| scholarly article | Q13442814 |
| P2093 | author name string | Anirvan M Sengupta | |
| Swagatam Mukhopadhyay | |||
| P2860 | cites work | Spatial epigenetic control of mono- and bistable gene expression | Q21090179 |
| The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4 | Q24536072 | ||
| Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications | Q24545952 | ||
| Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association | Q24675122 | ||
| Silent information regulator 2 family of NAD- dependent histone/protein deacetylases generates a unique product, 1-O-acetyl-ADP-ribose | Q24675630 | ||
| Structure of the coiled-coil dimerization motif of Sir4 and its interaction with Sir3 | Q27641394 | ||
| Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase | Q27860668 | ||
| Chromatin modifications and their function | Q27861067 | ||
| The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation | Q27930884 | ||
| The Paf1 complex is required for efficient transcription elongation by RNA polymerase I | Q27931337 | ||
| Interplay of chromatin modifiers on a short basic patch of histone H4 tail defines the boundary of telomeric heterochromatin | Q27932245 | ||
| Silent information regulator protein complexes in Saccharomyces cerevisiae: a SIR2/SIR4 complex and evidence for a regulatory domain in SIR4 that inhibits its interaction with SIR3. | Q27933756 | ||
| Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association | Q27933908 | ||
| Domain structure and protein interactions of the silent information regulator Sir3 revealed by screening a nested deletion library of protein fragments | Q27935281 | ||
| SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast | Q27936734 | ||
| Reconstitution of yeast silent chromatin: multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro | Q27937816 | ||
| The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p | Q27940017 | ||
| Identification of high-copy disruptors of telomeric silencing in Saccharomyces cerevisiae | Q27940105 | ||
| The yeast SAS (something about silencing) protein complex contains a MYST-type putative acetyltransferase and functions with chromatin assembly factor ASF1 | Q27940230 | ||
| Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription | Q28131683 | ||
| The complex language of chromatin regulation during transcription | Q28131748 | ||
| Shape, size, and robustness: feasible regions in the parameter space of biochemical networks | Q28474347 | ||
| Redundant roles for histone H3 N-terminal lysine residues in subtelomeric gene repression in Saccharomyces cerevisiae | Q28768691 | ||
| Histone variants: deviants? | Q29391535 | ||
| Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae. | Q29465402 | ||
| Active genes are tri-methylated at K4 of histone H3 | Q29547668 | ||
| The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae | Q29614854 | ||
| Dot1p modulates silencing in yeast by methylation of the nucleosome core | Q29614855 | ||
| Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast | Q29614857 | ||
| Histone ubiquitination: triggering gene activity | Q29617523 | ||
| Breaking through to the other side: silencers and barriers | Q30827036 | ||
| Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1. | Q33220208 | ||
| POF and HP1 bind expressed exons, suggesting a balancing mechanism for gene regulation | Q33306115 | ||
| Heterochromatin formation involves changes in histone modifications over multiple cell generations | Q33854167 | ||
| Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae. | Q33893339 | ||
| Identification of a non-basic domain in the histone H4 N-terminus required for repression of the yeast silent mating loci | Q33937860 | ||
| Histone acetylation and deacetylation in yeast | Q34187792 | ||
| A Polycomb-based switch underlying quantitative epigenetic memory | Q34203201 | ||
| Cell cycle requirements in assembling silent chromatin in Saccharomyces cerevisiae. | Q34302415 | ||
| Histone variants meet their match | Q34390385 | ||
| The molecular biology of the SIR proteins | Q34448539 | ||
| Symmetry, asymmetry, and kinetics of silencing establishment in Saccharomyces cerevisiae revealed by single-cell optical assays | Q34533909 | ||
| Breaking barriers to transcription elongation | Q34561019 | ||
| Spreading of silent chromatin: inaction at a distance | Q34567039 | ||
| Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin | Q44179355 | ||
| Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing | Q44200809 | ||
| Insights into the impact of histone acetylation and methylation on Sir protein recruitment, spreading, and silencing in Saccharomyces cerevisiae | Q45839171 | ||
| DNA replication-independent silencing in S. cerevisiae. | Q46025439 | ||
| Simplifying a complex code | Q46559925 | ||
| Nonprocessive methylation by Dot1 leads to functional redundancy of histone H3K79 methylation states | Q46567995 | ||
| Theory for the stability and regulation of epigenetic landscapes. | Q53320217 | ||
| Dynamics of Replication-Independent Histone Turnover in Budding Yeast | Q57233862 | ||
| Evidence for silencing compartments within the yeast nucleus: a role for telomere proximity and Sir protein concentration in silencer-mediated repression | Q61783589 | ||
| Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage | Q72802227 | ||
| Role of the conserved Sir3-BAH domain in nucleosome binding and silent chromatin assembly | Q80407843 | ||
| Heterochromatin spreading at yeast telomeres occurs in M phase | Q34567071 | ||
| Domains of gene silencing near the left end of chromosome III in Saccharomyces cerevisiae | Q34614877 | ||
| A unique class of conditional sir2 mutants displays distinct silencing defects in Saccharomyces cerevisiae. | Q34616104 | ||
| Theoretical analysis of epigenetic cell memory by nucleosome modification. | Q34629739 | ||
| Epigenetic chromatin silencing: bistability and front propagation | Q34712052 | ||
| Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation | Q34762156 | ||
| Dot1 and histone H3K79 methylation in natural telomeric and HM silencing | Q34894936 | ||
| Epigenetic inheritance during the cell cycle | Q34950028 | ||
| Spreading of Sir3 protein in cells with severe histone H3 hypoacetylation | Q35146066 | ||
| Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci | Q35188576 | ||
| A model for step-wise assembly of heterochromatin in yeast. | Q35788642 | ||
| Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z. | Q36082186 | ||
| Sir2 deacetylates histone H3 lysine 56 to regulate telomeric heterochromatin structure in yeast. | Q36102455 | ||
| Mechanism for epigenetic variegation of gene expression at yeast telomeric heterochromatin | Q36374195 | ||
| Genome-wide patterns of histone modifications in yeast. | Q36567360 | ||
| Simple histone acetylation plays a complex role in the regulation of gene expression | Q36596204 | ||
| Cross-regulation of histone modifications | Q36994157 | ||
| Genetic and genomewide analysis of simultaneous mutations in acetylated and methylated lysine residues in histone H3 in Saccharomyces cerevisiae | Q37102604 | ||
| Polycomb complexes and epigenetic states | Q37148660 | ||
| The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion | Q37150874 | ||
| Structure of the conserved core of the yeast Dot1p, a nucleosomal histone H3 lysine 79 methyltransferase | Q37208358 | ||
| The establishment of gene silencing at single-cell resolution | Q37337415 | ||
| Silent information regulator 3: the Goldilocks of the silencing complex | Q37676731 | ||
| Chromatin as a potential carrier of heritable information | Q37714146 | ||
| Synthetic lethal screens identify gene silencing processes in yeast and implicate the acetylated amino terminus of Sir3 in recognition of the nucleosome core | Q39027163 | ||
| Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation | Q39674793 | ||
| Cell-cycle control of the establishment of mating-type silencing in S. cerevisiae | Q39864429 | ||
| The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote | Q40903819 | ||
| A common telomeric gene silencing assay is affected by nucleotide metabolism | Q41770563 | ||
| Chronux: a platform for analyzing neural signals | Q41811731 | ||
| Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization | Q41872924 | ||
| Inheritance of epigenetic chromatin silencing | Q41981789 | ||
| Locus dependence in epigenetic chromatin silencing | Q42068901 | ||
| A nonhistone protein-protein interaction required for assembly of the SIR complex and silent chromatin | Q42105834 | ||
| Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms. | Q42602158 | ||
| Limitations of silencing at native yeast telomeres | Q42673247 | ||
| Mutational analysis of the Sir3 BAH domain reveals multiple points of interaction with nucleosomes. | Q43127474 | ||
| Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin | Q43430561 | ||
| Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3. | Q43803659 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 7 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | e1003121 | |
| P577 | publication date | 2013-01-01 | |
| P1433 | published in | PLOS Computational Biology | Q2635829 |
| P1476 | title | The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state | |
| P478 | volume | 9 |
| Q35533119 | Breaking an epigenetic chromatin switch: curious features of hysteresis in Saccharomyces cerevisiae telomeric silencing |
| Q36213177 | Cooperative stabilization of the SIR complex provides robust epigenetic memory in a model of SIR silencing in Saccharomyces cerevisiae. |
| Q64076011 | How can memories last for days, years, or a lifetime? Proposed mechanisms for maintaining synaptic potentiation and memory |
| Q41882363 | Mechanistic stochastic model of histone modification pattern formation |
| Q64057207 | Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent |
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