods and software in computational biology
Q37509553	The brain ages optimally to model its environment: evidence from sensory learning over the adult lifespan
Q40265495	The brain's router: a cortical network model of serial processing in the primate brain
Q92561961	The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes
Q28474349	The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes
Q113308531	The catalytic mechanism of the mitochondrial methylenetetrahydrofolate dehydrogenase/cyclohydrolase (MTHFD2)
Q35172659	The changing geometry of a fitness landscape along an adaptive walk
Q113309161	The color phi phenomenon: Not so special, after all?
Q54978324	The complex ecosystem in non small cell lung cancer invasion.
Q104799589	The complexity of protein interactions unravelled from structural disorder
Q113308400	The computational relationship between reinforcement learning, social inference, and paranoia
Q33640089	The construction and use of log-odds substitution scores for multiple sequence alignment
Q113309116	The correlation between cell and nucleus size is explained by an eukaryotic cell growth model
Q41876198	The correlation structure of local neuronal networks intrinsically results from recurrent dynamics
Q100523109	The covariance perceptron: A new paradigm for classification and processing of time series in recurrent neuronal networks
Q113309141	The critical balance between dopamine D2 receptor and RGS for the sensitive detection of a transient decay in dopamine signal
Q33714071	The decay of motor adaptation to novel movement dynamics reveals an asymmetry in the stability of motion state-dependent learning
Q47699291	The development and application of bioinformatics core competencies to improve bioinformatics training and education
Q33959161	The development of computational biology in Pakistan: still a long way to go.
Q27334550	The distinct conformational dynamics of K-Ras and H-Ras A59G
Q30009975	The dominant folding route minimizes backbone distortion in SH3.
Q113308396	The dopamine circuit as a reward-taxis navigation system
Q92078302	The drift diffusion model as the choice rule in inter-temporal and risky choice: A case study in medial orbitofrontal cortex lesion patients and controls
Q30493622	The dynamic brain: from spiking neurons to neural masses and cortical fields
Q33981218	The dynamical mechanism of auto-inhibition of AMP-activated protein kinase
Q33880743	The dynamics of DNA methylation covariation patterns in carcinogenesis.
Q33466761	The dynamics of T-cell receptor repertoire diversity following thymus transplantation for DiGeorge anomaly
Q33325897	The dynamics of human body weight change
Q92149917	The dynamics of motor learning through the formation of internal models
Q34456035	The dynamics of naturally acquired immunity to Plasmodium falciparum infection
Q34055229	The dynamics of supply and demand in mRNA translation
Q41073611	The eBioKit, a stand-alone educational platform for bioinformatics
Q28473391	The effect of a DeltaK280 mutation on the unfolded state of a microtubule-binding repeat in Tau
Q34468851	The effect of bacterial recombination on adaptation on fitness landscapes with limited peak accessibility
Q55496764	The effect of cell geometry on polarization in budding yeast.
Q34042610	The effect of heterogeneity on invasion in spatial epidemics: from theory to experimental evidence in a model system
Q91603716	The effect of inhibition on rate code efficiency indicators
Q33987369	The effect of macromolecular crowding, ionic strength and calcium binding on calmodulin dynamics
Q113309269	The effect of natural selection on the propagation of protein expression noise to bacterial growth
Q33463290	The effect of ongoing exposure dynamics in dose response relationships
Q46148859	The effect of spatial randomness on the average fixation time of mutants.
Q33288725	The effect of stochasticity on the lac operon: an evolutionary perspective
Q33987394	The effect of sustained compression on oxygen metabolic transport in the intervertebral disc decreases with degenerative changes
Q34246880	The effects of NMDA subunit composition on calcium influx and spike timing-dependent plasticity in striatal medium spiny neurons
Q28473837	The effects of NR2 subunit-dependent NMDA receptor kinetics on synaptic transmission and CaMKII activation
Q33632280	The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies
Q34557945	The effects of city streets on an urban disease vector
Q34058097	The effects of dominance on leadership and energetic gain: a dynamic game between pairs of social foragers
Q34550712	The effects of temperature on the stability of a neuronal oscillator
Q35191405	The effects of theta precession on spatial learning and simplicial complex dynamics in a topological model of the hippocampal spatial map
Q34181287	The efficiency of the human CD8+ T cell response: how should we quantify it, what determines it, and does it matter?
Q25255975	The eighth annual bio-ontologies meeting
Q28482439	The emergence and early evolution of biological carbon-fixation
Q33327691	The emergence and fate of horizontally acquired genes in Escherichia coli
Q25257255	The emergence of Up and Down states in cortical networks
Q113309649	The emergence of Up and Down states in cortical networks
Q33285865	The emergence of alternative 3' and 5' splice site exons from constitutive exons
Q34733512	The emergence of environmental homeostasis in complex ecosystems
Q60308926	The empirical characteristics of human pattern vision defy theoretically-driven expectations
Q27334813	The energy landscape, folding pathways and the kinetics of a knotted protein
Q33335139	The energy landscapes of repeat-containing proteins: topology, cooperativity, and the folding funnels of one-dimensional architectures
Q41128425	The equivalence of information-theoretic and likelihood-based methods for neural dimensionality reduction
Q34531148	The evolution of cell-to-cell communication in a sporulating bacterium
Q34699680	The evolution of collective restraint: policing and obedience among non-conjugative plasmids
Q35145236	The evolution of multivariate maternal effects
Q21145380	The evolution of robust development and homeostasis in artificial organisms
Q21092579	The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
Q33262628	The evolution of word composition in metazoan promoter sequence
Q28476558	The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach
Q64973787	The evolutionary dynamics of metabolic protocells.
Q112579512	The evolutionary history of topological variations in the CPA/AT transporters
Q113309044	The evolutionary maintenance of Lévy flight foraging
Q42701666	The evolutionary origins of Lévy walk foraging
Q53432790	The exclusive effects of chaperonin on the behavior of proteins with 52 knot.
Q112286223	The experience of teaching introductory programming skills to bioscientists in Brazil
Q48149977	The extent of ribosome queuing in budding yeast.
Q28489085	The fate of cooperation during range expansions
Q50114718	The feasibility of equilibria in large ecosystems: A primary but neglected concept in the complexity-stability debate.
Q28489087	The fidelity of dynamic signaling by noisy biomolecular networks
Q61817292	The finite state projection based Fisher information matrix approach to estimate information and optimize single-cell experiments
Q34015177	The fitness landscape of HIV-1 gag: advanced modeling approaches and validation of model predictions by in vitro testing
Q90847629	The folded X-pattern is not necessarily a statistical signature of decision confidence
Q35543054	The formation of multi-synaptic connections by the interaction of synaptic and structural plasticity and their functional consequences
Q92982354	The formation of preference in risky choice
Q25255083	The fragile breakage versus random breakage models of chromosome evolution
Q41862751	The free energy landscape of dimerization of a membrane protein, NanC.
Q27333830	The free energy landscape of small molecule unbinding
Q28539594	The free energy profile of tubulin straight-bent conformational changes, with implications for microtubule assembly and drug discovery
Q108792233	The functional role of sequentially neuromodulated synaptic plasticity in behavioural learning
Q28541827	The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates
Q27330260	The generation of phase differences and frequency changes in a network model of inferior olive subthreshold oscillations
Q30845088	The generation of promoter-mediated transcriptional noise in bacteria
Q64083788	The genetic basis for adaptation of model-designed syntrophic co-cultures
Q96693012	The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies
Q28764019	The genome: An outsider's view
Q24811526	The genomic pattern of tDNA operon expression in E. coli
Q36291540	The genotype-phenotype map of an evolving digital organism.
Q64069340	The gradient of the reinforcement landscape influences sensorimotor learning
Q33426380	The homeostasis of Plasmodium falciparum-infected red blood cells
Q89574513	The hourglass organization of the Caenorhabditis elegans connectome
Q21145696	The human connectome: A structural description of the human brain
Q34565997	The human functional brain network demonstrates structural and dynamical resilience to targeted attack
Q33285035	The human genomic melting map.
Q94511946	The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth
Q30956838	The hydrophobic temperature dependence of amino acids directly calculated from protein structures
Q92251662	The impact of DNA methylation on the cancer proteome
Q27324546	The impact of a ligand binding on strand migration in the SAM-I riboswitch
Q33548792	The impact of contact tracing in clustered populations
Q34236587	The impact of imitation on vaccination behavior in social contact networks
Q113309094	The impact of individual perceptual and cognitive factors on collective states in a data-driven fish school model
Q112431420	The impact of interactions on invasion and colonization resistance in microbial communities
Q113309195	The impact of local assembly rules on RNA packaging in a T = 1 satellite plant virus
Q87758193	The impact of news exposure on collective attention in the United States during the 2016 Zika epidemic
Q28481511	The impact of oxygen on metabolic evolution: a chemoinformatic investigation
Q34311536	The impact of phenotypic switching on glioblastoma growth and invasion
Q57091932	The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh
Q89233762	The impact of temporal sampling resolution on parameter inference for biological transport models
Q113308697	The impact of the spatial heterogeneity of resistant cells and fibroblasts on treatment response
Q113308899	The impact of whole genome duplications on the human gene regulatory networks
Q35753717	The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
Q52664409	The importance of geometry in the corneal micropocket angiogenesis assay.
Q89474906	The importance of mechanical constraints for proper polarization and psuedo-cleavage furrow generation in the early Caenorhabditis elegans embryo
Q113309157	The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout
Q113309089	The importance of urgency in decision making based on dynamic information
Q33379073	The inactivation principle: mathematical solutions minimizing the absolute work and biological implications for the planning of arm movements
Q28536153	The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients
Q43612848	The influence of astrocytes on the width of orientation hypercolumns in visual cortex: A computational perspective.
Q90262474	The influence of red blood cell deformability on hematocrit profiles and platelet margination
Q35151464	The influence of spatiotemporal structure of noisy stimuli in decision making
Q21092520	The influence of synaptic weight distribution on neuronal population dynamics
Q112680645	The influence of the crowding assumptions in biofilm simulations
Q111519099	The information theory of developmental pruning: Optimizing global network architectures using local synaptic rules
Q42658318	The ins and outs of vanillyl alcohol oxidase: Identification of ligand migration paths
Q28543031	The interaction between seasonality and pulsed interventions against malaria in their effects on the reproduction number
Q34697750	The interaction of vinculin with actin.
Q101468883	The interplay between cancer type, panel size and tumor mutational burden threshold in patient selection for cancer immunotherapy
Q97565400	The interplay between somatic and dendritic inhibition promotes the emergence and stabilization of place fields
Q113309188	The interplay between vaccination and social distancing strategies affects COVID19 population-level outcomes
Q64018805	The intrinsic dimension of protein sequence evolution
Q91508977	The invasion of de-differentiating cancer cells into hierarchical tissues
Q33255323	The ion channel inverse problem: neuroinformatics meets biophysics
Q113309232	The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study
Q34456047	The laminar cortex model: a new continuum cortex model incorporating laminar architecture.
Q106667293	The landscape of metabolic pathway dependencies in cancer cell lines
Q34388437	The landscape of the prion protein's structural response to mutation revealed by principal component analysis of multiple NMR ensembles
Q36260941	The language of geometry: Fast comprehension of geometrical primitives and rules in human adults and preschoolers
Q34276978	The layer-oriented approach to declarative languages for biological modeling
Q35008745	The lazy visual word form area: computational insights into location-sensitivity
Q113308644	The lexical categorization model: A computational model of left ventral occipito-temporal cortex activation in visual word recognition
Q64080134	The life history of learning: Demographic structure changes cultural outcomes
Q113309101	The limitations, dangers, and benefits of simple methods for testing identifiability
Q97677858	The location of the axon initial segment affects the bandwidth of spike initiation dynamics
Q33491534	The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data
Q64094967	The logic of ionic homeostasis: Cations are for voltage, but not for volume
Q42369009	The logic of the floral transition: Reverse-engineering the switch controlling the identity of lateral organs
Q43010847	The long and thorny road to publication in quality journals
Q27321596	The long and viscous road: uncovering nuclear diffusion barriers in closed mitosis
Q59353592	The low spike density of HIV may have evolved because of the effects of T helper cell depletion on affinity maturation
Q37487931	The making of the Women in Biology forum (WiB) at Bioclues
Q33258809	The many faces of protein-protein interactions: A compendium of interface geometry
Q113309066	The meaning of significant mean group differences for biomarker discovery
Q33508245	The mechanism of ubiquitination in the cullin-RING E3 ligase machinery: conformational control of substrate orientation
Q27329659	The mechanistic basis of Myxococcus xanthus rippling behavior and its physiological role during predation
Q115020738	The metastable brain associated with autistic-like traits of typically developing individuals
Q27324403	The minimal complexity of adapting agents increases with fitness
Q31158380	The missing link: Predicting connectomes from noisy and partially observed tract tracing data.
Q28471819	The modular organization of domain structures: insights into protein-protein binding
Q113309429	The modular organization of domain structures: insights into protein-protein binding
Q27335999	The modulation transfer function for speech intelligibility
Q35568167	The molecular clock of neutral evolution can be accelerated or slowed by asymmetric spatial structure
Q35034126	The molecular mechanism of ion-dependent gating in secondary transporters
Q27336215	The morphological identity of insect dendrites
Q33872116	The morphology of the rat vibrissal array: a model for quantifying spatiotemporal patterns of whisker-object contact
Q28539160	The natural history of biocatalytic mechanisms
Q30488184	The natural statistics of audiovisual speech
Q43147282	The need for centralization of computational biology resources
Q113308988	The network structure affects the fixation probability when it couples to the birth-death dynamics in finite population
Q35591155	The neuroglial potassium cycle during neurotransmission: role of Kir4.1 channels
Q34987978	The next generation of transcription factor binding site prediction
Q64082399	The nonlinear dynamics and fluctuations of mRNA levels in cell cycle coupled transcription
Q64109155	The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates
Q30410745	The opponent channel population code of sound location is an efficient representation of natural binaural sounds
Q33604795	The organization of local and distant functional connectivity in the human brain
Q27333222	The origin of behavioral bursts in decision-making circuitry
Q82049000	The origin of biological homochirality along with the origin of life
Q27329125	The origin of minus-end directionality and mechanochemistry of Ncd motors
Q21145353	The origins of lactase persistence in Europe
Q33301008	The origins of specificity in polyketide synthase protein interactions
Q33549707	The origins of time-delay in template biopolymerization processes
Q30580058	The ortholog conjecture is untestable by the current gene ontology but is supported by RNA sequencing data
Q28472769	The overlap of small molecule and protein binding sites within families of protein structures
Q27329756	The p7 protein of hepatitis C virus forms structurally plastic, minimalist ion channels
Q33320179	The peri-saccadic perception of objects and space
Q58803068	The permeation mechanism of organic cations through a CNG mimic channel
Q28542661	The pharmacodynamics of the p53-Mdm2 targeting drug Nutlin: the role of gene-switching noise
Q58730626	The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow
Q36330081	The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes
Q30437567	The presence of VEGF receptors on the luminal surface of endothelial cells affects VEGF distribution and VEGF signaling
Q35603273	The presence of nuclear cactus in the early Drosophila embryo may extend the dynamic range of the dorsal gradient
Q36331799	The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation.
Q113308738	The properties of human disease mutations at protein interfaces
Q34045721	The protective role of symmetric stem cell division on the accumulation of heritable damage
Q113308823	The quantitative basis for the redistribution of immobile bacterial lipoproteins to division septa
Q35603556	The quantitative methods boot camp: teaching quantitative thinking and computing skills to graduate students in the life sciences
Q21145348	The rat genome database curators: who, what, where, why
Q34220937	The rate of beneficial mutations surfing on the wave of a range expansion
Q28478627	The rates of protein synthesis and degradation account for the differential response of neurons to spaced and massed training protocols
Q35008767	The regional student group program of the ISCB student council: stories from the road
Q34033370	The regulation of ant colony foraging activity without spatial information
Q89876204	The relation between crosstalk and gene regulation form revisited
Q64120550	The relative contribution of color and material in object selection
Q99561509	The relative contributions of infectious and mitotic spread to HTLV-1 persistence
Q91507563	The research and development process for multiscale models of infectious disease systems
Q35120060	The rise and fall of HIV in high-prevalence countries: a challenge for mathematical modeling.
Q104753961	The risks of using the chi-square periodogram to estimate the period of biological rhythms
Q47141854	The role of Allee effect in modelling post resection recurrence of glioblastoma.
Q92589647	The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model
Q89759156	The role of adaptation in generating monotonic rate codes in auditory cortex
Q33813496	The role of additive neurogenesis and synaptic plasticity in a hippocampal memory model with grid-cell like input
Q113308970	The role of cell geometry and cell-cell communication in gradient sensing
Q108799597	The role of children in the spread of COVID-19: Using household data from Bnei Brak, Israel, to estimate the relative susceptibility and infectivity of children
Q113308726	The role of childrens’ vaccination for COVID-19—Pareto-optimal allocations of vaccines
Q28469058	The role of compensatory mutations in the emergence of drug resistance
Q112431468	The role of competition versus cooperation in microbial community coalescence
Q34167863	The role of conserved waters in conformational transitions of Q61H K-ras
Q58768373	The role of curvature feedback in the energetics and dynamics of lamprey swimming: A closed-loop model
Q21145379	The role of elastic stresses on leaf venation morphogenesis
Q33429039	The role of environmental transmission in recurrent avian influenza epidemics
Q34488291	The role of exposure history on HIV acquisition: insights from repeated low-dose challenge studies
Q28484777	The role of flexibility and conformational selection in the binding promiscuity of PDZ domains
Q47127918	The role of glutamate in neuronal ion homeostasis: A case study of spreading depolarization
Q33851558	The role of incoherent microRNA-mediated feedforward loops in noise buffering
Q30413832	The role of inhibition in a computational model of an auditory cortical neuron during the encoding of temporal information
Q91464333	The role of intracellular interactions in the collective polarization of tissues and its interplay with cellular geometry
Q55314602	The role of intracellular signaling in the stripe formation in engineered Escherichia coli populations.
Q34372287	The role of local backrub motions in evolved and designed mutations
Q27320561	The role of membrane-mediated interactions in the assembly and architecture of chemoreceptor lattices
Q113309153	The role of memory in non-genetic inheritance and its impact on cancer treatment resistance
Q28534712	The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state
Q28480404	The role of non-native interactions in the folding of knotted proteins
Q28384502	The role of oligomerization and cooperative regulation in protein function: the case of tryptophan synthase
Q33500136	The role of ongoing dendritic oscillations in single-neuron dynamics
Q28478618	The role of response elements organization in transcription factor selectivity: the IFN-β enhanceosome example
Q103745107	The role of sensory uncertainty in simple contour integration
Q34468863	The role of social contacts and original antigenic sin in shaping the age pattern of immunity to seasonal influenza
Q47548926	The role of spatial heterogeneity in the evolution of local and global infections of viruses.
Q89629173	The role of spatial structure in the evolution of viral innate immunity evasion: A diffusion-reaction cellular automaton model
Q41862740	The role of thalamic population synchrony in the emergence of cortical feature selectivity
Q33434464	The role of the Frank-Starling law in the transduction of cellular work to whole organ pump function: a computational modeling analysis
Q36292780	The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt
Q90663284	The role of the encapsulated cargo in microcompartment assembly
Q28543485	The roles of post-translational modifications in the context of protein interaction networks
Q28751147	The roots of bioinformatics
Q21145312	The roots of bioinformatics in ISMB
Q33649766	The roots of bioinformatics in protein evolution
Q21092521	The roots of bioinformatics in theoretical biology
Q33381576	The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function
Q35377813	The route of HIV escape from immune response targeting multiple sites is determined by the cost-benefit tradeoff of escape mutations
Q33929804	The self-limiting dynamics of TGF-β signaling in silico and in vitro, with negative feedback through PPM1A upregulation
Q50026772	The self-organization of plant microtubules inside the cell volume yields their cortical localization, stable alignment, and sensitivity to external cues.
Q35603351	The serotype distribution among healthy carriers before vaccination is essential for predicting the impact of pneumococcal conjugate vaccine on invasive disease
Q35866632	The siRNA Non-seed Region and Its Target Sequences Are Auxiliary Determinants of Off-Target Effects
Q35105564	The sign rule and beyond: boundary effects, flexibility, and noise correlations in neural population codes
Q42930251	The signal in the genomes
Q28472336	The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networks
Q35082171	The significance of the 2013 Nobel Prize in Chemistry and the challenges ahead
Q34633014	The social Bayesian brain: does mentalizing make a difference when we learn?
Q27322738	The spatial resolution of epidemic peaks
Q34426320	The spatial structure of stimuli shapes the timescale of correlations in population spiking activity.
Q27336443	The spatiotemporal pattern of Src activation at lipid rafts revealed by diffusion-corrected FRET imaging
Q113308399	The spectrum of covariance matrices of randomly connected recurrent neuronal networks with linear dynamics
Q28660974	The spirit of competition: to win or not to win
Q90777470	The spread of a wild plant pathogen is driven by the road network
Q33326977	The statistical neuroanatomy of frontal networks in the macaque
Q34071342	The statistics of bulk segregant analysis using next generation sequencing
Q64062631	The statistics of epidemic transitions
Q33276630	The stem cell population of the human colon crypt: analysis via methylation patterns
Q113308584	The stochastic logistic model with correlated carrying capacities reproduces beta-diversity metrics of microbial communities
Q34165655	The structural basis of ATP as an allosteric modulator
Q112282562	The structural coverage of the human proteome before and after AlphaFold
Q28539757	The structural pathway of interleukin 1 (IL-1) initiated signaling reveals mechanisms of oncogenic mutations and SNPs in inflammation and cancer
Q125475615	The structure and robustness of ecological networks with two interaction types
Q43299430	The structured 'low temperature' phase of the retinal population code.
Q112305594	The super repertoire of type IV effectors in the pangenome of Ehrlichia spp. provides insights into host-specificity and pathogenesis
Q100523114	The synergy of damage repair and retention promotes rejuvenation and prolongs healthy lifespans in cell lineages
Q33410777	The temporal winner-take-all readout
Q28542980	The thalidomide-binding domain of cereblon defines the CULT domain family and is a new member of the β-tent fold
Q35247990	The time scale of evolutionary innovation
Q30427202	The timing and targeting of treatment in influenza pandemics influences the emergence of resistance in structured populations
Q113238603	The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility
Q113309579	The transcriptional regulator CBP has defined spatial associations within interphase nuclei
Q33260998	The transcriptional regulator CBP has defined spatial associations within interphase nuclei.
Q104059271	The two kinds of free energy and the Bayesian revolution
Q34539706	The two sides of complement C3d: evolution of electrostatics in a link between innate and adaptive immunity
Q112561807	The unbiased estimation of the fraction of variance explained by a model
Q34539751	The underlying molecular and network level mechanisms in the evolution of robustness in gene regulatory networks
Q28546498	The universal statistical distributions of the affinity, equilibrium constants, kinetics and specificity in biomolecular recognition
Q34015184	The upside of failure: how regional student groups learn from their mistakes.
Q47162237	The use of ambient humidity conditions to improve influenza forecast
Q90356341	The use of mixture density networks in the emulation of complex epidemiological individual-based models
Q104791348	The value of decreasing the duration of the infectious period of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection
Q21145306	The vast, conserved mammalian lincRNome
Q112640694	The very early evolution of protein translocation across membranes
Q30489202	The voice of bats: how greater mouse-eared bats recognize individuals based on their echolocation calls
Q34085576	The what and where of adding channel noise to the Hodgkin-Huxley equations
Q41893192	The young PI buzz: learning from the organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.
Q126510544	The σB alternative sigma factor circuit modulates noise to generate different types of pulsing dynamics
Q30388845	Theoretical Insights into the Biophysics of Protein Bi-stability and Evolutionary Switches
Q34262981	Theoretical analysis of competing conformational transitions in superhelical DNA.
Q24813213	Theoretical analysis of pre-receptor image conditioning in weakly electric fish.
Q33809365	Theoretical analysis of the stress induced B-Z transition in superhelical DNA.
Q27333926	Theoretical model for cellular shapes driven by protrusive and adhesive forces
Q47228042	Theoretical perspectives on central chemosensitivity: CO2/H+-sensitive neurons in the locus coeruleus.
Q28550211	Theory and Experimental Validation of a Spatio-temporal Model of Chemotherapy Transport to Enhance Tumor Cell Kill
Q35225051	Theory of choice in bandit, information sampling and foraging tasks
Q34468889	Theory on the coupled stochastic dynamics of transcription and splice-site recognition
Q113308799	There are no equal opportunity infectors: Epidemiological modelers must rethink our approach to inequality in infection risk
Q28534069	Thermal adaptation of conformational dynamics in ribonuclease H
Q35612683	Thermal stabilization of dihydrofolate reductase using monte carlo unfolding simulations and its functional consequences
Q28729035	Thermodynamic basis for the emergence of genomes during prebiotic evolution
Q113238610	Thermodynamic constraints on the assembly and diversity of microbial ecosystems are different near to and far from equilibrium
Q35517750	Thermodynamic costs of information processing in sensory adaptation
Q61814655	Thermodynamic model of gene regulation for the Or59b olfactory receptor in Drosophila
Q33500126	Thermodynamic selection of steric zipper patterns in the amyloid cross-beta spine
Q33799123	Thermodynamic stability of histone H3 is a necessary but not sufficient driving force for its evolutionary conservation
Q28481731	Thermodynamic state ensemble models of cis-regulation
Q35683444	Thermodynamics and H2 Transfer in a Methanogenic, Syntrophic Community
Q33700661	Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
Q34769233	Theta coordinated error-driven learning in the hippocampus
Q36163635	Theta-Gamma Coding Meets Communication-through-Coherence: Neuronal Oscillatory Multiplexing Theories Reconciled
Q113309250	Theta-gamma coupling emerges from spatially heterogeneous cholinergic neuromodulation
Q91796501	Think: Theory for Africa
Q34481799	This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes
Q34055251	Thousands of rab GTPases for the cell biologist
Q27332411	Three people can synchronize as coupled oscillators during sports activities
Q35617695	Three-Dimensional Gradients of Cytokine Signaling between T Cells
Q113309371	Three-dimensional stochastic simulation of chemoattractant-mediated excitability in cells
Q113308743	Thunderstruck: The ACDC model of flexible sequences and rhythms in recurrent neural circuits
Q34042635	Time scale hierarchies in the functional organization of complex behaviors
Q90218675	Time scales and wave formation in non-linear spatial public goods games
Q35069137	Time scales in epigenetic dynamics and phenotypic heterogeneity of embryonic stem cells
Q21563513	Time to organize the bioinformatics resourceome
Q112558701	Time to revisit the endpoint dilution assay and to replace the TCID50 as a measure of a virus sample's infection concentration
Q100523116	Time varying methods to infer extremes in dengue transmission dynamics
Q30000087	Time-Course Gene Set Analysis for Longitudinal Gene Expression Data
Q100732624	Timescales of motor memory formation in dual-adaptation
Q35705681	Timing and Variability of Galactose Metabolic Gene Activation Depend on the Rate of Environmental Change
Q21145299	Timing of neuropeptide coupling determines synchrony and entrainment in the mammalian circadian clock
Q31151021	Timing over tuning: overcoming the shortcomings of a line attractor during a working memory task
Q28474857	Timing the emergence of resistance to anti-HIV drugs with large genetic barriers
Q113309381	Tinnitus-like “hallucinations” elicited by sensory deprivation in an entropy maximization recurrent neural network
Q27318564	Tipping the Scale from Disorder to Alpha-helix: Folding of Amphiphilic Peptides in the Presence of Macroscopic and Molecular Interfaces
Q27335281	Tipping the balance: robustness of tip cell selection, migration and fusion in angiogenesis
Q36234551	Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs.
Q92850198	Tissue-guided LASSO for prediction of clinical drug response using preclinical samples
Q34426375	Tissue-specific functional networks for prioritizing phenotype and disease genes
Q27316414	To Cooperate or Not to Cooperate: Why Behavioural Mechanisms Matter
Q21145327	To lyse or not to lyse: transient-mediated stochastic fate determination in cells infected by bacteriophages
Q113308406	To what extent naringenin binding and membrane depolarization shape mitoBK channel gating—A machine learning approach
Q30671562	ToPS: a framework to manipulate probabilistic models of sequence data
Q91189422	Tonic exploration governs both flexibility and lapses
Q112705414	Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data
Q28473553	Top-down analysis of temporal hierarchy in biochemical reaction networks
Q34945268	Top-down beta rhythms support selective attention via interlaminar interaction: a model
Q36362966	Top-down control of cortical gamma-band communication via pulvinar induced phase shifts in the alpha rhythm
Q64230236	Top-down inputs drive neuronal network rewiring and context-enhanced sensory processing in olfaction
Q35224449	Top-down inputs enhance orientation selectivity in neurons of the primary visual cortex during perceptual learning
Q21092570	Topic pages: PLoS Computational Biology meets Wikipedia
Q27335563	Topography of extracellular matrix mediates vascular morphogenesis and migration speeds in angiogenesis
Q35877615	Topological Phenotypes Constitute a New Dimension in the Phenotypic Space of Leaf Venation Networks
Q113308455	Topological Sholl descriptors for neuronal clustering and classification
Q55139267	Topological and statistical analyses of gene regulatory networks reveal unifying yet quantitatively different emergent properties.
Q33916646	Topological cluster analysis reveals the systemic organization of the Caenorhabditis elegans connectome
Q112610446	Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis
Q36179237	Topology, Cross-Frequency, and Same-Frequency Band Interactions Shape the Generation of Phase-Amplitude Coupling in a Neural Mass Model of a Cortical Column
Q113309263	Topology-preserving smoothing of retinotopic maps
Q38657547	TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions.
Q35238152	Torsion-mediated interaction between adjacent genes
Q64103494	Toward a 3D model of phyllotaxis based on a biochemically plausible auxin-transport mechanism
Q21563510	Toward a census of bacteria in soil
Q113309608	Toward a census of bacteria in soil
Q33417620	Toward a detailed description of the thermally induced dynamics of the core promoter
Q53831681	Toward a theory of coactivation patterns in excitable neural networks.
Q126176087	Toward an optimal contraception dosing strategy
Q113309517	Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins
Q31106116	Towards Identifying and Reducing the Bias of Disease Information Extracted from Search Engine Data.
Q36015435	Towards Increasing the Clinical Relevance of In Silico Methods to Predict Pathogenic Missense Variants
Q28551159	Towards a Molecular Understanding of the Link between Imatinib Resistance and Kinase Conformational Dynamics
Q41566952	Towards a category theory approach to analogy: Analyzing re-representation and acquisition of numerical knowledge.
Q94658026	Towards a data-driven characterization of behavioral changes induced by the seasonal flu
Q21145351	Towards a mathematical theory of cortical micro-circuits
Q60054249	Towards a molecular basis of ubiquitin signaling: A dual-scale simulation study of ubiquitin dimers
Q113308458	Towards a more general understanding of the algorithmic utility of recurrent connections
Q28476698	Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach
Q36350771	Towards a theory of cortical columns: From spiking neurons to interacting neural populations of finite size
Q33939811	Towards an evolutionary model of transcription networks
Q33281289	Towards complete sets of farnesylated and geranylgeranylated proteins
Q97550396	Towards optogenetic vision restoration with high resolution
Q34844972	Towards predicting the response of a solid tumour to chemotherapy and radiotherapy treatments: clinical insights from a computational model
Q28475181	Towards prediction of metabolic products of polyketide synthases: an in silico analysis
Q21092562	Towards reproducible descriptions of neuronal network models
Q28538838	Towards structural systems pharmacology to study complex diseases and personalized medicine
Q30653362	Towards systematic discovery of signaling networks in budding yeast filamentous growth stress response using interventional phosphorylation data
Q112648603	Towards the prediction of non-peptidic epitopes
Q60310166	Tox_(R)CNN: Deep learning-based nuclei profiling tool for drug toxicity screening
Q93011681	Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations
Q55259325	Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models.
Q94468308	Tracheal branching in ants is area-decreasing, violating a central assumption of network transport models
Q42828880	Tracing the evolution of lineage-specific transcription factor binding sites in a birth-death framework
Q92956454	Tracking Pseudomonas aeruginosa transmissions due to environmental contamination after discharge in ICUs using mathematical models
Q101154808	Tracking and predicting U.S. influenza activity with a real-time surveillance network
Q113309097	Tracking calcium dynamics from individual neurons in behaving animals
Q104573959	Tracking collective cell motion by topological data analysis
Q90592184	Tracking progress towards malaria elimination in China: Individual-level estimates of transmission and its spatiotemporal variation using a diffusion network approach
Q113308497	Tracking the contribution of inductive bias to individualised internal models
Q28395259	Tracking the sleep onset process: an empirical model of behavioral and physiological dynamics
Q47138012	Tracking urban human activity from mobile phone calling patterns
Q46004261	Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire.
Q97092997	Trade-off between local transmission and long-range dispersal drives infectious disease outbreak size in spatially structured populations
Q34625302	Trade-off between multiple constraints enables simultaneous formation of modules and hubs in neural systems
Q33518462	Trade-off between positive and negative design of protein stability: from lattice models to real proteins
Q33954338	Trade-off between responsiveness and noise suppression in biomolecular system responses to environmental cues
Q49925023	Trade-off between synergy and efficacy in combinations of HIV-1 latency-reversing agents.
Q28477808	Trade-offs and constraints in allosteric sensing
Q33521300	Tradeoff between stability and multispecificity in the design of promiscuous proteins
Q34671748	Trading speed and accuracy by coding time: a coupled-circuit cortical model
Q113309655	Traditional Biomolecular Structure Determination by NMR Spectroscopy Allows for Major Errors
Q25257832	Traditional biomolecular structure determination by NMR spectroscopy allows for major errors
Q27331579	Traffic instabilities in self-organized pedestrian crowds
Q35940342	Training Excitatory-Inhibitory Recurrent Neural Networks for Cognitive Tasks: A Simple and Flexible Framework
Q36054069	Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability
Q28477321	Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli
Q60932163	Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours
Q113308922	Transcranial direct current stimulation of cerebellum alters spiking precision in cerebellar cortex: A modeling study of cellular responses
Q34607806	Transcranial electrical stimulation accelerates human sleep homeostasis
Q34845075	Transcription factor binding profiles reveal cyclic expression of human protein-coding genes and non-coding RNAs.
Q33245075	Transcription factor map alignment of promoter regions
Q35810558	Transcriptional Bursting in Gene Expression: Analytical Results for General Stochastic Models
Q113309593	Transcriptional Dynamics of the Embryonic Stem Cell Switch
Q113309565	Transcriptional Regulation by Competing Transcription Factor Modules
Q36237770	Transcriptional and Post-Transcriptional Regulation of Thrombospondin-1 Expression: A Computational Model.
Q112725363	Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance
Q33257709	Transcriptional dynamics of the embryonic stem cell switch
Q35462820	Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response
Q28476104	Transcriptional profiling of the dose response: a more powerful approach for characterizing drug activities
Q33265217	Transcriptional regulation by competing transcription factor modules
Q31129352	Transcriptional regulation of lineage commitment--a stochastic model of cell fate decisions
Q28478116	Transcriptional regulation: effects of promoter proximal pausing on speed, synchrony and reliability
Q33519510	Transcriptome and proteome exploration to model translation efficiency and protein stability in Lactococcus lactis
Q113308684	Transcriptome diversity is a systematic source of variation in RNA-sequencing data
Q34649536	Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq
Q35577014	Transcriptome sequencing reveals potential mechanism of cryptic 3' splice site selection in SF3B1-mutated cancers
Q91986612	Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments
Q34071331	Transcriptomic coordination in the human metabolic network reveals links between n-3 fat intake, adipose tissue gene expression and metabolic health
Q92846442	Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes
Q47136596	Transcriptomic correlates of neuron electrophysiological diversity
Q113309196	Transcriptomic entropy benchmarks stem cell-derived cardiomyocyte maturation against endogenous tissue at single cell level
Q112714932	Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species
Q33703532	Transcriptomics technologies.
Q101154875	Transfer learning enables prediction of CYP2D6 haplotype function
Q27325767	Transformation of context-dependent sensory dynamics into motor behavior
Q27323776	Transformation of stimulus correlations by the retina
Q102373337	Transforming the study of organisms: Phenomic data models and knowledge bases
Q35885765	Transient Accumulation of NO2- and N2O during Denitrification Explained by Assuming Cell Diversification by Stochastic Transcription of Denitrification Genes
Q113309602	Transient Resetting: A Novel Mechanism for Synchrony and Its Biological Examples
Q92729859	Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs
Q28469044	Transient calcium and dopamine increase PKA activity and DARPP-32 phosphorylation
Q33570971	Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data
Q33331403	Transient cognitive dynamics, metastability, and decision making
Q92749851	Transient crosslinking kinetics optimize gene cluster interactions
Q33255326	Transient resetting: a novel mechanism for synchrony and its biological examples
Q33842312	Transition from persistent to anti-persistent correlations in postural sway indicates velocity-based control
Q58709816	Transition state characteristics during cell differentiation
Q113309678	Transition to Quorum Sensing in an Agrobacterium Population: A Stochastic Model
Q24814326	Transition to quorum sensing in an Agrobacterium population: A stochastic model
Q90716717	Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain
Q28478443	Translating clinical findings into knowledge in drug safety evaluation--drug induced liver injury prediction system (DILIps)
Q33330867	Translational systems biology of inflammation
Q36412336	Transmembrane helical interactions in the CFTR channel pore.
Q34058033	Transmembrane helix dynamics of bacterial chemoreceptors supports a piston model of signalling.
Q28473900	Transmembrane topology and signal peptide prediction using dynamic bayesian networks
Q107749731	Transmission delays and frequency detuning can regulate information flow between brain regions
Q56395278	Transmission of temporally correlated spike trains through synapses with short-term depression
Q34055207	Transmission selects for HIV-1 strains of intermediate virulence: a modelling approach
Q35987410	Traveling Pulses for a Two-Species Chemotaxis Model
Q113308769	Traveling waves in the prefrontal cortex during working memory
Q28476227	Treatment-mediated alterations in HIV fitness preserve CD4+ T cell counts but have minimal effects on viral load
Q113308464	Trial-by-trial predictions of subjective time from human brain activity
Q34998167	Trial-type dependent frames of reference for value comparison
Q113309312	Trip duration drives shift in travel network structure with implications for the predictability of spatial disease spread
Q64058464	Tuft dendrites of pyramidal neurons operate as feedback-modulated functional subunits
Q113309040	Tumor cell intrinsic and extrinsic features predict prognosis in estrogen receptor positive breast cancer
Q28473259	Tumor growth rate determines the timing of optimal chronomodulated treatment schedules
Q112615459	Tumor hepatitis B virus RNA identifies a clinically and molecularly distinct subset of hepatocellular carcinoma
Q112570184	Tumor immune cell clustering and its association with survival in African American women with ovarian cancer
Q98576625	Tumor vascular status controls oxygen delivery facilitated by infused polymerized hemoglobins with varying oxygen affinity
Q33434447	Tumor-immune interaction, surgical treatment, and cancer recurrence in a mathematical model of melanoma
Q35004433	Tunable stochastic pulsing in the Escherichia coli multiple antibiotic resistance network from interlinked positive and negative feedback loops
Q36029428	Tuning Curves for Arm Posture Control in Motor Cortex Are Consistent with Random Connectivity
Q100310742	Tuning network dynamics from criticality to an asynchronous state
Q34524579	Tuning promoter strength through RNA polymerase binding site design in Escherichia coli
Q34109733	Tuning the mammalian circadian clock: robust synergy of two loops.
Q102049196	Twelve quick steps for genome assembly and annotation in the classroom
Q92772465	Twelve quick tips for designing sound dynamical models for bioprocesses
Q113308788	Twelve quick tips for software design
Q113308983	TwinCons: Conservation score for uncovering deep sequence similarity and divergence
Q27319575	Twisting right to left: A…A mismatch in a CAG trinucleotide repeat overexpansion provokes left-handed Z-DNA conformation
Q28478569	Two birds with one stone? Possible dual-targeting H1N1 inhibitors from traditional Chinese medicine
Q64895100	Two critical positions in zinc finger domains are heavily mutated in three human cancer types.
Q36286224	Two dynamic regimes in the human gut microbiome
Q34733523	Two misfolding routes for the prion protein around pH 4.5.
Q41677036	Two passive mechanical conditions modulate power generation by the outer hair cells
Q113308501	Two types of critical cell density for mechanical elimination of abnormal cell clusters from epithelial tissue
Q27320135	Two-dimensionality of yeast colony expansion accompanied by pattern formation
Q96032473	Two-step mechanism of J-domain action in driving Hsp70 function
Q96165154	Two-variable nullcline analysis of ionic general equilibrium predicts calcium homeostasis in ventricular myocytes
Q89876146	Tximeta: Reference sequence checksums for provenance identification in RNA-seq
Q113309670	ULTRASENSITIZATION Switch-like Regulation of Cellular Signalling by Transcriptional Induction
Q33279151	UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model
Q34440603	Ubiquitin dynamics in complexes reveal molecular recognition mechanisms beyond induced fit and conformational selection
Q113309627	Ultra-fast Evaluation of Protein Energies Directly from Sequence
Q30355047	Ultra-fast evaluation of protein energies directly from sequence
Q113308811	Ultrafast population coding and axo-somatic compartmentalization
Q34945303	Ultrasensitivity in phosphorylation-dephosphorylation cycles with little substrate
Q24811827	Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction
Q47145699	Un-gating and allosteric modulation of a pentameric ligand-gated ion channel captured by molecular dynamics.
Q35746477	Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data
Q28553092	Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories
Q104573936	Unbiased and efficient log-likelihood estimation with inverse binomial sampling
Q35233625	Unbiased functional clustering of gene variants with a phenotypic-linkage network
Q34064167	Unbiased simulations reveal the inward-facing conformation of the human serotonin transporter and Na(+) ion release
Q113309145	Uncertainty quantification and sensitivity analysis of COVID-19 exit strategies in an individual-based transmission model
Q113308643	Uncertainty quantification in cerebral circulation simulations focusing on the collateral flow: Surrogate model approach with machine learning
Q92726746	Uncertainty reduction in biochemical kinetic models: Enforcing desired model properties
Q36129780	Uncertainty-Dependent Extinction of Fear Memory in an Amygdala-mPFC Neural Circuit Model.
Q100391619	Uncertainty-driven regulation of learning and exploration in adolescents: A computational account
Q113308782	Uncertainty–guided learning with scaled prediction errors in the basal ganglia
Q28542470	Uncoupled analysis of stochastic reaction networks in fluctuating environments
Q90743068	Uncoupling the roles of firing rates and spike bursts in shaping the STN-GPe beta band oscillations
Q30425881	Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma
Q33325887	Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics
Q90942796	Uncovering and characterizing splice variants associated with survival in lung cancer patients
Q36380044	Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach
Q100499596	Uncovering drivers of dose-dependence and individual variation in malaria infection outcomes
Q64109842	Uncovering functional signature in neural systems via random matrix theory
Q33339388	Uncovering interactions in the frequency domain.
Q28481332	Uncovering the dynamics of cardiac systems using stochastic pacing and frequency domain analyses
Q91226202	Uncovering the subtype-specific temporal order of cancer pathway dysregulation
Q34649524	Under-dominance constrains the evolution of negative autoregulation in diploids
Q26766543	Understanding Genotype-Phenotype Effects in Cancer via Network Approaches
Q30152934	Understanding Voltage Gating of Providencia stuartii Porins at Atomic Level
Q30474396	Understanding auditory spectro-temporal receptive fields and their changes with input statistics by efficient coding principles
Q113308622	Understanding glioblastoma invasion using physically-guided neural networks with internal variables
Q115020704	Understanding molecular mechanisms and predicting phenotypic effects of pathogenic tubulin mutations
Q98562684	Understanding multivariate brain activity: Evaluating the effect of voxelwise noise correlations on population codes in functional magnetic resonance imaging
Q64094973	Understanding narwhal diving behaviour using Hidden Markov Models with dependent state distributions and long range dependence
Q113308705	Understanding photosynthetic biofilm productivity and structure through 2D simulation
Q30375371	Understanding pitch perception as a hierarchical process with top-down modulation.
Q33466794	Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation
Q35052996	Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations
Q43256402	Understanding the degradation of hominid gene control
Q34795406	Understanding the molecular determinants driving the immunological specificity of the protective pilus 2a backbone protein of group B streptococcus
Q33981241	Understanding the origins of bacterial resistance to aminoglycosides through molecular dynamics mutational study of the ribosomal A-site
Q28539835	Understanding the sub-cellular dynamics of silicon transportation and synthesis in diatoms using population-level data and computational optimization
Q35067178	Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions
Q27335050	Unfolding simulations reveal the mechanism of extreme unfolding cooperativity in the kinetically stable alpha-lytic protease
Q36395773	Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Q90135375	Unified feature association networks through integration of transcriptomic and proteomic data
Q46957503	Unified thalamic model generates multiple distinct oscillations with state-dependent entrainment by stimulation.
Q30464574	Unifying time to contact estimation and collision avoidance across species
Q36269542	Unifying view of mechanical and functional hotspots across class A GPCRs.
Q34408727	Universal count correction for high-throughput sequencing
Q42334194	Universal features of dendrites through centripetal branch ordering
Q30396482	Universal or Specific? A Modeling-Based Comparison of Broad-Spectrum Influenza Vaccines against Conventional, Strain-Matched Vaccines
Q28710477	Universal pacemaker of genome evolution
Q113309142	Universal risk phenotype of US counties for flu-like transmission to improve county-specific COVID-19 incidence forecasts
Q58001638	Universally Sloppy Parameter Sensitivities in Systems Biology Models
Q21145658	Universally sloppy parameter sensitivities in systems biology models
Q113309344	Universally valid reduction of multiscale stochastic biochemical systems using simple non-elementary propensities
Q47140390	Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators
Q108792521	Unraveling ChR2-driven stochastic Ca2+ dynamics in astrocytes: A call for new interventional paradigms
Q28662017	Unraveling adaptation in eukaryotic pathways: lessons from protocells
Q21145374	Unraveling protein networks with power graph analysis
Q58768392	Unraveling the mechanism of the cadherin-catenin-actin catch bond
Q97565671	Unravelling the γ-butyrolactone network in Streptomyces coelicolor by computational ensemble modelling
Q36167655	Unsupervised Learning in an Ensemble of Spiking Neural Networks Mediated by ITDP.
Q34778439	Unsupervised clustering of subcellular protein expression patterns in high-throughput microscopy images reveals protein complexes and functional relationships between proteins
Q64941044	Unsupervised clustering of temporal patterns in high-dimensional neuronal ensembles using a novel dissimilarity measure.
Q113308908	Unsupervised discovery of dynamic cell phenotypic states from transmitted light movies
Q64068077	Unsupervised extraction of epidemic syndromes from participatory influenza surveillance self-reported symptoms
Q35220784	Unsupervised feature learning improves prediction of human brain activity in response to natural images
Q113309327	Unsupervised learning for robust working memory
Q27322392	Unsupervised learning of cone spectral classes from natural images
Q113309536	Unsupervised learning of visual features through Spike Timing Dependent Plasticity
Q27339528	Unsupervised learning of visual features through spike timing dependent plasticity
Q27317313	Untangling Brain-Wide Dynamics in Consciousness by Cross-Embedding
Q33761261	Untangling the Interplay between Epidemic Spread and Transmission Network Dynamics
Q113309656	Unusual Intron Conservation Near Tissue-regulated Exons Found by Splicing Microarrays
Q25255747	Unusual intron conservation near tissue-regulated exons found by splicing microarrays
Q91986532	Unveiling dynamic metabolic signatures in human induced pluripotent and neural stem cells
Q113309220	Unveiling functions of the visual cortex using task-specific deep neural networks
Q35224554	Unveiling time in dose-response models to infer host susceptibility to pathogens.
Q113308641	Updating age-specific contact structures to match evolving demography in a dynamic mathematical model of tuberculosis vaccination
Q41324297	Upregulation of an inward rectifying K+ channel can rescue slow Ca2+ oscillations in K(ATP) channel deficient pancreatic islets
Q35989796	Ups and Downs of Poised RNA Polymerase II in B-Cells
Q112647083	Urgent need for consistent standards in functional enrichment analysis
Q34325423	Use it and improve it or lose it: interactions between arm function and use in humans post-stroke
Q100499601	Use of Angiotensin-Converting Enzyme Inhibitors and Angiotensin II Receptor Blockers During the COVID-19 Pandemic: A Modeling Analysis
Q113308875	Use of Raman and Raman optical activity to extract atomistic details of saccharides in aqueous solution
Q57061672	Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine
Q24816465	Use of artificial genomes in assessing methods for atypical gene detection
Q36264858	Use of chiral cell shape to ensure highly directional swimming in trypanosomes
Q21145334	Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data
Q35144962	Use of long term molecular dynamics simulation in predicting cancer associated SNPs
Q51148542	Use of temperature to improve West Nile virus forecasts.
Q101568563	Using B cell receptor lineage structures to predict affinity
Q36242447	Using Chemical Reaction Kinetics to Predict Optimal Antibiotic Treatment Strategies
Q31112925	Using Combined Diagnostic Test Results to Hindcast Trends of Infection from Cross-Sectional Data.
Q29126350	Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts
Q113309435	Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of H.pylori and P.falciparum
Q36182838	Using Matrix and Tensor Factorizations for the Single-Trial Analysis of Population Spike Trains
Q112726787	Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa
Q27316861	Using an Insect Mushroom Body Circuit to Encode Route Memory in Complex Natural Environments
Q30670257	Using biological pathway data with paxtools
Q112718204	Using de novo assembly to identify structural variation of eight complex immune system gene regions
Q112725853	Using deep neural networks to evaluate object vision tasks in rats
Q33619016	Using entropy maximization to understand the determinants of structural dynamics beyond native contact topology
Q113309000	Using ephaptic coupling to estimate the synaptic cleft resistivity of the calyx of Held synapse
Q28473498	Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity
Q28480572	Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer
Q96836537	Using information theory to optimise epidemic models for real-time prediction and estimation
Q101348739	Using interactive digital notebooks for bioscience and informatics education
Q33308253	Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum
Q113309249	Using mobility data in the design of optimal lockdown strategies for the COVID-19 pandemic
Q28484586	Using molecular mechanics to predict bulk material properties of fibronectin fibers
Q28478631	Using multiple microenvironments to find similar ligand-binding sites: application to kinase inhibitor binding
Q33419808	Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast
Q112063333	Using neural networks to mine text and predict metabolic traits for thousands of microbes
Q57951395	Using phylogeny to improve genome wide distant homology recognition
Q33269791	Using phylogeny to improve genome-wide distant homology recognition
Q113308907	Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations
Q117219093	Using pose estimation to identify regions and points on natural history specimens
Q33548788	Using pre-existing microarray datasets to increase experimental power: application to insulin resistance
Q112726789	Using prototyping to choose a bioinformatics workflow management system
Q52586083	Using pseudoalignment and base quality to accurately quantify microbial community composition.
Q124016883	Using real-time data to guide decision-making during an influenza pandemic: A modelling analysis
Q28476187	Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites
Q28485393	Using steered molecular dynamics to predict and assess Hsp70 substrate-binding domain mutants that alter prion propagation
Q30408153	Using structure to explore the sequence alignment space of remote homologs
Q112578603	Using test positivity and reported case rates to estimate state-level COVID-19 prevalence and seroprevalence in the United States
Q90458682	Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants
Q26261238	Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources
Q112585793	Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification
Q61799981	Using the drug-protein interactome to identify anti-ageing compounds for humans
Q113308655	Using topic modeling to detect cellular crosstalk in scRNA-seq
Q28476782	Using transcription modules to identify expression clusters perturbed in Williams-Beuren syndrome
Q123129554	Using ‘sentinel’ plants to improve early detection of invasive plant pathogens
Q31147883	Utility and Limitations of Using Gene Expression Data to Identify Functional Associations
Q28537776	Utilizing a dynamical description of IspH to aid in the development of novel antimicrobial drugs
Q61800423	Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks
Q99211811	VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution
Q92589636	VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning
Q30366195	VASP-E: specificity annotation with a volumetric analysis of electrostatic isopotentials.
Q33683387	VASP: a volumetric analysis of surface properties yields insights into protein-ligand binding specificity
Q30000686	VBA: a probabilistic treatment of nonlinear models for neurobiological and behavioural data
Q112721211	VCF2CAPS-A high-throughput CAPS marker design from VCF files and its test-use on a genotyping-by-sequencing (GBS) dataset
Q35852353	VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.
Q28552560	Validated Predictions of Metabolic Energy Consumption for Submaximal Effort Movement
Q112609217	Validation and tuning of in situ transcriptomics image processing workflows with crowdsourced annotations
Q102070871	Validation of DBFOLD: An efficient algorithm for computing folding pathways of complex proteins
Q35586852	Validation of skeletal muscle cis-regulatory module predictions reveals nucleotide composition bias in functional enhancers
Q113308642	Validation-based model selection for 13C metabolic flux analysis with uncertain measurement errors
Q104285939	Value-complexity tradeoff explains mouse navigational learning
Q30754874	VarWalker: personalized mutation network analysis of putative cancer genes from next-generation sequencing data
Q55317350	Variability in pulmonary vein electrophysiology and fibrosis determines arrhythmia susceptibility and dynamics.
Q28539829	Variability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stresses
Q42290355	Variable habitat conditions drive species covariation in the human microbiota
Q92750027	Variation in plastic responses to light results from selection in different competitive environments-A game theoretical approach using virtual plants
Q55280272	Variation of mutational burden in healthy human tissues suggests non-random strand segregation and allows measuring somatic mutation rates.
Q28545060	Variations in the binding pocket of an inhibitor of the bacterial division protein FtsZ across genotypes and species
Q34845380	Variations within class-A β-lactamase physiochemical properties reflect evolutionary and environmental patterns, but not antibiotic specificity
Q93150081	Vector bionomics and vectorial capacity as emergent properties of mosquito behaviors and ecology
Q98471561	Vector genetics, insecticide resistance and gene drives: An agent-based modeling approach to evaluate malaria transmission and elimination
Q64232946	Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion
Q41911516	Versatility and invariance in the evolution of homologous heteromeric interfaces
Q30981771	Vertical binocular disparity is encoded implicitly within a model neuronal population tuned to horizontal disparity and orientation.
Q27329612	Very slow search and reach: failure to maximize expected gain in an eye-hand coordination task
Q35514034	Vesicular stomatitis virus polymerase's strong affinity to its template suggests exotic transcription models
Q42375672	Vicus: Exploiting local structures to improve network-based analysis of biological data.
Q21045423	Viral Phylodynamics
Q36174023	Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency
Q113309580	Viral and Latent Reservoir Persistence in HIV-1 Infected Patients on Therapy
Q28469057	Viral and latent reservoir persistence in HIV-1-infected patients on therapy
Q28486073	Viral capsid proteins are segregated in structural fold space
Q34325431	Viral perturbations of host networks reflect disease etiology
Q28472641	Viral population estimation using pyrosequencing
Q28732259	Viral proteins acquired from a host converge to simplified domain architectures
Q34961642	Viral proteins originated de novo by overprinting can be identified by codon usage: application to the "gene nursery" of Deltaretroviruses
Q28541589	Viral quasispecies assembly via maximal clique enumeration
Q112303279	Viral surface geometry shapes influenza and coronavirus spike evolution through antibody pressure
Q112297818	ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways
Q34325461	Virtual patients and sensitivity analysis of the Guyton model of blood pressure regulation: towards individualized models of whole-body physiology
Q58601374	Virus and CTL dynamics in the extrafollicular and follicular tissue compartments in SIV-infected macaques
Q34270378	Virus capsid dissolution studied by microsecond molecular dynamics simulations
Q35018020	Virus encoded MHC-like decoys diversify the inhibitory KIR repertoire.
Q28487427	Virus neutralisation: new insights from kinetic neutralisation curves
Q34085593	Virus replication strategies and the critical CTL numbers required for the control of infection
Q110700036	Viscoelastic properties of wheat gluten in a molecular dynamics study
Q34557957	Visual data mining of biological networks: one size does not fit all.
Q34979335	Visual nonclassical receptive field effects emerge from sparse coding in a dynamical system
Q98567176	Visual perception of liquids: Insights from deep neural networks
Q113309373	Visual perception of texture regularity: Conjoint measurements and a wavelet response-distribution model
Q59810719	Visual physiology of the layer 4 cortical circuit in silico
Q28728474	Visualization and analysis of 3D microscopic images
Q27316468	Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0
Q100529666	Visually guided homing of bumblebees in ambiguous situations: A behavioural and modelling study
Q33750129	Vulnerabilities in the tau network and the role of ultrasensitive points in tau pathophysiology
Q28553622	Vulnerability-Based Critical Neurons, Synapses, and Pathways in the Caenorhabditis elegans Connectome
Q28822241	WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning
Q34042623	War of ontology worlds: mathematics, computer code, or Esperanto?
Q34236558	Warm body temperature facilitates energy efficient cortical action potentials
Q30793257	Waste not, want not: why rarefying microbiome data is inadmissible
Q90076587	Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics
Q64099420	Weak electric fields promote resonance in neuronal spiking activity: Analytical results from two-compartment cell and network models
Q33594363	Weak noise in neurons may powerfully inhibit the generation of repetitive spiking but not its propagation
Q34499332	Weakly circadian cells improve resynchrony
Q33945392	Web-based computational chemistry education with CHARMMing I: Lessons and tutorial
Q33945399	Web-based computational chemistry education with CHARMMing II: Coarse-grained protein folding
Q33946303	Web-based computational chemistry education with CHARMMing III: Reduction potentials of electron transfer proteins
Q21145362	Webb Miller and Trey Ideker to receive top international bioinformatics awards for 2009 from the International Society for Computational Biology
Q34407753	Weighted frequent gene co-expression network mining to identify genes involved in genome stability
Q25257739	Welcome to PLoS Computational Biology “Education”
Q35857315	Wham: Identifying Structural Variants of Biological Consequence
Q35702980	What Can Interaction Webs Tell Us About Species Roles?
Q35918009	What Population Reveals about Individual Cell Identity: Single-Cell Parameter Estimation of Models of Gene Expression in Yeast
Q30488483	What a plant sounds like: the statistics of vegetation echoes as received by echolocating bats
Q113141582	What are housekeeping genes?
Q33301004	What are lightness illusions and why do we see them?
Q34229556	What can causal networks tell us about metabolic pathways?
Q34325436	What can systems theory of networks offer to biology?
Q28751894	What do I want from the publisher of the future?
Q33518468	What do transitive inference and class inclusion have in common? Categorical (co)products and cognitive development
Q48193332	What drives the perceptual change resulting from speech motor adaptation? Evaluation of hypotheses in a Bayesian modeling framework.
Q34426308	What evidence is there for the homology of protein-protein interactions?
Q21145363	What is stochastic resonance? Definitions, misconceptions, debates, and its relevance to biology
Q35598390	What is the most realistic single-compartment model of spike initiation?
Q34539716	What is the role of motif D in the nucleotide incorporation catalyzed by the RNA-dependent RNA polymerase from poliovirus?
Q125368582	What lies underneath: Precise classification of brain states using time-dependent topological structure of dynamics
Q35539958	What makes a protein sequence a prion?
Q89574536	What makes or breaks a campaign to stop an invading plant pathogen?
Q24811430	What makes ribosome-mediated transcriptional attenuation sensitive to amino acid limitation?
Q57472220	What to know before forecasting the flu
Q36114104	When Does Model-Based Control Pay Off?
Q36223693	When Optimal Feedback Control Is Not Enough: Feedforward Strategies Are Required for Optimal Control with Active Sensing
Q113308890	When and why direct transmission models can be used for environmentally persistent pathogens
Q30913145	When can species abundance data reveal non-neutrality?
Q36356740	When do correlations increase with firing rates in recurrent networks?
Q35554211	When less is more: non-monotonic spike sequence processing in neurons
Q110751741	When shared concept cells support associations: Theory of overlapping memory engrams
Q94512089	When two are better than one: Modeling the mechanisms of antibody mixtures
Q92121902	Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation
Q33307182	Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
Q113309443	Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
Q35880788	Where's the Noise? Key Features of Spontaneous Activity and Neural Variability Arise through Learning in a Deterministic Network
Q38030527	Which of our modeling predictions are robust?
Q113746383	WhichTF is functionally important in your open chromatin data?
Q27324247	Whisker movements reveal spatial attention: a unified computational model of active sensing control in the rat
Q97565392	Whole cell biophysical modeling of codon-tRNA competition reveals novel insights related to translation dynamics
Q112431506	Whole community invasions and the integration of novel ecosystems
Q61798360	Whole genomes define concordance of matched primary, xenograft, and organoid models of pancreas cancer
Q52586092	Whole-body iron transport and metabolism: Mechanistic, multi-scale model to improve treatment of anemia in chronic kidney disease.
Q112645518	Whole-genome sequencing and gene sharing network analysis powered by machine learning identifies antibiotic resistance sharing between animals, humans and environment in livestock farming
Q42251429	Why SIT works: normal function despite typical myofiber pattern in Situs Inversus Totalis (SIT) hearts derived by shear-induced myofiber reorientation
Q28754720	Why are computational neuroscience and systems biology so separate?
Q113746479	Why are viral genomes so fragile? The bottleneck hypothesis
Q90190612	Why do G-quadruplexes dimerize through the 5'-ends? Driving forces for G4 DNA dimerization examined in atomic detail
Q92072516	Why do eukaryotic proteins contain more intrinsically disordered regions?
Q21092571	Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality
Q31032227	Why don't CD8+ T cells reduce the lifespan of SIV-infected cells in vivo?
Q33549713	Why genes evolve faster on secondary chromosomes in bacteria
Q21145381	Why is real-world visual object recognition hard?
Q28484071	Why open drug discovery needs four simple rules for licensing data and models
Q112615883	Wide range of metabolic adaptations to the acquisition of the Calvin cycle revealed by comparison of microbial genomes
Q28749083	Wide-field motion integration in fly VS cells: insights from an inverse approach
Q33784572	Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast
Q33708024	Widespread position-specific conservation of synonymous rare codons within coding sequences.
Q113309609	Wiggle - Predicting Functionally Flexible Regions from Primary Sequence
Q33250077	Wiggle-predicting functionally flexible regions from primary sequence
Q21558514	Wikipedia usage estimates prevalence of influenza-like illness in the United States in near real-time
Q21092584	Will a biological database be different from a biological journal?
Q33535960	Will widgets and semantic tagging change computational biology?
Q113309280	Wing structure and neural encoding jointly determine sensing strategies in insect flight
Q97092992	Winter is coming: Pathogen emergence in seasonal environments
Q64922424	Wisdom of crowds in computational biology.
Q91650377	With an eye on uncertainty: Modelling pupillary responses to environmental volatility
Q33539737	Within- and cross-modal distance information disambiguate visual size-change perception.
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Q45762349	“Simple Rules for Editors”? Here Is One Rule to Tackle Neglected Problems of Publishing: Response from PLoS.

academic journal	Q737498
open-access journal	Q773668
scientific journal	Q5633421
society journal	Q73364223
APC-funded journal	Q73365221

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		http://bibpurl.oclc.org/web/9594
		http://journals.plos.org/ploscompbiol/
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		http://www.ploscompbiol.org
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P1156	Scopus source ID	4000151810
P1025	SUDOC editions	096125063
P4616	UniProt journal ID	1594

P166	award received	DOAJ seal	Q73548471
P972	catalog	Directory of Open Access Journals	Q1227538
P275	copyright license	Creative Commons Attribution	Q6905323
P6216	copyright status	copyrighted	Q50423863
P17	country	United States of America	Q30
P495	country of origin	United States of America	Q30
P1240	Danish Bibliometric Research Indicator level	1
P98	editor	Philip Bourne	Q7183255
		Ruth Nussinov	Q7383152
P101	field of work	biology	Q420
P571	inception	2005-01-01
P8875	indexed in bibliographic review	Scopus	Q371467
		Science Citation Index Expanded	Q104047209
P407	language of work or name	English	Q1860
P921	main subject	biology	Q420
		computational biology	Q177005
P127	owned by	International Society for Computational Biology	Q4288281
P2284	price	2350
P1056	product or material produced or service provided	works copyrighted by authors	Q73362150
P123	publisher	Public Library of Science	Q233358
		International Society for Computational Biology	Q4288281
P9683	Qualis rank	A1	Q107264142
P1813	short name	PLoS Comput Biol
P1476	title	PLOS Computational Biology

Q4288281	International Society for Computational Biology	house publication	P2813
Q95977810	Journal first Wikipedia-integrated dual publishing	organizer	P664

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