| review article | Q7318358 |
| scholarly article | Q13442814 |
| P50 | author | Patrik D'haeseleer | Q56487498 |
| P2860 | cites work | Cluster analysis and display of genome-wide expression patterns | Q24644463 |
| Systematic determination of genetic network architecture | Q28138580 | ||
| Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation | Q29616072 | ||
| Computational cluster validation in post-genomic data analysis | Q30990574 | ||
| Comparisons and validation of statistical clustering techniques for microarray gene expression data | Q31133875 | ||
| Judging the quality of gene expression-based clustering methods using gene annotation | Q34153265 | ||
| Scoring clustering solutions by their biological relevance | Q47328191 | ||
| Cluster analysis for gene expression data: a survey | Q52927026 | ||
| P433 | issue | 12 | |
| P304 | page(s) | 1499-1501 | |
| P577 | publication date | 2005-12-01 | |
| P1433 | published in | Nature Biotechnology | Q1893837 |
| P1476 | title | How does gene expression clustering work? | |
| P478 | volume | 23 |
| Q35787754 | A Bayesian Alternative to Mutual Information for the Hierarchical Clustering of Dependent Random Variables |
| Q57727125 | A Discussion on the Biological Relevance of Clustering Results |
| Q58711062 | A Large-Scale Gene Expression Intensity-Based Similarity Metric for Drug Repositioning |
| Q91638932 | A Modular Cytokine Analysis Method Reveals Novel Associations With Clinical Phenotypes and Identifies Sets of Co-signaling Cytokines Across Influenza Natural Infection Cohorts and Healthy Controls |
| Q92782699 | A Protein Interaction Information-based Generative Model for Enhancing Gene Clustering |
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| Q37041909 | A decade of genome-wide gene expression profiling in acute myeloid leukemia: flashback and prospects |
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| Q30949437 | A multi-view genomic data simulator |
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| Q37400407 | A roadmap of clustering algorithms: finding a match for a biomedical application |
| Q33870658 | A systematic analysis of the skeletal muscle miRNA transcriptome of chicken varieties with divergent skeletal muscle growth identifies novel miRNAs and differentially expressed miRNAs |
| Q33527575 | A temporal precedence based clustering method for gene expression microarray data |
| Q36307080 | Advances in human B cell phenotypic profiling |
| Q38784148 | An Advanced Omic Approach to Identify Co-Regulated Clusters and Transcription Regulation Network with AGCT and SHOE Methods |
| Q31104507 | Analysis of time-series gene expression data: methods, challenges, and opportunities |
| Q41908569 | Antioxidant pathways are up-regulated during biological nitrogen fixation to prevent ROS-induced nitrogenase inhibition in Gluconacetobacter diazotrophicus |
| Q47382803 | Application of the Gini correlation coefficient to infer regulatory relationships in transcriptome analysis. |
| Q37837022 | Applying gene expression microarrays to pulmonary disease |
| Q42552788 | Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis |
| Q28390924 | Assessing Concordance of Drug-Induced Transcriptional Response in Rodent Liver and Cultured Hepatocytes |
| Q33536850 | AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number |
| Q36560781 | Autoantibody detection using multiplex technologies |
| Q36385562 | Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots |
| Q33767777 | Bayesian ensemble methods for survival prediction in gene expression data |
| Q30689368 | Bayesian hierarchical clustering for studying cancer gene expression data with unknown statistics |
| Q36312461 | Behavioral responses to orexin, orexin receptor gene expression, and spontaneous physical activity contribute to individual sensitivity to obesity |
| Q27310223 | Binary gene expression patterning of the molt cycle: the case of chitin metabolism |
| Q34301489 | Cancer core modules identification through genomic and transcriptomic changes correlation detection at network level |
| Q28596902 | Cardiovascular genomics: a biomarker identification pipeline |
| Q30979865 | Cautions about the reliability of pairwise gene correlations based on expression data |
| Q31132639 | ChIP-seq Data Processing for PcG Proteins and Associated Histone Modifications. |
| Q46046773 | Chapter 4. Analyzing the regulation of antibiotic production in streptomycetes |
| Q47110642 | Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply |
| Q42196276 | Cluster and Principal Component Analysis of Human Glioblastoma Multiforme (GBM) Tumor Proteome |
| Q28077284 | Clustering Algorithms: Their Application to Gene Expression Data |
| Q31165863 | Clustering cancer gene expression data by projective clustering ensemble |
| Q27496523 | Clustering cancer gene expression data: a comparative study |
| Q38640146 | Clustering of RNA-Seq samples: Comparison study on cancer data |
| Q28820713 | Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23 |
| Q90048115 | Co-Expression Network Analysis of Spleen Transcriptome in Rock Bream (Oplegnathus fasciatus) Naturally Infected with Rock Bream Iridovirus (RBIV) |
| Q38001459 | Comparative co-expression analysis in plant biology |
| Q39632696 | Comparing large covariance matrices under weak conditions on the dependence structure and its application to gene clustering |
| Q38961916 | Comparing the performance of biomedical clustering methods. |
| Q51253671 | Comparison of Cytotoxic Activity in Leukemic Lineages Reveals Important Features of β-Hairpin Antimicrobial Peptides. |
| Q36411905 | Computational dynamic approaches for temporal omics data with applications to systems medicine |
| Q36321061 | Concordance analysis of microarray studies identifies representative gene expression changes in Parkinson's disease: a comparison of 33 human and animal studies. |
| Q93116104 | Conserved transcriptomic profile between mouse and human colitis allows unsupervised patient stratification |
| Q37081858 | Cytokine-induced signaling networks prioritize dynamic range over signal strength |
| Q47143638 | DEclust: A statistical approach for obtaining differential expression profiles of multiple conditions. |
| Q31068825 | Data-driven modelling of signal-transduction networks |
| Q95272917 | DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models |
| Q35101933 | Discovery of metabolite biomarkers: flux analysis and reaction-reaction network approach |
| Q34105209 | Discovery of pituitary adenylate cyclase-activating polypeptide-regulated genes through microarray analyses in cell culture and in vivo. |
| Q34393799 | Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions |
| Q42447779 | Effect of insoluble fibre on intestinal morphology and mRNA expression pattern of inflammatory, cell cycle and growth marker genes in a piglet model. |
| Q42094242 | Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space |
| Q34371155 | Evaluating the consistency of gene sets used in the analysis of bacterial gene expression data |
| Q35723210 | Evolutionary Analysis of the B56 Gene Family of PP2A Regulatory Subunits |
| Q33332962 | Exploration of non-hierarchical classification methods combined with linkage analysis to identify loci influencing clusters of co-regulated transcripts |
| Q34413161 | Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis. |
| Q28833724 | Feliform carnivores have a distinguished constitutive innate immune response |
| Q34333419 | Framework for network modularization and Bayesian network analysis to investigate the perturbed metabolic network |
| Q47798147 | From Genes to Networks: Characterizing Gene-Regulatory Interactions in Plants |
| Q34219291 | From dusk till dawn: the Arabidopsis thaliana sugar starving responsive network |
| Q38771720 | Gene co-expression analysis for functional classification and gene-disease predictions |
| Q35920745 | Gene expression in large pedigrees: analytic approaches |
| Q33900853 | Gene expression rhythms in the mussel Mytilus galloprovincialis (Lam.) across an annual cycle. |
| Q33302052 | Gene expression trees in lymphoid development |
| Q38377825 | Gene regulatory network reconstruction using conditional mutual information |
| Q37229987 | Gene-expression analysis of clozapine treatment in whole blood of patients with psychosis |
| Q35066550 | Genome-wide functional genomic and transcriptomic analyses for genes regulating sensitivity to vorinostat |
| Q36035307 | Genomic Clustering of differential DNA methylated regions (epimutations) associated with the epigenetic transgenerational inheritance of disease and phenotypic variation |
| Q33916126 | Glioblastoma models reveal the connection between adult glial progenitors and the proneural phenotype |
| Q60300294 | Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers |
| Q33336432 | Global considerations in hierarchical clustering reveal meaningful patterns in data |
| Q38368040 | Heritable gene expression differences between lake and stream stickleback include both parallel and antiparallel components. |
| Q34206403 | High accordance in prognosis prediction of colorectal cancer across independent datasets by multi-gene module expression profiles |
| Q35362125 | Hybrid-controlled neurofuzzy networks analysis resulting in genetic regulatory networks reconstruction. |
| Q30482952 | Identification and clustering of event patterns from in vivo multiphoton optical recordings of neuronal ensembles |
| Q99350352 | Identification of effector candidate genes of Rhizoctonia solani AG-1 IA expressed during infection in Brachypodium distachyon |
| Q33266433 | Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms |
| Q34480825 | Identifying reference genes with stable expression from high throughput sequence data. |
| Q28530233 | Identifying the Unknowns by Aligning Fragmentation Trees |
| Q34076651 | Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence |
| Q88234938 | Improving estimation of kinetic parameters in dynamic force spectroscopy using cluster analysis |
| Q33279564 | Including probe-level uncertainty in model-based gene expression clustering |
| Q33444314 | Incorporating functional inter-relationships into protein function prediction algorithms |
| Q38675595 | Independent Component Analysis (ICA) based-clustering of temporal RNA-seq data |
| Q30484002 | InnateDB: facilitating systems-level analyses of the mammalian innate immune response. |
| Q31130884 | Integration of known transcription factor binding site information and gene expression data to advance from co-expression to co-regulation |
| Q30811533 | Interactive knowledge discovery and data mining on genomic expression data with numeric formal concept analysis. |
| Q37931436 | Intestinal gene expression in pigs: effects of reduced feed intake during weaning and potential impact of dietary components |
| Q89497053 | Joint Detection of Associations between DNA Methylation and Gene Expression from Multiple Cancers |
| Q64901038 | Lifestyle patterns in the Iranian population: Self- organizing map application. |
| Q51160440 | Linear and Cyclic Depsipeptidomimetics with β-Lactam Cores: A Class of New αv β3 Integrin Receptor Inhibitors. |
| Q34321043 | Listen to genes: dealing with microarray data in the frequency domain |
| Q35778412 | Long Term Development of Gut Microbiota Composition in Atopic Children: Impact of Probiotics |
| Q89737890 | Low-cost scalable discretization, prediction, and feature selection for complex systems |
| Q30604442 | MS-kNN: protein function prediction by integrating multiple data sources |
| Q33736355 | Mapping transcription mechanisms from multimodal genomic data |
| Q33420091 | MarVis: a tool for clustering and visualization of metabolic biomarkers |
| Q29014502 | Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research |
| Q37282437 | Maximum-entropy network analysis reveals a role for tumor necrosis factor in peripheral nerve development and function |
| Q36291335 | MicroRNAs and Their Targets Are Differentially Regulated in Adult and Neonatal Mouse CD8+ T Cells |
| Q31146291 | Microarray data mining using landmark gene-guided clustering |
| Q39476786 | Microarray expression profiling in 6-hydroxydopamine-induced dopaminergic neuronal cell death |
| Q31153102 | Missing value imputation improves clustering and interpretation of gene expression microarray data |
| Q42062971 | Modeling autism: a systems biology approach |
| Q40134113 | Modelling-based experiment retrieval: a case study with gene expression clustering |
| Q59114687 | Monitoring of Spectral Map Changes from Normal State to Superconducting State in High-TCSuperconductor Films Using Raman Imaging |
| Q57164195 | Monitoring of chemotherapy leukemia treatment using Raman spectroscopy and principal component analysis |
| Q41963070 | Multiparameter flow cytometry and bioanalytics for B cell profiling in systemic lupus erythematosus |
| Q35540014 | Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables |
| Q33533378 | Network inference and network response identification: moving genome-scale data to the next level of biological discovery |
| Q38825722 | Network-aided Bi-Clustering for discovering cancer subtypes |
| Q90448664 | Network-based identification of signature genes KLF6 and SPOCK1 associated with oral submucous fibrosis |
| Q21284299 | On the selection of appropriate distances for gene expression data clustering |
| Q34114751 | Partition decoupling for multi-gene analysis of gene expression profiling data |
| Q31074463 | Polychromatic flow cytometry: a rapid method for the reduction and analysis of complex multiparameter data |
| Q33308257 | Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes |
| Q33730012 | Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening |
| Q36696387 | Public databases and software for the pathway analysis of cancer genomes. |
| Q38656303 | Quantifying Gene Regulatory Relationships with Association Measures: A Comparative Study |
| Q33860646 | R. S. WebTool, a web server for random sampling-based significance evaluation of pairwise distances |
| Q64091356 | RNA-sequencing in ophthalmology research: considerations for experimental design and analysis |
| Q36783652 | Reconstructing regulatory networks from the dynamic plasticity of gene expression by mutual information |
| Q30495653 | Recursive expectation-maximization clustering: a method for identifying buffering mechanisms composed of phenomic modules |
| Q83388897 | Regulation of genes involved in nitrogen utilization on different C/N ratios and nitrogen sources in the model ectomycorrhizal fungus Hebeloma cylindrosporum |
| Q30491922 | Reliable coding emerges from coactivation of climbing fibers in microbands of cerebellar Purkinje neurons |
| Q38086862 | Retinal amino acid neurochemistry in health and disease |
| Q38352242 | RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice |
| Q45965220 | Robust machine learning algorithms predict microRNA genes and targets. |
| Q37440666 | Role of the locus coeruleus in enhanced orexin A-induced spontaneous physical activity in obesity-resistant rats |
| Q59707809 | Rotation Clustering: A Consensus Clustering Approach to Cluster Gene Expression Data |
| Q38558121 | Screening the Molecular Framework Underlying Local Dendritic mRNA Translation. |
| Q58694748 | Short term optical defocus perturbs normal developmental shifts in retina/RPE protein abundance |
| Q59813441 | Single Cell Gene Expression to Understand the Dynamic Architecture of the Heart |
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| Q35209076 | Spectral preprocessing for clustering time-series gene expressions |
| Q30498126 | Speeding up the Consensus Clustering methodology for microarray data analysis |
| Q30573135 | Statistical properties of multivariate distance matrix regression for high-dimensional data analysis |
| Q26864172 | Strategic applications of gene expression: from drug discovery/development to bedside |
| Q37109769 | Systematic characterization of lncRNAs' cell-to-cell expression heterogeneity in glioblastoma cells |
| Q27023883 | Systems analysis of high-throughput data |
| Q38051560 | Systems biology approaches to finding novel pain mediators |
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| Q92800116 | The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life |
| Q89687104 | The Translational Potential of Neuroimaging Genomic Analyses To Diagnosis And Treatment In The Mental Disorders |
| Q36391199 | The Utility of Gene Expression Profiling from Tissue Samples to Support Drug Safety Assessments |
| Q46328514 | The periodontal war: microbes and immunity. |
| Q93146157 | The right response at the right time: Exploring helminth immune modulation in sticklebacks by experimental coinfection |
| Q40626916 | The transcriptomics of an experimentally evolved plant-virus interaction. |
| Q36672069 | Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Multi-organ whole-genome measurements and reverse engineering to uncover gene networks underlying complex traits |
| Q38621281 | Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation |
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| Q27313659 | Transcriptional response of the mussel Mytilus galloprovincialis (Lam.) following exposure to heat stress and copper |
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| Q33395340 | TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database |
| Q97522478 | Transcriptomic analysis by RNA sequencing characterises malignant progression of canine insulinoma from normal tissue to metastatic disease |
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