| scholarly article | Q13442814 |
| P50 | author | Philip Bourne | Q7183255 |
| Jianjiong Gao | Q43370984 | ||
| Andrew D Yates | Q51915599 | ||
| Richard Holland | Q54303018 | ||
| Jules Jacobsen | Q56604100 | ||
| Andreas Prlić | Q28946154 | ||
| Spencer E. Bliven | Q28946155 | ||
| Peter W. Rose | Q30361666 | ||
| P2093 | author name string | Michael L Heuer | |
| Chuan Hock Koh | |||
| Mark Chapman | |||
| Sylvain Foisy | |||
| Peter V Troshin | |||
| Scooter Willis | |||
| Gediminas Rimsa | |||
| H Brandstätter-Müller | |||
| P2860 | cites work | Circular permutation in proteins | Q5121672 |
| RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins | Q34425242 | ||
| Computational gene annotation in new genome assemblies using GeneID. | Q34976662 | ||
| Jmol– a paradigm shift in crystallographic visualization | Q43388727 | ||
| The PSI-MOD community standard for representation of protein modification data. | Q55050379 | ||
| Alignments of DNA and protein sequences containing frameshift errors | Q56337670 | ||
| Pre-calculated protein structure alignments at the RCSB PDB website | Q21045412 | ||
| The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications | Q21284282 | ||
| The Protein Data Bank | Q24515306 | ||
| GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses | Q24530553 | ||
| E-MSD: an integrated data resource for bioinformatics | Q24558586 | ||
| HMMER web server: interactive sequence similarity searching | Q24603071 | ||
| The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants | Q24609857 | ||
| The RCSB Protein Data Bank: redesigned web site and web services | Q24616175 | ||
| Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering | Q24618283 | ||
| BioRuby: bioinformatics software for the Ruby programming language | Q24634384 | ||
| Biopython: freely available Python tools for computational molecular biology and bioinformatics | Q24643426 | ||
| BioJava: an open-source framework for bioinformatics | Q24654080 | ||
| The Bioperl toolkit: Perl modules for the life sciences | Q24682183 | ||
| The generic genome browser: a building block for a model organism system database | Q24682395 | ||
| PatMatch: a program for finding patterns in peptide and nucleotide sequences | Q24812155 | ||
| Azotobacter vinelandii ferredoxin I: a sequence and structure comparison approach to alteration of [4Fe-4S]2+/+ reduction potential | Q27636135 | ||
| EMBOSS: the European Molecular Biology Open Software Suite | Q27860491 | ||
| A general method applicable to the search for similarities in the amino acid sequence of two proteins | Q27860563 | ||
| Identification of common molecular subsequences | Q27860816 | ||
| The Protein Data Bank: a computer-based archival file for macromolecular structures | Q27860989 | ||
| Protein structure alignment by incremental combinatorial extension (CE) of the optimal path | Q27861005 | ||
| Flexible structure alignment by chaining aligned fragment pairs allowing twists | Q29615879 | ||
| The RESID Database of Protein Modifications as a resource and annotation tool | Q34324179 | ||
| Annotation of post-translational modifications in the Swiss-Prot knowledge base | Q34324183 | ||
| Alignments of DNA and protein sequences containing frameshift errors | Q34385593 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial 3.0 Unported | Q18810331 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 20 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | bioinformatics | Q128570 |
| BioJava | Q1036510 | ||
| open-source software | Q1130645 | ||
| P304 | page(s) | 2693-5 | |
| P577 | publication date | 2012-10-15 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | BioJava: an open-source framework for bioinformatics in 2012 | |
| P478 | volume | 28 |
| Q37602707 | 3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets |
| Q58091185 | A large-scale analysis of bioinformatics code on GitHub |
| Q27902350 | A molecular fragment cheminformatics roadmap for mesoscopic simulation |
| Q42022336 | A series of PDB-related databanks for everyday needs. |
| Q41011082 | ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments. |
| Q48510287 | AbDesigner3D: a structure-guided tool for peptide-based antibody production. |
| Q93023330 | Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals |
| Q36236754 | AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs |
| Q40494065 | An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products |
| Q63403759 | Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm |
| Q60920298 | Application of an interpretable classification model on Early Folding Residues during protein folding |
| Q21092920 | Applications of the InChI in cheminformatics with the CDK and Bioclipse |
| Q46521126 | Assessment of protein assembly prediction in CASP12. |
| Q54941715 | Automated evaluation of quaternary structures from protein crystals. |
| Q30592960 | BioJS: an open source JavaScript framework for biological data visualization |
| Q23762730 | BioJS: an open source standard for biological visualisation - its status in 2014 |
| Q64116706 | BioJava 5: A community driven open-source bioinformatics library |
| Q33459139 | BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank. |
| Q34103085 | Bioclojure: a functional library for the manipulation of biological sequences. |
| Q42461108 | CRISP-ID: decoding CRISPR mediated indels by Sanger sequencing. |
| Q34459744 | Characteristics of protein residue-residue contacts and their application in contact prediction |
| Q58098472 | Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases |
| Q30363618 | Cloud4Psi: cloud computing for 3D protein structure similarity searching. |
| Q38973893 | CloudPhylo: a fast and scalable tool for phylogeny reconstruction |
| Q28650373 | Community-driven development for computational biology at Sprints, Hackathons and Codefests |
| Q21045418 | Detection of circular permutations within protein structures using CE-CP |
| Q36142306 | Draft Genome Sequence of Marine Sponge Symbiont Pseudoalteromonas luteoviolacea IPB1, Isolated from Hilo, Hawaii |
| Q34491947 | Elevated APOBEC3B correlates with poor outcomes for estrogen-receptor-positive breast cancers |
| Q37001937 | FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation |
| Q47313672 | Forecasting residue-residue contact prediction accuracy |
| Q58713072 | GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components |
| Q35951692 | Genome and network visualization facilitates the analyses of the effects of drugs and mutations on protein-protein and drug-protein networks |
| Q37609298 | Genome-wide divergence, haplotype distribution and population demographic histories for Gossypium hirsutum and Gossypium barbadense as revealed by genome-anchored SNPs |
| Q36676569 | Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM) |
| Q28820976 | Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining |
| Q47135566 | H2AX facilitates classical non-homologous end joining at the expense of limited nucleotide loss at repair junctions |
| Q30388053 | HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering |
| Q30491136 | Impact of genetic variation on three dimensional structure and function of proteins |
| Q27902352 | Improving protein-ligand binding site prediction accuracy by classification of inner pocket points using local features |
| Q31123068 | Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank |
| Q58468573 | Introducing distributed dynamic data-intensive (D3) science: Understanding applications and infrastructure |
| Q55322114 | Investigation of protein quaternary structure via stoichiometry and symmetry ınformation. |
| Q28679153 | JBioWH: an open-source Java framework for bioinformatics data integration |
| Q92085616 | JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface |
| Q30316452 | JSBML 1.0: providing a smorgasbord of options to encode systems biology models |
| Q45946813 | LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis. |
| Q33807098 | MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures |
| Q47313322 | Model-based genome-wide determination of RNA chain elongation rates in Escherichia coli |
| Q30586906 | Native structure-based modeling and simulation of biomolecular systems per mouse click |
| Q35885933 | Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution |
| Q28660368 | Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective |
| Q39368360 | PDB2CD: a web-based application for the generation of circular dichroism spectra from protein atomic coordinates |
| Q40231131 | PRISM 3: expanded prediction of natural product chemical structures from microbial genomes |
| Q116965302 | PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity |
| Q111078487 | PSnpBind: a database of mutated binding site protein–ligand complexes constructed using a multithreaded virtual screening workflow |
| Q36135176 | Pathogen metadata platform: software for accessing and analyzing pathogen strain information |
| Q30389147 | ProSAT+: visualizing sequence annotations on 3D structure |
| Q55518807 | RNApdbee 2.0: multifunctional tool for RNA structure annotation. |
| Q89368460 | SDADB: a functional annotation database of protein structural domains |
| Q35253332 | SNP-Seek database of SNPs derived from 3000 rice genomes |
| Q26783744 | Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimens |
| Q61451098 | Scalable Extraction of Big Macromolecular Data in Azure Data Lake Environment |
| Q34510288 | Secondary structure, a missing component of sequence-based minimotif definitions |
| Q92786413 | Shared data science infrastructure for genomics data |
| Q34514528 | Single Gene Prognostic Biomarkers in Ovarian Cancer: A Meta-Analysis |
| Q61875345 | Standards-based metadata management for molecular simulations |
| Q30677995 | StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies |
| Q30393063 | Structural alignment of protein descriptors - a combinatorial model |
| Q91768536 | StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map |
| Q30378558 | TAPO: A combined method for the identification of tandem repeats in protein structures. |
| Q35108984 | TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline |
| Q35070092 | TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors |
| Q47361532 | Template-based quaternary structure prediction of proteins using enhanced profile-profile alignments. |
| Q24494742 | Ten simple rules for the open development of scientific software |
| Q27304427 | The MI bundle: enabling network and structural biology in genome visualization tools. |
| Q28650443 | The RCSB Protein Data Bank: views of structural biology for basic and applied research and education |
| Q31139806 | The RCSB protein data bank: integrative view of protein, gene and 3D structural information |
| Q35004812 | The RosettaCon 2012 Special Collection: Code Writ on Water, Documentation Writ in Stone |
| Q30359404 | The impact of structural diversity and parameterization on maps of the protein universe |
| Q38475785 | The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression. |
| Q98158609 | The structural basis of the genetic code: amino acid recognition by aminoacyl-tRNA synthetases |
| Q60916078 | TogoGenome/TogoStanza: modularized Semantic Web genome database |
| Q26759572 | Tools and data services registry: a community effort to document bioinformatics resources |
| Q92403773 | Towards an Internet of Science |
| Q27902341 | bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming |
Search more.