A series of PDB-related databanks for everyday needs.

scientific article published on 28 October 2014

A series of PDB-related databanks for everyday needs. is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/nar/TouwBBBKJV15
P356DOI10.1093/NAR/GKU1028
P932PMC publication ID4383885
P698PubMed publication ID25352545
P5875ResearchGate publication ID267741783

P50authorRobbie P. JoostenQ43371029
P2093author name stringGert Vriend
Wouter G Touw
Tim A H te Beek
Coos Baakman
Jon Black
E Krieger
P2860cites workPDBsum additionsQ24567739
Evolutionary origin of a secondary structure: π-helices as cryptic but widespread insertional variations of α-helices that enhance protein functionalityQ24605540
A series of PDB related databases for everyday needsQ24613221
GPCRDB: information system for G protein-coupled receptorsQ24616648
BioJava: an open-source framework for bioinformatics in 2012Q24630147
Three-dimensional structures of membrane proteins from genomic sequencingQ24630589
Biopython: freely available Python tools for computational molecular biology and bioinformaticsQ24643426
Jalview Version 2--a multiple sequence alignment editor and analysis workbenchQ24655519
The Protein Data Bank: a historical perspective.Q53164312
Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostabilityQ56898721
Crystallography: Protein Data BankQ57602037
Between objectivity and subjectivityQ59051365
The HSSP database of protein structure-sequence alignmentsQ70985228
Predicting local structural changes that result from point mutationsQ72543386
The HSSP database of protein structure-sequence alignmentsQ73031059
PROFbval: predict flexible and rigid residues in proteinsQ82458848
Escape from lysosomesQ84247158
The Bioperl toolkit: Perl modules for the life sciencesQ24682183
MRS: a fast and compact retrieval system for biological dataQ24812706
Improved methods for building protein models in electron density maps and the location of errors in these modelsQ26776980
Inference of macromolecular assemblies from crystalline stateQ27860457
Use of TLS parameters to model anisotropic displacements in macromolecular refinementQ27860499
Profile hidden Markov modelsQ27860536
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical featuresQ27860675
WHAT IF: a molecular modeling and drug design programQ27860734
Errors in protein structuresQ27860776
Overview of the CCP4 suite and current developmentsQ27860782
The Protein Data Bank: a computer-based archival file for macromolecular structuresQ27860989
Features and development of CootQ27861079
Announcing the worldwide Protein Data BankQ28186592
Pfam: the protein families databaseQ28660698
Protein structure prediction from sequence variationQ28914772
Presenting your structures: the CCP4mg molecular-graphics softwareQ29547443
Database of homology-derived protein structures and the structural meaning of sequence alignmentQ29614393
Protein disorder prediction: implications for structural proteomicsQ29615736
WIWS: a protein structure bioinformatics Web service collectionQ30389657
PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignmentsQ30409743
The HSSP data base of protein structure-sequence alignmentsQ30421955
The HSSP database of protein structure-sequence alignments and family profilesQ30429010
PDBe: Protein Data Bank in EuropeQ30703925
Automatic rebuilding and optimization of crystallographic structures in the Protein Data BankQ33454096
Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteinsQ35056453
The PDB_REDO server for macromolecular structure model optimizationQ35215523
A family-based approach reveals the function of residues in the nuclear receptor ligand-binding domainQ35847148
PDB_REDO: constructive validation, more than just looking for errorsQ35878830
Alpha-bulges in G protein-coupled receptorsQ40710135
The good, the bad and the dubious: VHELIBS, a validation helper for ligands and binding sitesQ42538022
Jmol– a paradigm shift in crystallographic visualizationQ43388727
Identification of functionally conserved residues with the use of entropy-variability plotsQ44544342
ProMate: a structure based prediction program to identify the location of protein-protein binding sitesQ44819444
Exploiting sequence and structure homologs to identify protein-protein binding sitesQ46059424
The PDBFINDER database: a summary of PDB, DSSP and HSSP information with added value.Q48634116
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issueDatabase issue
P304page(s)D364-8
P577publication date2014-10-28
P1433published inNucleic Acids ResearchQ135122
P1476titleA series of PDB-related databanks for everyday needs
P478volume43

Reverse relations

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