| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2012PLoSO...749957S |
| P356 | DOI | 10.1371/JOURNAL.PONE.0049957 |
| P932 | PMC publication ID | 3517595 |
| P698 | PubMed publication ID | 23236358 |
| P5875 | ResearchGate publication ID | 233909671 |
| P50 | author | Tomonori Kaneko | Q42626068 |
| P2093 | author name string | Mark W Maciejewski | |
| Martin R Schiller | |||
| Michael R Gryk | |||
| Sanguthevar Rajasekaran | |||
| Pedro Romero | |||
| David P Sargeant | |||
| Vishal Thapar | |||
| Vamsi Kundeti | |||
| Keith Dunker | |||
| Shun-Cheng Li | |||
| P2860 | cites work | Protein disorder and the evolution of molecular recognition: theory, predictions and observations | Q47715145 |
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| Design and synthesis of a C7 mimetic for the predicted gamma-turn conformation found in several constrained RGD antagonists | Q67580870 | ||
| Cell adhesion promoting peptide GVKGDKGNPGWPGAP from the collagen type IV triple helix: cis/trans proline-induced multiple 1H NMR conformations and evidence for a KG/PG multiple turn repeat motif in the all-trans proline state | Q67939217 | ||
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| Evidence for residual structure in acid- and heat-denatured proteins | Q72327520 | ||
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| Synthesis and biological evaluation of type VI beta-turn templated RGD peptidomimetics | Q83915902 | ||
| Function and structure of inherently disordered proteins | Q22061740 | ||
| Crystal structures of the SH2 domain of Grb2: highlight on the binding of a new high-affinity inhibitor | Q24292256 | ||
| The SH2 and SH3 domain-containing protein GRB2 links receptor tyrosine kinases to ras signaling | Q24337017 | ||
| Distinct binding modes of two epitopes in Gab2 that interact with the SH3C domain of Grb2 | Q24337925 | ||
| The Protein Data Bank | Q24515306 | ||
| The structure and function of proline-rich regions in proteins | Q24528663 | ||
| BriX: a database of protein building blocks for structural analysis, modeling and design | Q24607469 | ||
| 3did: identification and classification of domain-based interactions of known three-dimensional structure | Q24607786 | ||
| MimoSA: a system for minimotif annotation | Q24607885 | ||
| Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences | Q24620727 | ||
| BioJava: an open-source framework for bioinformatics in 2012 | Q24630147 | ||
| Minimotif miner 2nd release: a database and web system for motif search | Q24655431 | ||
| Systematic discovery of new recognition peptides mediating protein interaction networks | Q24817114 | ||
| Crystal structure of the CCAAT box/enhancer-binding protein beta activating transcription factor-4 basic leucine zipper heterodimer in the absence of DNA | Q27627331 | ||
| Solution structure of the PX domain, a target of the SH3 domain | Q27632043 | ||
| Structure-function analysis of a phage display-derived peptide that binds to insulin-like growth factor binding protein 1 | Q27633283 | ||
| Structural basis for specific binding of the Gads SH3 domain to an RxxK motif-containing SLP-76 peptide: a novel mode of peptide recognition | Q27640629 | ||
| Crystal structures of the Dab homology domains of mouse disabled 1 and 2 | Q27641511 | ||
| Structure of the integrin alpha2beta1-binding collagen peptide | Q27642868 | ||
| Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK | Q27644837 | ||
| Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode | Q27651299 | ||
| Structural basis for distinctive recognition of fibrinogen γC peptide by the platelet integrin α IIb β 3 | Q27651670 | ||
| A check on rational drug design: crystal structure of a complex of human immunodeficiency virus type 1 protease with a novel gamma-turn mimetic inhibitor | Q27729829 | ||
| Structural basis for the specific interaction of lysine-containing proline-rich peptides with the N-terminal SH3 domain of c-Crk | Q27730215 | ||
| Solution structure and peptide binding of the SH3 domain from human Fyn | Q27733382 | ||
| Exploiting the basis of proline recognition by SH3 and WW domains: design of N-substituted inhibitors | Q27766343 | ||
| Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features | Q27860675 | ||
| MOLMOL: a program for display and analysis of macromolecular structures | Q27860873 | ||
| Intrinsically disordered protein | Q28191444 | ||
| Eptifibatide: a potent inhibitor of the platelet receptor integrin glycoprotein IIb/IIIa | Q28193526 | ||
| WW and SH3 domains, two different scaffolds to recognize proline-rich ligands | Q28209648 | ||
| Roles of phosphorylation and helix propensity in the binding of the KIX domain of CREB-binding protein by constitutive (c-Myb) and inducible (CREB) activators | Q28219104 | ||
| Mona/Gads SH3C binding to hematopoietic progenitor kinase 1 (HPK1) combines an atypical SH3 binding motif, R/KXXK, with a classical PXXP motif embedded in a polyproline type II (PPII) helix | Q28508777 | ||
| The importance of intrinsic disorder for protein phosphorylation | Q28776125 | ||
| Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversity | Q28910326 | ||
| Protein disorder prediction: implications for structural proteomics | Q29615736 | ||
| GlobPlot: Exploring protein sequences for globularity and disorder | Q29615737 | ||
| Sequence complexity of disordered protein | Q29616420 | ||
| The PROSITE database, its status in 2002 | Q29618301 | ||
| The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains | Q29618469 | ||
| Structural basis for the binding of proline-rich peptides to SH3 domains | Q29620408 | ||
| Interactome-wide prediction of short, disordered protein interaction motifs in humans | Q30010246 | ||
| Local structural disorder imparts plasticity on linear motifs. | Q30158016 | ||
| The crystal structure of a c-Src complex in an active conformation suggests possible steps in c-Src activation | Q30160222 | ||
| The structure of "unstructured" regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition | Q30160324 | ||
| A miniprotein scaffold used to assemble the polyproline II binding epitope recognized by SH3 domains. | Q30163870 | ||
| Can we infer peptide recognition specificity mediated by SH3 domains? | Q30165528 | ||
| Intramolecular binding of a proximal PPII helix to an SH3 domain in the fusion protein SH3Hck : PPIIhGAP. | Q30167512 | ||
| Conformation of the RNA polymerase II C-terminal domain: circular dichroism of long and short fragments. | Q30175230 | ||
| SH3 domains and drug design: ligands, structure, and biological function | Q30176672 | ||
| Prediction of tight turns and their types in proteins. | Q30327365 | ||
| Protein structure and enzyme action. | Q30334053 | ||
| The interplay between structure and function in intrinsically unstructured proteins. | Q30350853 | ||
| Length-dependent prediction of protein intrinsic disorder. | Q30353929 | ||
| DOMINO: a database of domain-peptide interactions | Q30483309 | ||
| Residual structure in disordered peptides and unfolded proteins from multivariate analysis and ab initio simulation of Raman optical activity data | Q31122954 | ||
| Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners | Q33325589 | ||
| Accurate prediction of peptide binding sites on protein surfaces. | Q33422930 | ||
| SLiM on Diet: finding short linear motifs on domain interaction interfaces in Protein Data Bank | Q33452235 | ||
| Evidence for the concerted evolution between short linear protein motifs and their flanking regions | Q33479542 | ||
| Crystallographic analysis of endogenous peptides associated with HLA-DR1 suggests a common, polyproline II-like conformation for bound peptides | Q33575103 | ||
| Partitioning of Minimotifs Based on Function with Improved Prediction Accuracy | Q33680530 | ||
| Amino acids with hydrogen-bonding side chains have an intrinsic tendency to sample various turn conformations in aqueous solution. | Q33891175 | ||
| The structural basis of peptide-protein binding strategies. | Q34099027 | ||
| Normalization of nomenclature for peptide motifs as ligands of modular protein domains | Q34120337 | ||
| Attributes of short linear motifs. | Q34215453 | ||
| Prediction of short linear protein binding regions | Q34232068 | ||
| A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions | Q34372655 | ||
| Achieving high accuracy prediction of minimotifs | Q34429532 | ||
| Minimotif Miner: a tool for investigating protein function | Q34496067 | ||
| Propensities of aromatic amino acids versus leucine and proline to induce residual structure in the denatured-state ensemble of iso-1-cytochrome c. | Q34512287 | ||
| Understanding eukaryotic linear motifs and their role in cell signaling and regulation. | Q34782197 | ||
| Is there or isn't there? The case for (and against) residual structure in chemically denatured proteins | Q36242580 | ||
| Protein-protein interaction through beta-strand addition | Q36530750 | ||
| Thermodynamics of protein denatured states | Q36716459 | ||
| A careful disorderliness in the proteome: sites for interaction and targets for future therapies. | Q37088664 | ||
| Residual structure within the disordered C-terminal segment of p21(Waf1/Cip1/Sdi1) and its implications for molecular recognition. | Q37255426 | ||
| Hydrogen-bonded synthetic mimics of protein secondary structure as disruptors of protein-protein interactions. | Q37786568 | ||
| Casein kinase 2: an 'eminence grise' in cellular regulation? | Q37954522 | ||
| Nuclear magnetic resonance studies of residual structure in thermally unfolded ribonuclease A | Q40340851 | ||
| Structural and functional aspects of RGD-containing protein antagonists of glycoprotein IIb-IIIa | Q40533631 | ||
| Protein-peptide interactions | Q40540879 | ||
| Biophysical characterization of the unstructured cytoplasmic domain of the human neuronal adhesion protein neuroligin 3. | Q40896817 | ||
| The concept of a random coil. Residual structure in peptides and denatured proteins | Q41394913 | ||
| Conservation of polyproline II helices in homologous proteins: implications for structure prediction by model building | Q41869924 | ||
| Non-random-coil behavior as a consequence of extensive PPII structure in the denatured state. | Q42254511 | ||
| A novel constrained reduced-amide inhibitor of HIV-1 protease derived from the sequential incorporation of gamma-turn mimetics into a model substrate | Q42288396 | ||
| PepX: a structural database of non-redundant protein-peptide complexes | Q42934096 | ||
| Nonpeptide RGD antagonists: a novel class of mimetics, the 5,8-disubstituted 1-azabicyclo[5.2.0]nonan-2-one lactam. | Q44406420 | ||
| Water network dynamics at the critical moment of a peptide's beta-turn formation: a molecular dynamics study | Q45033669 | ||
| Interdomain cooperativity of calmodulin bound to melittin preferentially increases calcium affinity of sites I and II. | Q46823198 | ||
| Flavors of protein disorder | Q47700031 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 12 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | e49957 | |
| P577 | publication date | 2012-12-07 | |
| P1433 | published in | PLOS One | Q564954 |
| P1476 | title | Secondary structure, a missing component of sequence-based minimotif definitions | |
| P478 | volume | 7 |
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| Q64913346 | The carboxy-terminus, a key regulator of protein function. |
| Q36621607 | The metastasis-inducing protein AGR2 is O-glycosylated upon secretion from mammary epithelial cells |
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