Application of an interpretable classification model on Early Folding Residues during protein folding

scientific article published on 05 January 2019

Application of an interpretable classification model on Early Folding Residues during protein folding is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/biodatamining/BittrichKLKVL19
P6179Dimensions Publication ID1111162169
P356DOI10.1186/S13040-018-0188-2
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/s13040-018-0188-2
P932PMC publication ID6321665
P698PubMed publication ID30627219

P50authorSebastian BittrichQ59676928
P2093author name stringDirk Labudde
Thomas Villmann
Christoph Leberecht
Florian Kaiser
Marika Kaden
P2860cites workBioJava: an open-source framework for bioinformatics in 2012Q24630147
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The nature of protein folding pathwaysQ26998903
Trimming Down a Protein Structure to Its Bare Foldons: SPATIAL ORGANIZATION OF THE COOPERATIVE UNITQ27675801
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical featuresQ27860675
Environment and exposure to solvent of protein atoms. Lysozyme and insulinQ28245387
The protein folding problemQ28284812
Theory for the folding and stability of globular proteinsQ28307969
Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stabilityQ28603075
Protein structure prediction from sequence variationQ28914772
Topological determinants of protein foldingQ30165337
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Protein folding and misfolding: mechanism and principles.Q30368801
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Data mining in bioinformatics using WekaQ30920089
Automatic classification of the acrosome status of boar spermatozoa using digital image processing and LVQ.Q33323660
Is protein folding hierarchic? I. Local structure and peptide foldingQ33543968
Is protein folding hierarchic? II. Folding intermediates and transition statesQ33546896
Limited Rank Matrix Learning, discriminative dimension reduction and visualization.Q50985341
Multiple contact network is a key determinant to protein folding rates.Q51741030
Generalized relevance learning vector quantization.Q52029115
Small-world view of the amino acids that play a key role in protein folding.Q53666366
Network Analysis of Protein Structures Identifies Functional ResiduesQ58008231
Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetasesQ58098472
ACPred-FL: a sequence-based predictor using effective feature representation to improve the prediction of anti-cancer peptidesQ62729907
The nucleation mechanism of protein folding: a survey of computer simulation studiesQ84741155
M6APred-EL: A Sequence-Based Predictor for Identifying N6-methyladenosine Sites Using Ensemble LearningQ90777186
Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple speciesQ91618176
The hydrogen exchange core and protein folding.Q33714720
Three key residues form a critical contact network in a protein folding transition stateQ33935381
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PLIP: fully automated protein-ligand interaction profilerQ35601315
Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.Q36199183
Experimental and Theoretical Aspects of Protein FoldingQ38112424
Early Folding Events, Local Interactions, and Conservation of Protein Backbone RigidityQ38273110
Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and functionQ38321925
Improved protein structure reconstruction using secondary structures, contacts at higher distance thresholds, and non-contactsQ38603470
Exploring the Sequence-based Prediction of Folding Initiation Sites in ProteinsQ38617959
The case for defined protein folding pathways.Q41293309
eProS--a database and toolbox for investigating protein sequence-structure-function relationships through energy profilesQ41762611
Protein folding intermediates: native-state hydrogen exchangeQ42322493
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Relationship between the native-state hydrogen exchange and folding pathways of a four-helix bundle proteinQ44031405
From protein sequence to dynamics and disorder with DynaMineQ44486815
Fast prediction of protein methylation sites using a sequence-based feature selection technique.Q45948462
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P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectcomputational mathematicsQ1122491
P304page(s)1
P577publication date2019-01-05
P1433published inBioData MiningQ15755473
P1476titleApplication of an interpretable classification model on Early Folding Residues during protein folding
P478volume12

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cites work (P2860)
Q91768536StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map
Q98158609The structural basis of the genetic code: amino acid recognition by aminoacyl-tRNA synthetases

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