| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/ploscb/UygunPLLS16 |
| P356 | DOI | 10.1371/JOURNAL.PCBI.1005244 |
| P932 | PMC publication ID | 5147789 |
| P698 | PubMed publication ID | 27935950 |
| P50 | author | Sahra Uygun | Q59677995 |
| Melissa Lehti-Shiu | Q63644693 | ||
| Robert L. Last | Q28124401 | ||
| Shin-Han Shiu | Q41045418 | ||
| P2093 | author name string | Cheng Peng | |
| P2860 | cites work | WGCNA: an R package for weighted correlation network analysis | Q21284194 |
| Cluster analysis and display of genome-wide expression patterns | Q24644463 | ||
| Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization | Q24657378 | ||
| AraCyc: a biochemical pathway database for Arabidopsis | Q24675279 | ||
| Statistical significance for genomewide studies | Q24681264 | ||
| Similarities and differences in genome-wide expression data of six organisms | Q24800747 | ||
| Disentangling the many layers of eukaryotic transcriptional regulation | Q26865492 | ||
| Transcriptional coordination of the metabolic network in Arabidopsis | Q51934868 | ||
| A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics | Q51942760 | ||
| Sequential Competitive Learning and the Fuzzy c-Means Clustering Algorithms | Q52200642 | ||
| Arabidopsis Cuticular Wax Biosynthesis Is Negatively Regulated by the DEWAX Gene Encoding an AP2/ERF-Type Transcription Factor | Q52649041 | ||
| Silhouettes: A graphical aid to the interpretation and validation of cluster analysis | Q57380611 | ||
| Linear models and empirical bayes methods for assessing differential expression in microarray experiments | Q27860758 | ||
| Identifying regulatory networks by combinatorial analysis of promoter elements | Q28215713 | ||
| NASCArrays: a repository for microarray data generated by NASC's transcriptomics service | Q28776478 | ||
| The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools | Q29615486 | ||
| Gene Ontology Consortium: going forward | Q29616846 | ||
| A gene expression map of Arabidopsis thaliana development | Q29617330 | ||
| A general framework for weighted gene co-expression network analysis | Q29617580 | ||
| The current excitement in bioinformatics-analysis of whole-genome expression data: how does it relate to protein structure and function? | Q30327381 | ||
| Relating whole-genome expression data with protein-protein interactions | Q30669147 | ||
| A stability based method for discovering structure in clustered data. | Q30684305 | ||
| SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome | Q30844372 | ||
| Coexpression analysis of human genes across many microarray data sets | Q30936126 | ||
| Gene coexpression network analysis as a source of functional annotation for rice genes | Q31027057 | ||
| The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. | Q31106427 | ||
| A comparative study of different machine learning methods on microarray gene expression data | Q31150616 | ||
| The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access | Q31152945 | ||
| Estimating the annotation error rate of curated GO database sequence annotations | Q33285442 | ||
| Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases | Q33350083 | ||
| Articulation of three core metabolic processes in Arabidopsis: fatty acid biosynthesis, leucine catabolism and starch metabolism | Q33350705 | ||
| Global networks of functional coupling in eukaryotes from comprehensive data integration | Q33412986 | ||
| Arabidopsis gene co-expression network and its functional modules. | Q33511670 | ||
| On the choice and number of microarrays for transcriptional regulatory network inference | Q33687848 | ||
| Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana | Q33801141 | ||
| MIPHENO: data normalization for high throughput metabolite analysis | Q34127455 | ||
| Biosynthesis and secretion of plant cuticular wax. | Q35017711 | ||
| Genome-wide tissue-specific gene expression, co-expression and regulation of co-expressed genes in adult nematode Ascaris suum | Q35091848 | ||
| Annotation of gene function in citrus using gene expression information and co-expression networks | Q35206810 | ||
| Determination and inference of eukaryotic transcription factor sequence specificity | Q35249717 | ||
| AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species | Q35253375 | ||
| Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis | Q35745183 | ||
| Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast | Q35751160 | ||
| How does gene expression clustering work? | Q36333333 | ||
| Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis | Q36749710 | ||
| Mining iron: iron uptake and transport in plants | Q36813546 | ||
| Auxin metabolism and homeostasis during plant development | Q38081073 | ||
| Towards revealing the functions of all genes in plants | Q38162601 | ||
| Co‐expression Analysis Identifies CRC and AP1 the Regulator of Arabidopsis Fatty Acid Biosynthesis | Q38496694 | ||
| PlaNet: combined sequence and expression comparisons across plant networks derived from seven species | Q38502841 | ||
| Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks | Q38510491 | ||
| Systematic analysis of Arabidopsis organelles and a protein localization database for facilitating fluorescent tagging of full-length Arabidopsis proteins | Q38518593 | ||
| 50 years of Arabidopsis research: highlights and future directions | Q38606784 | ||
| The MYB96 Transcription Factor Regulates Cuticular Wax Biosynthesis under Drought Conditions inArabidopsis | Q39446444 | ||
| Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways | Q40496536 | ||
| The Impact of the Branched-Chain Ketoacid Dehydrogenase Complex on Amino Acid Homeostasis in Arabidopsis. | Q40927364 | ||
| GENIES: gene network inference engine based on supervised analysis | Q42233064 | ||
| Guidance for RNA-seq co-expression network construction and analysis: safety in numbers | Q42608562 | ||
| Biotic stress globally downregulates photosynthesis genes | Q42659578 | ||
| Broad connections in the Arabidopsis seed metabolic network revealed by metabolite profiling of an amino acid catabolism mutant | Q43237647 | ||
| Distinct isoprenoid origins of cis- and trans-zeatin biosyntheses in Arabidopsis | Q44730647 | ||
| Chloroplast 2010: a database for large-scale phenotypic screening of Arabidopsis mutants. | Q45988302 | ||
| Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid. | Q46817261 | ||
| Light-regulated, tissue-specific, and cell differentiation-specific expression of the Arabidopsis Fe(III)-chelate reductase gene AtFRO6. | Q46952896 | ||
| BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species | Q47745452 | ||
| TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs | Q48137256 | ||
| The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis | Q50131694 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P4510 | describes a project that uses | WGCNA | Q102537983 |
| limma | Q112236343 | ||
| P433 | issue | 12 | |
| P304 | page(s) | e1005244 | |
| P577 | publication date | 2016-12-09 | |
| P1433 | published in | PLOS Computational Biology | Q2635829 |
| P1476 | title | Utility and Limitations of Using Gene Expression Data to Identify Functional Associations | |
| P478 | volume | 12 |
| Q38837556 | A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants. |
| Q48124764 | A Regulatory Hierarchy of the Arabidopsis Branched-Chain Amino Acid Metabolic Network |
| Q57170840 | Functional Annotation of Caenorhabditis elegans Genes by Analysis of Gene Co-Expression Networks. |
| Q113585823 | Integrative omics approaches for biosynthetic pathway discovery in plants |
| Q90322808 | Ranking genome-wide correlation measurements improves microarray and RNA-seq based global and targeted co-expression networks |
| Q64232306 | Recent advances in gene function prediction using context-specific coexpression networks in plants |
| Q61811428 | Robust predictions of specialized metabolism genes through machine learning |
| Q92800116 | The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life |
| Q92859995 | Transcriptomic Analysis Identifies RNA Binding Proteins as Putative Regulators of Myelopoiesis and Leukemia |
| Q59340541 | funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data |
Search more.