Automated evaluation of quaternary structures from protein crystals.

scientific article

Automated evaluation of quaternary structures from protein crystals. is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/ploscb/BlivenLPCD18
P356DOI10.1371/JOURNAL.PCBI.1006104
P8608Fatcat IDrelease_ujak2j6c2vghji3jpnqmk3fbgy
P932PMC publication ID5945228
P698PubMed publication ID29708963

P50authorAleix LafitaQ53104377
Spencer E. BlivenQ28946155
Jose M. DuarteQ30503180
P2093author name stringGuido Capitani
Althea Parker
P2860cites workThe Protein Data BankQ24515306
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BioJava: an open-source framework for bioinformatics in 2012Q24630147
Intervening with urinary tract infections using anti-adhesives based on the crystal structure of the FimH-oligomannose-3 complexQ24645503
Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contactsQ26778330
Structure and Histone Binding Properties of the Vps75-Rtt109 Chaperone-Lysine Acetyltransferase ComplexQ27667396
Structure of AMP-PNP-bound vitamin B12 transporter BtuCD-FQ27682423
Crystal structure and mutational analysis of the Escherichia coli putrescine receptor. Structural basis for substrate specificityQ27759800
Inference of macromolecular assemblies from crystalline stateQ27860457
ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODELQ27861036
Systematic detection of internal symmetry in proteins using CE-SymmQ28645866
The RCSB Protein Data Bank: views of structural biology for basic and applied research and educationQ28650443
Structural and mechanistic insight into the Listeria monocytogenes two-enzyme lipoteichoic acid synthesis system.Q30365756
PiQSi: protein quaternary structure investigation.Q30365772
3D complex: a structural classification of protein complexesQ33263952
Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.Q33668749
Structural symmetry and protein functionQ34001342
NGL Viewer: a web application for molecular visualizationQ34474309
Protein interface classification by evolutionary analysisQ34520325
A PDB-wide, evolution-based assessment of protein-protein interfaces.Q34762050
Inferring interaction partners from protein sequencesQ37379905
Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and functionQ38321925
Effective discrimination between biologically relevant contacts and crystal packing contacts using new determinantsQ43410518
Crystal structure of Mycobacterium tuberculosis D-3-phosphoglycerate dehydrogenase: extreme asymmetry in a tetramer of identical subunitsQ45236652
PDB-wide identification of biological assemblies from conserved quaternary structure geometryQ47385105
Principles of assembly reveal a periodic table of protein complexesQ47569108
Structural and evolutionary versatility in protein complexes with uneven stoichiometryQ47570652
Proteins evolve on the edge of supramolecular self-assemblyQ47982938
Combining Bayes classification and point group symmetry under Boolean framework for enhanced protein quaternary structure inference.Q51593249
P275copyright licenseCreative Commons CC0 LicenseQ6938433
P6216copyright statuscopyrighted, dedicated to the public domain by copyright holderQ88088423
P433issue4
P921main subjectautomationQ184199
protein structureQ735188
P304page(s)e1006104
P577publication date2018-04-30
P1433published inPLOS Computational BiologyQ2635829
P1476titleAutomated evaluation of quaternary structures from protein crystals.
P478volume14

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cites work (P2860)
Q63403759Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm
Q64116706BioJava 5: A community driven open-source bioinformatics library
Q90709301Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment
Q90249376Crystal Structure of α-Xylosidase from Aspergillus niger in Complex with a Hydrolyzed Xyloglucan Product and New Insights in Accurately Predicting Substrate Specificities of GH31 Family Glycosidases
Q89555614ProtCID: a data resource for structural information on protein interactions
Q57793773RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
Q64101232Structure and mechanism of TagA, a novel membrane-associated glycosyltransferase that produces wall teichoic acids in pathogenic bacteria
Q92816927Target highlights in CASP13: Experimental target structures through the eyes of their authors
Q59329027USP18 - a multifunctional component in the interferon response

Q114841783Evolutionary Protein Protein Interface Classifierdescribed by sourceP1343

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