Identification of common molecular subsequences (scientific article (publication date: 25 March 1981))

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Q58796892	Bioinformatics applications on Apache Spark
Q35051893	Bioinformatics challenges for personalized medicine
Q90720759	Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives
Q28143986	Bioinformatics in protein analysis
Q35074886	Bioinformatics in the post-sequence era.
Q57002632	Bioinformatics of Nuclear Receptors
Q92882640	Bioinformatics of nanopore sequencing
Q28656061	Bioinformatics of prokaryotic RNAs
Q55421536	Bioisosteric similarity of drugs in virtual screening.
Q42647582	Biology's new Rosetta stone
Q36930748	Biosequence Similarity Search on the Mercury System
Q37644182	Biotechnology of polyketides: new breath of life for the novel antibiotic genetic pathways discovery through metagenomics
Q57052679	Biotite: a unifying open source computational biology framework in Python
Q38386231	Bisulfite-Based DNA Methylation Analysis from Recent and Archived Formalin-Fixed, Paraffin Embedded Colorectal Tissue Samples
Q92239384	Bit-parallel sequence-to-graph alignment
Q34456695	BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm
Q63246821	Blazing Signature Filter: a library for fast pairwise similarity comparisons
Q38562776	Blocks database and its applications
Q40775428	Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures
Q35741840	Breaking the computational barriers of pairwise genome comparison.
Q28278221	Building and analyzing protein interactome networks by cross-species comparisons
Q33260503	Building multiclass classifiers for remote homology detection and fold recognition
Q35590341	Buried ionizable networks are an ancient hallmark of G protein-coupled receptor activation
Q35606560	C-terminal half of Salmonella enterica WbaP (RfbP) is the galactosyl-1-phosphate transferase domain catalyzing the first step of O-antigen synthesis
Q37682950	C-terminal nsP1a protein of human astrovirus colocalizes with the endoplasmic reticulum and viral RNA.
Q30380668	CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area
Q79210041	CAFASP3 in the spotlight of EVA
Q46043640	CAFE: aCcelerated Alignment-FrEe sequence analysis
Q27860964	CAP3: A DNA sequence assembly program
Q33303061	CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes
Q36086096	CATO: The Clone Alignment Tool
Q30484194	CBESW: sequence alignment on the Playstation 3.
Q48065753	CENSOR--a program for identification and elimination of repetitive elements from DNA sequences
Q56447916	CERMINE: automatic extraction of structured metadata from scientific literature
Q34779484	CHILD: a new tool for detecting low-abundance insertions and deletions in standard sequence traces
Q35563410	CHOPER filters enable rare mutation detection in complex mutagenesis populations by next-generation sequencing
Q59789153	CLAME: a new alignment-based binning algorithm allows the genomic description of a novel Xanthomonadaceae from the Colombian Andes
Q33598623	CODA: accurate detection of functional associations between proteins in eukaryotic genomes using domain fusion
Q99557055	COMPARATIVE CIRCULATION DYNAMICS OF THE FIVE MAIN HIV TYPES IN CHINA
Q78840290	COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance
Q33453075	CORAL: aligning conserved core regions across domain families
Q33445984	CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides.
Q113307503	CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
Q27496515	CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
Q60907484	CRISPR analysis suggests that small circular single-stranded DNA smacoviruses infect Archaea instead of humans
Q21284191	CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Q35937941	CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU.
Q34655129	CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions
Q30495608	CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
Q30488136	CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units
Q41886291	CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding
Q33529077	CYNTENATOR: progressive gene order alignment of 17 vertebrate genomes
Q36396802	CaMELS: In silico prediction of calmodulin binding proteins and their binding sites
Q34500878	Cache-Oblivious parallel SIMD Viterbi decoding for sequence search in HMMER.
Q43821653	Cadmium resistance conferred to yeast by a non-metallothionein-encoding gene of the earthworm Enchytraeus
Q97519645	Calibrating Seed-Based Heuristics to Map Short Reads With Sesame
Q27937638	Calorimetric determination of thermodynamic parameters of reaction reveals different enthalpic compensations of the yeast hexokinase isozymes
Q37204496	Campylobacter jejuni glycosylation island important in cell charge, legionaminic acid biosynthesis, and colonization of chickens
Q34962407	Cancer gene discovery in mouse and man.
Q49566680	Cancer transcriptome profiling at the juncture of clinical translation.
Q37172278	Cardiovascular transcriptomics and epigenomics using next-generation sequencing: challenges, progress, and opportunities
Q36974356	Cell wall chitosaccharides are essential components and exposed patterns of the phytopathogenic oomycete Aphanomyces euteiches
Q47180528	Cell-Type Transcriptomes of the Multicellular Green Alga Volvox carteri Yield Insights into the Evolutionary Origins of Germ and Somatic Differentiation Programs.
Q33569225	Cgaln: fast and space-efficient whole-genome alignment
Q38871921	Change of function of the wheat stress-responsive transcriptional repressor TaRAP2.1L by repressor motif modification
Q53579445	Changes in gene expression during male meiosis in Petunia hybrida.
Q30392866	Chapter 1. Target selection in structural genomics projects to increase knowledge of protein structure and function space
Q33431525	Chapter 8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data
Q51908976	Characteristic distribution of L-tuple for DNA primary sequence.
Q42277431	Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters
Q24623742	Characterization and repeat analysis of the compact genome of the freshwater pufferfish Tetraodon nigroviridis
Q36676505	Characterization of Drosophila melanogaster JmjC+N histone demethylases.
Q28579902	Characterization of a novel isoform of caspase-9 that inhibits apoptosis
Q84952552	Characterization of a viral synergism in the monocot Brachypodium distachyon reveals distinctly altered host molecular processes associated with disease
Q33827432	Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B') recombinant strain in China
Q36804104	Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community
Q32061586	Characterization of rbcL group IA introns from two colonial volvocalean species (Chlorophyceae).
Q33273709	Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli
Q47951952	Characterization of telomere-subtelomere junctions in Silene latifolia
Q49036360	Characterization of the ABCA transporter subfamily: identification of prokaryotic and eukaryotic members, phylogeny and topology.
Q46811614	Characterization of the complete mitochondrial genome of flower-breeding Drosophila incompta (Diptera, Drosophilidae).
Q39898871	Characterization of the desulfurization genes from Rhodococcus sp. strain IGTS8.
Q44675493	Characterization of the dynamics of hepatitis B virus resistance to adefovir by ultra-deep pyrosequencing.
Q40230014	Characterization of the outer membrane receptor ShuA from the heme uptake system of Shigella dysenteriae. Substrate specificity and identification of the heme protein ligands
Q36330194	Chemical property based sequence characterization of PpcA and its homolog proteins PpcB-E: A mathematical approach
Q91704782	Chemical shift-based methods in NMR structure determination
Q36363386	ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data
Q30844042	Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses
Q31030687	Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error
Q50662838	Choosing BLAST options for better detection of orthologs as reciprocal best hits.
Q33236280	Choosing the best heuristic for seeded alignment of DNA sequences
Q38393061	ChromatoGate: A Tool for Detecting Base Mis-Calls in Multiple Sequence Alignments by Semi-Automatic Chromatogram Inspection
Q35097637	Churchill: an ultra-fast, deterministic, highly scalable and balanced parallelization strategy for the discovery of human genetic variation in clinical and population-scale genomics
Q36886880	Circular sequence comparison: algorithms and applications
Q33686647	Classification of ncRNAs using position and size information in deep sequencing data
Q52776470	Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers.
Q33373612	CleanEST: a database of cleansed EST libraries
Q64921904	Clinical Data Analytics With Time-Related Graphical User Interfaces: Application to Pharmacovigilance.
Q68813063	Cloning and analysis of the 5' region of the rat bone/liver/kidney/placenta alkaline phosphatase gene. A dual-function promoter
Q24310751	Cloning and characterization of the cDNA for human airway trypsin-like protease
Q54477129	Cloning and expression of the N-acetylmuramidase gene from Streptomyces rutgersensis H-46.
Q42619563	Cloning and expression of the genes involved in the production of and immunity against the bacteriocin lacticin RM.
Q30730663	Cloning of a centromere binding factor 3d (CBF3D) gene from Candida glabrata
Q48073643	Cloning, expression, sequence analysis, and site-directed mutagenesis of the Tn5306-encoded N5-(carboxyethyl)ornithine synthase from Lactococcus lactis K1.
Q36258724	Cloning, nucleotide sequence, and expression in Escherichia coli of the exotoxin A structural gene of Pseudomonas aeruginosa
Q48065497	Cloning, sequencing, and expression in escherichia coli of OxlT, the oxalate:formate exchange protein of Oxalobacter formigenes
Q37193342	CloudBurst: highly sensitive read mapping with MapReduce
Q38661398	CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins
Q34282435	Clustering and analysis of protein families
Q33320227	Clustering exact matches of pairwise sequence alignments by weighted linear regression
Q31043887	Clustering microarray gene expression data using weighted Chinese restaurant process
Q24814202	Coiled-coil protein composition of 22 proteomes--differences and common themes in subcellular infrastructure and traffic control
Q27322205	Coiled-coil proteins facilitated the functional expansion of the centrosome
Q45762699	Colonization and diversification of the spider genus Pholcus Walckenaer, 1805 (Araneae, Pholcidae) in the Macaronesian archipelagos: evidence for long-term occupancy yet rapid recent speciation
Q36101002	Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control
Q34333469	Combinatorial motif analysis of regulatory gene expression in Mafb deficient macrophages
Q93271614	Combinatorial processing of bacterial and host-derived innate immune stimuli at the single-cell level
Q91977080	Combined alignments of sequences and domains characterize unknown proteins with remotely related protein search PSISearch2D
Q33371114	Combining classifiers for improved classification of proteins from sequence or structure
Q50704152	Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection.
Q30668843	Combining sensitive database searches with multiple intermediates to detect distant homologues
Q41105808	Community detection in sequence similarity networks based on attribute clustering
Q30366550	Comparative Protein Structure Modeling Using MODELLER
Q41144462	Comparative Protein Structure Modeling Using MODELLER.
Q46629154	Comparative Protein Structure Modeling Using MODELLER.
Q70965907	Comparative analysis of Homo sapiens and Mus musculus cyclin-dependent kinase (CDK) inhibitor genes p16 (MTS1) and p15 (MTS2)
Q42613622	Comparative analysis of algorithms for next-generation sequencing read alignment
Q42434262	Comparative analysis of bacterial genomes: identification of divergent regions in mycobacterial strains using an anchor-based approach
Q33284247	Comparative analysis of long DNA sequences by per element information content using different contexts
Q33875924	Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
Q35505176	Comparative analysis of nucleic acid sequences by their general constraints
Q30363206	Comparative analysis of protein structure alignments
Q21203108	Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences
Q43242608	Comparative ecophysiology and genomics of the toxic unicellular alga Fibrocapsa japonica
Q21266681	Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment
Q29614229	Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster
Q33432993	Comparative genomic hybridization: microarray design and data interpretation
Q21266666	Comparative genomics of emerging pathogens in the Candida glabrata clade
Q36777813	Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex
Q34187800	Comparative genomics: genome-wide analysis in metazoan eukaryotes
Q80385878	Comparative genomics: methods and applications
Q30329566	Comparative modeling of CASP4 target proteins: combining results of sequence search with three-dimensional structure assessment.
Q57752842	Comparative modeling of the three-dimensional structures of family 3 glycoside hydrolases
Q29615142	Comparative protein structure modeling using Modeller
Q56989386	Comparative studies of alignment, alignment-free and SVM based approaches for predicting the hosts of viruses based on viral sequences
Q30848086	Comparative study of the alignment method on experimental and simulated chromatographic data
Q33876753	Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.
Q22065320	Comparative transcriptomics of early dipteran development
Q41642450	Comparing the Statistical Fate of Paralogous and Orthologous Sequences
Q33610866	Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays
Q31095892	Comparison of Nanostring nCounter® Data on FFPE Colon Cancer Samples and Affymetrix Microarray Data on Matched Frozen Tissues
Q30444045	Comparison of methods for searching protein sequence databases.
Q30360166	Comparison of protein structures by growing neighborhood alignments.
Q92072842	Complement Genome Annotation Lift Over Using a Weighted Sequence Alignment Strategy
Q40510754	Complete MHC haplotype sequencing for common disease gene mapping
Q36135331	Complete Mitochondrial Genome Sequence of Sunflower (Helianthus annuus L.).
Q33300358	Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis
Q33863844	Complete nucleotide sequence of primitive vertebrate immunoglobulin light chain genes
Q21093244	Complete probabilistic analysis of RNA shapes
Q40645888	Completion of molecular characterization of Toscana phlebovirus genome: nucleotide sequence, coding strategy of M genomic segment and its amino acid sequence comparison to other phleboviruses.
Q54942776	Complex modular architecture around a simple toolkit of wing pattern genes.
Q34634230	Complex regulation by Apetala2 domain-containing transcription factors revealed through analysis of the stress-responsive TdCor410b promoter from durum wheat
Q90345525	Component-Based Design and Assembly of Heuristic Multiple Sequence Alignment Algorithms
Q33265940	Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST
Q27658581	Comprehensive Molecular Structure of the Eukaryotic Ribosome
Q34249789	Comprehensive comparison of graph based multiple protein sequence alignment strategies
Q35870237	Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis.
Q59792413	Comprehensive evaluation of RNA-seq analysis pipelines in diploid and polyploid species
Q45855528	Comprehensive genomic access to vector integration in clinical gene therapy
Q34499593	Comprehensive human transcription factor binding site map for combinatory binding motifs discovery
Q41102323	Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.
Q56607500	Compressed Directed Acyclic Word Graph with Application in Local Alignment
Q48363646	Compressed indexing and local alignment of DNA.
Q30832630	Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment
Q27021183	Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies
Q38378372	Compressive sensing DNA microarrays
Q38439562	Computational Design of a DNA- and Fc-Binding Fusion Protein
Q57009010	Computational Prediction of Protein–Protein Interactions
Q36092098	Computational Study of Drugs by Integrating Omics Data with Kernel Methods
Q48080646	Computational analysis of RNAs
Q28686251	Computational analysis of bacterial RNA-Seq data
Q36548168	Computational approaches for the prediction of protein function in the mitochondrion
Q34758162	Computational assessment of the cooperativity between RNA binding proteins and MicroRNAs in Transcript Decay
Q34233989	Computational biophysical, biochemical, and evolutionary signature of human R-spondin family proteins, the member of canonical Wnt/β-catenin signaling pathway
Q36168495	Computational characterization of proteins
Q41741173	Computational genetics: finding protein function by nonhomology methods.
Q34579833	Computational identification and characterization of putative miRNAs in Heliothis virescens
Q33937734	Computational methods for Gene Orthology inference
Q34134767	Computational methods for protein function analysis.
Q43092801	Computational prediction of microRNAs encoded in viral and other genomes.
Q38959025	Computational probing protein-protein interactions targeting small molecules
Q42693133	Computational survey of sequence specificity for protein terminal tags covering nine organisms and its application to protein identification
Q21284304	Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives
Q50068915	Computational tools for plant small RNA detection and categorization.
Q35583039	Computational tools for the study of allergens
Q34436652	Computational workflow for analysis of gain and loss of genes in distantly related genomes.
Q38634659	Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors.
Q35533676	Computer analysis and structure prediction of nucleic acids and proteins
Q52581042	Computer analysis of nucleic acid sequences.
Q36013507	Computer methods for locating kinetoplastid cryptogenes
Q40559663	Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences
Q40492315	Computer program for the analysis and the management of DNA sequences
Q46119242	Computer-aided design of nano-filter construction using DNA self-assembly.
Q41597356	Computing Platforms for Big Biological Data Analytics: Perspectives and Challenges
Q34324682	Computing the protein binding sites
Q36863838	Conjugation-specific genes in the ciliate Euplotes crassus: gene expression from the old macronucleus.
Q33914465	Conotoxin protein classification using free scores of words and support vector machines.
Q27860740	Consed: a graphical tool for sequence finishing
Q34609786	Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments
Q28187467	Conservation analysis and structure prediction of the SH2 family of phosphotyrosine binding domains
Q33633707	Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants.
Q57065043	Conservation of amino acids in multiple alignments: aspartic acid has unexpected conservation
Q80442944	Conservation of amino acids into multiple alignments involved in pairwise interactions in three-dimensional protein structures
Q36362631	Conservation of genetic information: a code for site-specific DNA recognition
Q30372988	Conservation of pro-longevity genes among mammals.
Q24569886	Conserved proximal promoter elements control repulsive guidance molecule c/hemojuvelin (Hfe2) gene transcription in skeletal muscle
Q39409646	Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli.
Q28602773	Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation
Q24634264	Constitutive overexpression of a growth-regulated gene in transformed Chinese hamster and human cells
Q39609838	Constitutive overexpression of the TaNF-YB4 gene in transgenic wheat significantly improves grain yield
Q52365021	Constrained multiple sequence alignment using XALIGN.
Q34019249	Construction and characterization of a normalized cDNA library from the river snail Bellamya aeruginosa after exposure to copper
Q59068765	Construction of Time-Stamped Mobility Map for Path Tracking via Smith-Waterman Measurement Matching
Q30934049	Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer
Q34326495	Contact-based sequence alignment
Q91687834	Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations
Q37669289	Contour based object detection using part bundles
Q98158849	Convolutional neural networks improve fungal classification
Q46653372	Copper homeostasis at the host vibrio interface: lessons from intracellular vibrio transcriptomics
Q33321070	Coral life history and symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
Q33345912	Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise
Q42692621	CpGislandEVO: a database and genome browser for comparative evolutionary genomics of CpG islands.
Q54445793	Cross-reactivity of autoantibodies from patients with epidermolysis bullosa acquisita with murine collagen VII.
Q34984226	Cross-species analysis of biological networks by Bayesian alignment
Q36804831	Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
Q33384997	CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments
Q59118319	Crowd-Sourced Mobility Mapping for Location Tracking Using Unlabeled Wi-Fi Simultaneous Localization and Mapping
Q24597317	Crystal structure of the flavohemoglobin from Alcaligenes eutrophus at 1.75 A resolution
Q59374199	CubeLoad: A Parametric Generator of Realistic OLAP Workloads
Q27902360	DASPfind: new efficient method to predict drug–target interactions
Q37215679	DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
Q35914115	DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Q35035790	DIAN: a novel algorithm for genome ontological classification
Q47330239	DIFFERENTIATION OF MITOCHONDRIAL DNA POLYMORPHISMS IN POPULATIONS OF FIVE JAPANESE ABIES SPECIES.
Q35077639	DIME: a novel framework for de novo metagenomic sequence assembly
Q42044276	DINIES: drug-target interaction network inference engine based on supervised analysis.
Q33998756	DNA barcode sequence identification incorporating taxonomic hierarchy and within taxon variability
Q33280629	DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies
Q35813626	DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer
Q33889077	DNA ligase I is recruited to sites of DNA replication by an interaction with proliferating cell nuclear antigen: identification of a common targeting mechanism for the assembly of replication factories
Q47972225	DNA sequence comparison considering both amino acid and nucleotide insertions/deletions because of evolution and experimental error
Q34979106	DNA sequence of the putA gene from Salmonella typhimurium: a bifunctional membrane-associated dehydrogenase that binds DNA.
Q59336763	DNA sequences alignment in multi-GPUs: acceleration and energy payoff
Q47903841	DNA sequencing at 40: past, present and future
Q42572866	DNA topoisomerase II cleaves at specific sites in the 5' flanking region of c-fos proto-oncogenes in vitro
Q48293367	DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats.
Q33974328	DOPA: GPU-based protein alignment using database and memory access optimizations
Q55381330	DPubChem: a web tool for QSAR modeling and high-throughput virtual screening.
Q33579787	DSAP: deep-sequencing small RNA analysis pipeline
Q31001472	Data clustering in life sciences
Q37611313	Database of Periodic DNA Regions in Major Genomes.
Q29614393	Database of homology-derived protein structures and the structural meaning of sequence alignment
Q36353097	De Novo Assembly of the Pea (Pisum sativum L.) Nodule Transcriptome.
Q46124159	De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
Q37521010	De novo genome assembly of the fungal plant pathogen Pyrenophora semeniperda.
Q55035505	De novo main-chain modeling for EM maps using MAINMAST.
Q73146604	De novo protein design. II. Plasticity in sequence space
Q35751707	De novo sequencing and homology searching
Q36927138	De novo sequencing and variant calling with nanopores using PoreSeq
Q35685663	Deciding when to stop: efficient experimentation to learn to predict drug-target interactions
Q89607080	DeepCPI: A Deep Learning-based Framework for Large-scale in silico Drug Screening
Q92751234	DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences
Q58757805	DeepDTA: deep drug-target binding affinity prediction
Q55514164	DeepFam: deep learning based alignment-free method for protein family modeling and prediction.
Q57013695	Deletion variants of l-hydroxyisocaproate dehydrogenase. Probing substrate specificity
Q44669060	Delta-aminolevulinic acid dehydratase from Plasmodium falciparum: indigenous versus imported.
Q38396682	Demystifying computer science for molecular ecologists
Q30370558	Denatured-state energy landscapes of a protein structural database reveal the energetic determinants of a framework model for folding.
Q34478586	Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction
Q30383371	DescFold: a web server for protein fold recognition.
Q41810917	Descriptor-based protein remote homology identification
Q42849491	Design and verification of a pangenome microarray oligonucleotide probe set for Dehalococcoides spp.
Q24804727	Detailed protein sequence alignment based on Spectral Similarity Score (SSS).
Q34900879	Detecting Alu insertions from high-throughput sequencing data
Q35025513	Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence
Q37139041	Detecting and comparing non-coding RNAs in the high-throughput era
Q52039145	Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences.
Q35808034	Detecting microsatellites within genomes: significant variation among algorithms
Q41446970	Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits
Q28743231	Detecting remote evolutionary relationships among proteins by large-scale semantic embedding
Q30385679	Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison.
Q28276670	Detection of internal repeats: how common are they?
Q58605199	Detection of long non-coding RNA homology, a comparative study on alignment and alignment-free metrics
Q40134363	Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing.
Q51356483	Detection of protein complexes using a protein ranking algorithm.
Q36743900	Detection of protein fold similarity based on correlation of amino acid properties
Q35122769	Detection, characterization and evolution of internal repeats in Chitinases of known 3-D structure.
Q40457004	Determinants encoding fimbriae type 1 in fecal Escherichia coli are associated with increased frequency of bacteriocinogeny
Q40780476	Determinants for membrane association of the hepatitis C virus RNA-dependent RNA polymerase
Q24681462	Determination and analysis of the complete nucleotide sequence of human herpesvirus
Q36216061	Determination of a Screening Metric for High Diversity DNA Libraries
Q30351263	Determining relevant features to recognize electron density patterns in x-ray protein crystallography.
Q28649315	Determining similarity of scientific entities in annotation datasets
Q33361769	Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.).
Q28586227	Developing integrated crop knowledge networks to advance candidate gene discovery
Q36386570	Developing of the Computer Method for Annotation of Bacterial Genes.
Q33613727	Development and application of an algorithm to compute weighted multiple glycan alignments
Q41807657	Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq
Q86938754	Development of Highly Potent GAT1 Inhibitors: Synthesis of Nipecotic Acid Derivatives by Suzuki-Miyaura Cross-Coupling Reactions
Q36145651	Development of a motif-based topology-independent structure comparison method to identify evolutionarily related folds
Q39688104	Dictionary-driven protein annotation
Q33781543	Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome.
Q60631809	Differences between predicted and observed sequences inSaccharomyces cerevisiae
Q33248719	Differences in the evolutionary history of disease genes affected by dominant or recessive mutations
Q35209191	Different dynamics of genome content shuffling among host-specificity groups of the symbiotic actinobacterium Frankia
Q24604743	Different forms of Go alpha mRNA arise by alternative splicing of transcripts from a single gene on human chromosome 16
Q47753580	Differential Interaction of Antimicrobial Peptides with Lipid Structures Studied by Coarse-Grained Molecular Dynamics Simulations
Q42677982	Differential genome analysis applied to the species-specific features of Helicobacter pylori
Q56918589	Differential genome display
Q33341410	Differential transcriptional response of Bifidobacterium longum to human milk, formula milk, and galactooligosaccharide
Q38517280	Differentiation of the two rice subspecies indica and japonica: a Gene Ontology perspective
Q60930436	Discerning novel splice junctions derived from RNA-seq alignment: a deep learning approach
Q52319072	Discovering and understanding genes in human DNA sequence using GRAIL.
Q39085941	Discovering common stem-loop motifs in unaligned RNA sequences
Q42019916	Discovering microRNAs from Bombyx mori nucleopolyhedrosis virus
Q42679127	Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale
Q35084961	Discovering the targets of drugs via computational systems biology
Q42697230	Discovery and genotyping of novel sequence insertions in many sequenced individuals
Q35038195	Discovery of recurrent structural variants in nasopharyngeal carcinoma
Q33244586	Discrete profile comparison using information bottleneck
Q36319763	Discriminating between HuR and TTP binding sites using the k-spectrum kernel method.
Q37077421	Disease-specific motifs can be identified in circulating nucleic acids from live elk and cattle infected with transmissible spongiform encephalopathies
Q30401434	Distributed structure determination at the JCSG.
Q28258958	Distribution and diversity of phytate-mineralizing bacteria
Q46446427	Distribution and functional impact of DNA copy number variation in the rat.
Q34391314	Distributional regimes for the number of k-word matches between two random sequences
Q61124464	Diverse motif ensembles specify non-redundant DNA binding activities of AP-1 family members in macrophages
Q53439999	Domain analysis of 3 Keto Acyl-CoA synthase for structural variations in Vitis vinifera and Oryza brachyantha using comparative modelling.
Q34172787	Domains, motifs and clusters in the protein universe
Q46802549	Dominance hierarchy arising from the evolution of a complex small RNA regulatory network.
Q58007685	Draft Assembly and Annotation of the Pneumocystis carinii Genome
Q52449047	Drosophila Krüppel protein is a transcriptional repressor.
Q28475474	Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors
Q34285305	Drug repositioning by integrating target information through a heterogeneous network model
Q28534990	Drug repositioning by kernel-based integration of molecular structure, molecular activity, and phenotype data
Q43122201	Drug target predictions based on heterogeneous graph inference.
Q60921457	Drug-Target Interaction Prediction via Dual Laplacian Graph Regularized Matrix Completion
Q47845354	Drug-target interaction prediction by random walk on the heterogeneous network
Q33597328	Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework
Q41888887	Drug-target interaction prediction through domain-tuned network-based inference.
Q97418218	Drug-target interaction prediction using semi-bipartite graph model and deep learning
Q38238930	Drug-target interaction prediction via chemogenomic space: learning-based methods
Q38568763	Drug-target interaction prediction: databases, web servers and computational models
Q33937330	Dtrk, a Drosophila gene related to the trk family of neurotrophin receptors, encodes a novel class of neural cell adhesion molecule
Q28754895	Dual coding of siRNAs and miRNAs by plant transposable elements
Q36834041	Duplication of pilus gene complexes of Haemophilus influenzae biogroup aegyptius
Q58689330	Dynamic Circuit Specialisation for Key-Based Encryption Algorithms and DNA Alignment
Q33738330	Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana
Q33840013	Dynamic linear model for the identification of miRNAs in next-generation sequencing data
Q30436603	Dynamic programming algorithms for biological sequence comparison
Q42949337	Dynamic use of multiple parameter sets in sequence alignment
Q91843592	Dynamical comparison between Drosha and Dicer reveals functional motion similarities and dissimilarities
Q60047413	Dynamics based clustering of globin family members
Q27935438	Dynein and dynactin leverage their bivalent character to form a high-affinity interaction
Q39718439	EAGER: efficient ancient genome reconstruction
Q33254302	EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot
Q30817064	EVEREST: automatic identification and classification of protein domains in all protein sequences
Q57555287	EasyPDP: An Efficient Parallel Dynamic Programming Runtime System for Computational Biology
Q35020858	EbEST: an automated tool using expressed sequence tags to delineate gene structure
Q36270174	Edlib: a C/C++ library for fast, exact sequence alignment using edit distance
Q33580419	Effect of Wnt3a on keratinocytes utilizing in vitro and bioinformatics analysis
Q33574360	Effect of genomic distance on coexpression of coregulated genes in E. coli.
Q33901767	Effective function annotation through catalytic residue conservation
Q42635669	Effective large-scale sequence similarity searches
Q30468814	Effective protein sequence comparison
Q41903896	Effectiveness of measures requiring and not requiring prior sequence alignment for estimating the dissimilarity of natural sequences
Q33732704	Effects of Protein Corona on IAPP Amyloid Aggregation, Fibril Remodelling, and Cytotoxicity
Q47650159	Efficient algorithms for searching for exact repetition of nucleotide sequences
Q38784161	Efficient and Accurate Algorithm for Cleaved Fragments Prediction (CFPA) in Protein Sequences Dataset Based on Consensus and Its Variants: A Novel Degradomics Prediction Application.
Q30383167	Efficient and automated large-scale detection of structural relationships in proteins with a flexible aligner
Q30797951	Efficient clustering of large EST data sets on parallel computers
Q33754244	Efficient computation of optimal oligo-RNA binding
Q35860618	Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs
Q57031084	Efficient multi-task chemogenomics for drug specificity prediction
Q35536115	Eighteen years of molecular genotyping the hemophilia inversion hotspot: from southern blot to inverse shifting-PCR.
Q38558981	Embedding strategies for effective use of information from multiple sequence alignments
Q35977134	Emergence of a daptomycin-non-susceptible Enterococcus faecium strain that encodes mutations in DNA repair genes after high-dose daptomycin therapy
Q41139907	Engineering new balancer chromosomes in C. elegans via CRISPR/Cas9
Q42365339	Enhanced fold recognition using efficient short fragment clustering
Q28750347	Enhancing navigation in biomedical databases by community voting and database-driven text classification
Q36599707	Ensembl comparative genomics resources
Q37691606	Enzymes depending on the pterin molybdenum cofactor: sequence families, spectroscopic properties of molybdenum and possible cofactor-binding domains.
Q91688241	EpiAlign: an alignment-based bioinformatic tool for comparing chromatin state sequences
Q36465858	Epigenetics in the human brain
Q28822525	Epigraph: A Vaccine Design Tool Applied to an HIV Therapeutic Vaccine and a Pan-Filovirus Vaccine
Q36683474	Epitope identification by polyclonal antibody from phage-displayed random peptide library
Q55313266	Error correcting optical mapping data.
Q21284378	Error statistics of hidden Markov model and hidden Boltzmann model results
Q37887189	Escherichia coli and other species of the Enterobacteriaceae encode a protein similar to the family of Mip-like FK506-binding proteins
Q42151459	Essential notes regarding the design of functional siRNAs for efficient mammalian RNAi
Q33903990	Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence
Q31123818	Estimation of Gene Insertion/Deletion Rates with Missing Data
Q34128292	Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts
Q41964107	Ethanol utilization regulatory protein: profile alignments give no evidence of origin through aldehyde and alcohol dehydrogenase gene fusion
Q92128395	Evaluating global and local sequence alignment methods for comparing patient medical records
Q31896663	Evaluating low level sequence identities. Are Aspergillus QUTA and AROM homologous?
Q33855340	Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.
Q34628374	Evaluation and integration of existing methods for computational prediction of allergens
Q50233388	Evaluation of Bioinformatics Approaches for Next-Generation Sequencing Analysis of microRNAs with a Toxicogenomics Study Design.
Q42847394	Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments.
Q93084519	Evaluation of Trace Alignment Quality and its Application in Medical Process Mining
Q33400850	Evaluation of a microarray-hybridization based method applicable for discovery of single nucleotide polymorphisms (SNPs) in the Pseudomonas aeruginosa genome
Q24812829	Evidence of a large-scale functional organization of mammalian chromosomes
Q97542083	EvoLSTM: context-dependent models of sequence evolution using a sequence-to-sequence LSTM
Q33358528	Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores
Q30873629	Evolution of domain families
Q42676531	Evolution of lambdoid replication modules.
Q42047251	Evolution of proteins and proteomes: a phylogenetics approach.
Q34260504	Evolution of the human sarcomeric-actin genes: evidence for units of selection within the 3' untranslated regions of the mRNAs
Q73578216	Evolution of transcription-regulating proteins: caveat lector!
Q30370011	Evolution, energy landscapes and the paradoxes of protein folding.
Q28601043	Evolutionary Relationships among Extinct and Extant Sloths: The Evidence of Mitogenomes and Retroviruses
Q50057991	Evolutionary analysis of nucleosome positioning sequences based on New Symmetric Relative Entropy.
Q34750448	Evolutionary approach to predicting the binding site residues of a protein from its primary sequence
Q33341539	Evolutionary conservation of DNA-contact residues in DNA-binding domains
Q21184123	Evolutionary conservation of sequence and secondary structures in CRISPR repeats
Q48291005	Evolutionary dynamics of mammalian mRNA untranslated regions by comparative analysis of orthologous human, artiodactyl and rodent gene pairs.
Q35361741	Evolutionary patterns of recently emerged animal duplogs
Q34167912	Evolutionary relationship and secondary structure predictions in four transport proteins of Saccharomyces cerevisiae
Q39403134	Evolving serodiagnostics by rationally designed peptide arrays: the Burkholderia paradigm in Cystic Fibrosis
Q27349389	Exact asymptotic results for the Bernoulli matching model of sequence alignment
Q41361957	Exact correspondence between walk in nucleotide and protein sequence spaces
Q47961009	Exhaustive enumeration of protein domain families
Q24792310	Exonuclease activity and P nucleotide addition in the generation of the expressed immunoglobulin repertoire
Q34569304	Expanding yeast knowledge online
Q30356461	Expansion of protein domain repeats
Q37535791	Experience of targeted Usher exome sequencing as a clinical test.
Q33525006	Experimental evolution of a plant pathogen into a legume symbiont
Q57518624	Experimenting an approximation algorithm for the LCS
Q34247725	Exploring functionally related enzymes using radially distributed properties of active sites around the reacting points of bound ligands
Q33922849	Exploring general-purpose protein features for distinguishing enzymes and non-enzymes within the twilight zone.
Q24676670	Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA
Q51766505	Exploring the protein landscape in ramachandran space: it's not just psi-phi.
Q33336338	Expressed sequence tags with cDNA termini: previously overlooked resources for gene annotation and transcriptome exploration in Chlamydomonas reinhardtii
Q34243931	Expression and tissue-specific localization of nitrate-responsive miRNAs in roots of maize seedlings.
Q24314251	Expression cloning of a cDNA for human ceramide glucosyltransferase that catalyzes the first glycosylation step of glycosphingolipid synthesis
Q34433280	Expression of REX-1, a gene containing zinc finger motifs, is rapidly reduced by retinoic acid in F9 teratocarcinoma cells
Q24646309	Expression profiling of microRNAs by deep sequencing
Q24804829	Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray
Q51594026	Extension of molecular similarity analysis approach to classification of DNA sequences using DNA descriptors.
Q33740860	Extensive libraries of gene truncation variants generated by in vitro transposition.
Q39270503	Extracellular Linkers Completely Transplant the Voltage Dependence from Kv1.2 Ion Channels to Kv2.1.
Q57010700	Extracting Sequence Motifs and the Phylogenetic Features of SNARE-Dependent Membrane Traffic
Q34627801	Extracting protein alignment models from the sequence database
Q21093653	Extracting scientific articles from a large digital archive: BioStor and the Biodiversity Heritage Library
Q33965557	FAAST: Flow-space Assisted Alignment Search Tool.
Q36008201	FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads
Q51667422	FEAST: Sensitive Local Alignment with Multiple Rates of Evolution
Q37601560	FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking
Q34341623	FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Q38825555	FPGASW: Accelerating Large-Scale Smith-Waterman Sequence Alignment Application with Backtracking on FPGA Linear Systolic Array
Q36281514	Factors limiting the performance of prediction-based fold recognition methods
Q42856249	Failure of analysis of amino acid composition as a probe for sequence similarity in tetanus toxin.
Q51342592	Family fingerprints: a global approach to structural classification.
Q36123513	Family of glycosyl transferases needed for the synthesis of succinoglycan by Rhizobium meliloti.
Q33827047	Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures
Q91826861	Fast and accurate long-read assembly with wtdbg2
Q39881370	Fast and accurate mapping of Complete Genomics reads
Q30393263	Fast and accurate protein substructure searching with simulated annealing and GPUs
Q50531510	Fast and efficient short read mapping based on a succinct hash index.
Q29011988	Fast and sensitive protein alignment using DIAMOND
Q35101177	Fast discovery and visualization of conserved regions in DNA sequences using quasi-alignment.
Q21560848	Fast identification and removal of sequence contamination from genomic and metagenomic datasets
Q35257955	Fast inexact mapping using advanced tree exploration on backward search methods
Q28301372	Fast model-based protein homology detection without alignment
Q30422730	Fast protein structure alignment using Gaussian overlap scoring of backbone peptide fragment similarity
Q92128361	Fast read alignment with incorporation of known genomic variants
Q24608845	Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Q39678688	Filamentous phage active on the gram-positive bacterium Propionibacterium freudenreichii
Q88972857	Finding Homologs in Amino Acid Sequences Using Network BLAST Searches
Q30277099	Finding Protein and Nucleotide Similarities with FASTA.
Q34235118	Finding a needle in the virus metagenome haystack--micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire
Q43138940	Finding common protein interaction patterns across organisms.
Q46187429	Finding homologs in amino acid sequences using network BLAST searches
Q30312628	Finding local structural similarities among families of unrelated protein structures: a generic non-linear alignment algorithm
Q51888007	Finding protein and nucleotide similarities with FASTA.
Q52590560	Finding the molecular scaffold of nuclear receptor inhibitors through high-throughput screening based on proteochemometric modelling.
Q34635992	Finding the most significant common sequence and structure motifs in a set of RNA sequences
Q42957758	Fine-grained annotation and classification of de novo predicted LTR retrotransposons.
Q57466029	Fine-tuning carbapenem resistance by reducing porin permeability of bacteria activated in the selection process of conjugation
Q44430452	Finite-temperature local protein sequence alignment: percolation and free-energy distribution
Q64076860	First Betalain-Producing Bacteria Break the Exclusive Presence of the Pigments in the Plant Kingdom
Q59310845	First Experiences Accelerating Smith-Waterman on Intel’s Knights Landing Processor
Q30969610	Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading
Q31124129	Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments
Q36914442	Force-clamp spectroscopy detects residue co-evolution in enzyme catalysis
Q35786708	Four-hundred million years of conserved synteny of human Xp and Xq genes on three Tetraodon chromosomes
Q34253645	Fractal MapReduce decomposition of sequence alignment
Q35547640	Francisella tularensis Subtype A.II Genomic Plasticity in Comparison with Subtype A.I.
Q30403868	Free energies for coarse-grained proteins by integrating multibody statistical contact potentials with entropies from elastic network models.
Q44952236	Free left arms as precursor molecules in the evolution of Alu sequences
Q33305008	From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism
Q37735364	From local structure to a global framework: recognition of protein folds.
Q30397310	Functional analysis of VopF activity required for colonization in Vibrio cholerae.
Q60238064	Functional and informatics analysis enables glycosyltransferase activity prediction
Q39801506	Functional characterization of pediocin PA-1 binding to liposomes in the absence of a protein receptor and its relationship to a predicted tertiary structure
Q28145529	Functional expression of a multisubstrate deoxyribonucleoside kinase from Drosophila melanogaster and its C-terminal deletion mutants
Q35936438	Functional genomics to new drug targets
Q33295216	Functional representation of enzymes by specific peptides
Q40415194	Functional versatility and molecular diversity of the metabolic map of Escherichia coli.
Q34579924	Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera
Q42628161	Fusing multiple protein-protein similarity networks to effectively predict lncRNA-protein interactions
Q33679022	G protein-coupled receptor genes in the FANTOM2 database
Q35791586	GAGE: A critical evaluation of genome assemblies and assembly algorithms
Q33912507	GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda
Q24817213	GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures
Q24634372	GASSST: global alignment short sequence search tool
Q24795163	GATA: a graphic alignment tool for comparative sequence analysis
Q35555475	GDAP: a web tool for genome-wide protein disulfide bond prediction
Q33237755	GENOMEMASKER package for designing unique genomic PCR primers
Q50643791	GGIP: Structure and sequence-based GPCR-GPCR interaction pair predictor.
Q28730122	GHOSTM: a GPU-accelerated homology search tool for metagenomics
Q27934349	GIT1, a gene encoding a novel transporter for glycerophosphoinositol in Saccharomyces cerevisiae
Q30499998	GO4genome: a prokaryotic phylogeny based on genome organization
Q38384488	GOAPhAR: An Integrative Discovery Tool for Annotation, Pathway Analysis
Q36092360	GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering
Q24602060	GPU-BLAST: using graphics processors to accelerate protein sequence alignment
Q33632450	GPU-BSM: a GPU-based tool to map bisulfite-treated reads
Q40192392	GPU-based cloud service for Smith-Waterman algorithm using frequency distance filtration scheme
Q30358085	GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity.
Q92545302	GRASP2: fast and memory-efficient gene-centric assembly and homolog search for metagenomic sequencing data
Q33196267	GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences
Q34457179	GapFiller: a de novo assembly approach to fill the gap within paired reads
Q24545170	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Q47107225	Gastrointestinal distribution of chicken gastrin-cholecystokinin family transcript expression and response to short-term nutritive state
Q38748523	GateKeeper: A New Hardware Architecture for Accelerating Pre-Alignment in DNA Short Read Mapping
Q45961548	Gaussian interaction profile kernels for predicting drug-target interaction.
Q28601709	GenFamClust: an accurate, synteny-aware and reliable homology inference algorithm
Q38387443	Gene Ontology-based semantic alignment of biological pathways by evolutionary search.
Q33596011	Gene and alternative splicing annotation with AIR.
Q52323754	Gene duplications in H. influenzae.
Q41838501	Gene expression patterns and catalytic properties of UDP-D-glucose 4-epimerases from barley (Hordeum vulgare L.).
Q24806190	Gene fusions and gene duplications: relevance to genomic annotation and functional analysis
Q64061955	Gene markers for exon capture and phylogenomics in ray-finned fishes
Q33262333	Gene transcript and metabolite profiling of elicitor-induced opium poppy cell cultures reveals the coordinate regulation of primary and secondary metabolism
Q44799066	Generating a genome assembly with PCAP.
Q24624999	Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning
Q46074377	Genes for adaptation and learning spanning evolution: computational comparison between synaptic transmission and chemo-tactic signaling protein networks.
Q48074518	Genetic and molecular characterization of a gene encoding a wide specificity purine permease of Aspergillus nidulans reveals a novel family of transporters conserved in prokaryotes and eukaryotes
Q42609041	Genetic capsid modifications allow efficient re-targeting of adeno-associated virus type 2.
Q35611381	Genetic definition of the translational operator of the threonine-tRNA ligase gene in Escherichia coli
Q28258216	Genetic variation at hair length candidate genes in elephants and the extinct woolly mammoth
Q25255306	Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
Q38274659	Genome ARTIST: a robust, high-accuracy aligner tool for mapping transposon insertions and self-insertions
Q88973765	Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
Q56888590	Genome Detective: An Automated System for Virus Identification from High-throughput sequencing data
Q30796510	Genome alignment with graph data structures: a comparison
Q22066389	Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"
Q34453217	Genome analysis with gene-indexing databases
Q52326042	Genome and transcriptome of the natural isopropanol producer Clostridium beijerinckii DSM6423.
Q41598213	Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome
Q24814530	Genome comparison without alignment using shortest unique substrings
Q56918442	Genome evolution
Q22065464	Genome of the Bacterium Streptococcus pneumoniae Strain R6
Q29617415	Genome phylogeny based on gene content
Q24537612	Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments
Q22122109	Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis
Q21090181	Genome sequence of the pea aphid Acyrthosiphon pisum
Q34565901	Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.
Q37162588	Genome-Wide Comparative Analyses Reveal the Dynamic Evolution of Nucleotide-Binding Leucine-Rich Repeat Gene Family among Solanaceae Plants
Q39084448	Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum
Q34190846	Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing
Q37504912	Genome-wide analysis of promoters: clustering by alignment and analysis of regular patterns
Q28675202	Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections
Q92905141	Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication
Q29618541	Genome-wide detection of alternative splicing in expressed sequences of human genes
Q45862487	Genome-wide high-throughput integrome analyses by nrLAM-PCR and next-generation sequencing
Q57179183	Genome-wide identification, expression profiling, and target gene analysis of microRNAs in the Onion thrips, Lindeman (Thysanoptera: Thripidae), vectors of tospoviruses (Bunyaviridae)
Q46213876	Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato.
Q33864331	Genome-wide in silico screen for CCCH-type zinc finger proteins of Trypanosoma brucei, Trypanosoma cruzi and Leishmania major
Q34991239	Genome-wide mapping of gene-microbiota interactions in susceptibility to autoimmune skin blistering
Q34425629	Genome-wide metabolic (re-) annotation of Kluyveromyces lactis
Q35275401	Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis
Q35780803	Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor
Q93111839	Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid production
Q34110429	Genome-wide signatures of 'rearrangement hotspots' within segmental duplications in humans
Q30475612	Genome-wide synteny through highly sensitive sequence alignment: Satsuma
Q33490850	Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae)
Q30350256	Genomic characterization of non-O1, non-O139 Vibrio cholerae reveals genes for a type III secretion system.
Q41910269	Genomic clusters, putative pathogen recognition molecules, and antimicrobial genes are induced by infection of C. elegans with M. nematophilum
Q31848368	Genomic exploration of the hemiascomycetous yeasts: 2. Data generation and processing
Q24528258	Genomic organization and chromosomal localization of the mouse synexin gene
Q33751124	Genomic profile analysis of diffuse-type gastric cancers
Q33208489	Genomic profiling by DNA amplification of laser capture microdissected tissues and array CGH
Q28762940	Genomic resources for songbird research and their use in characterizing gene expression during brain development
Q35417828	Genomic signal processing methods for computation of alignment-free distances from DNA sequences
Q24310420	Genomic structure and expression of the human gene encoding cytochrome b561, an integral protein of the chromaffin granule membrane
Q33538613	Genomics and computational molecular biology
Q64910261	Genomics and data science: an application within an umbrella.
Q35030976	Genomics-based identification of self-ligands with T cell receptor-specific biological activity
Q33429253	Geometric aspects of biological sequence comparison
Q34563343	Getting the most from PSI-BLAST.
Q30193211	Gibbs motif sampling: detection of bacterial outer membrane protein repeats
Q29615737	GlobPlot: Exploring protein sequences for globularity and disorder
Q38371710	Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species
Q45675710	GrailEXP and Genome Analysis Pipeline for genome annotation
Q35711354	Grand challenges in bioinformatics and computational biology
Q92257983	Graph Theory-Based Sequence Descriptors as Remote Homology Predictors
Q40354550	Graph-based optimization of epitope coverage for vaccine antigen design
Q37875423	Graphical representation and mathematical characterization of protein sequences and applications to viral proteins
Q38893459	Graphics processing units in bioinformatics, computational biology and systems biology.
Q89763093	Guidelines for Sanger sequencing and molecular assay monitoring
Q37202603	Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes
Q47135566	H2AX facilitates classical non-homologous end joining at the expense of limited nucleotide loss at repair junctions
Q28743596	H3N2 influenza infection elicits more cross-reactive and less clonally expanded anti-hemagglutinin antibodies than influenza vaccination
Q42368142	HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing
Q47148064	HISEA: HIerarchical SEed Aligner for PacBio data
Q35728947	HIV-1 VACCINES. Diversion of HIV-1 vaccine-induced immunity by gp41-microbiota cross-reactive antibodies
Q52060186	HIV-1 and HIV-2 LTR nucleotide sequences: assessment of the alignment by N-block presentation, "retroviral signatures" of overrepeated oligonucleotides, and a probable important role of scrambled stepwise duplications/deletions in molecular evolutio
Q42270590	HIV-1 gp120 vaccine induces affinity maturation in both new and persistent antibody clonal lineages
Q50062934	HIV-TRACE (Transmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens.
Q21559461	HIVE-hexagon: high-performance, parallelized sequence alignment for next-generation sequencing data analysis
Q71458358	HLA-DR4-restricted T-cell epitopes from the mycobacterial 60,000 MW heat shock protein (hsp 60) do not map to the sequence homology regions with the human hsp 60
Q58648084	Hardware Accelerated Sequence Alignment with Traceback
Q24806148	Having a BLAST with bioinformatics (and avoiding BLASTphemy).
Q33264762	HepSEQ: International Public Health Repository for Hepatitis B.
Q52652268	Heterodimer Binding Scaffolds Recognition via the Analysis of Kinetically Hot Residues.
Q33675296	Heterogeneous molecular processes among the causes of how sequence similarity scores can fail to recapitulate phylogeny
Q30362502	Heterogeneous preferential solvation of water and trifluoroethanol in homologous lysozymes.
Q34562884	HeurAA: accurate and fast detection of genetic variations with a novel heuristic amplicon aligner program for next generation sequencing
Q41614869	HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment
Q51188639	Hidden Markov Models for Protein Domain Homology Identification and Analysis.
Q25256829	Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes
Q58689336	High Performance Biological Pairwise Sequence Alignment: FPGA versus GPU versus Cell BE versus GPP
Q34778482	High affinity YY1 binding motifs: identification of two core types (ACAT and CCAT) and distribution of potential binding sites within the human beta globin cluster
Q33356613	High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies
Q36059298	High-resolution analysis of the human T-cell receptor repertoire
Q46944085	High-throughput SNP discovery in the rabbit (Oryctolagus cuniculus) genome by next-generation semiconductor-based sequencing
Q49187352	High-throughput immune repertoire analysis with IGoR.
Q24617968	High-throughput variation detection and genotyping using microarrays
Q43061995	High-yield production, refolding and a molecular modelling of the catalytic module of (1,3)-beta-D-glucan (curdlan) synthase from Agrobacterium sp.
Q33992158	Highly divergent mitochondrial ATP synthase complexes in Tetrahymena thermophila
Q30564472	Highly improved homopolymer aware nucleotide-protein alignments with 454 data
Q52023593	Highly specific gene silencing by artificial microRNAs in Arabidopsis.
Q33528219	Hit integration for identifying optimal spaced seeds
Q51297716	HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens.
Q33523236	Homologous over-extension: a challenge for iterative similarity searches
Q24806775	Homology induction: the use of machine learning to improve sequence similarity searches
Q34169791	Homology modeling of cephalopod lens S-crystallin: a natural mutant of sigma-class glutathione transferase with diminished endogenous activity
Q35907859	Homology modeling of larger proteins guided by chemical shifts
Q24674821	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
Q33233710	Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment
Q34081955	Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses
Q36420301	Host pathogen protein interactions predicted by comparative modeling
Q42282191	HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
Q57242276	How Much Does It Cost?
Q30368057	How reliably can we predict the reliability of protein structure predictions?
Q31934081	How representative are the known structures of the proteins in a complete genome? A comprehensive structural census
Q30372425	How well can the accuracy of comparative protein structure models be predicted?
Q24646441	Human CD3-epsilon gene contains three miniexons and is transcribed from a non-TATA promoter
Q47776997	Human Genome Sequencing at the Population Scale: A Primer on High-Throughput DNA Sequencing and Analysis.
Q30651515	Human and mouse gene structure: comparative analysis and application to exon prediction
Q33813029	Human dopamine beta-hydroxylase (DBH) regulatory polymorphism that influences enzymatic activity, autonomic function, and blood pressure
Q37001062	Human dopamine β-hydroxylase promoter variant alters transcription in chromaffin cells, enzyme secretion, and blood pressure
Q42757819	Human platelet-derived endothelial cell growth factor is homologous to Escherichia coli thymidine phosphorylase
Q28609238	Human proton/oligopeptide transporter (POT) genes: identification of putative human genes using bioinformatics
Q40725769	Human secretory signal peptide description by hidden Markov model and generation of a strong artificial signal peptide for secreted protein expression
Q90929751	Human short tandem repeat identification using a nanopore-based DNA sequencer: a pilot study
Q58689272	HwPMI: An Extensible Performance Monitoring Infrastructure for Improving Hardware Design and Productivity on FPGAs
Q57339080	Hybrid Books for Interactive Digital Storytelling: Connecting Story Entities and Emotions to Smart Environments
Q45880918	Hybridization relatedness of Israeli and U.S. bluetongue (BLU) serotypes using cDNA probes from BLU virus strain 11-UC8
Q30951575	HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features
Q21284202	I-TASSER server for protein 3D structure prediction
Q92282977	IILLS: predicting virus-receptor interactions based on similarity and semi-supervised learning
Q24646236	IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis
Q61443849	IMOS: improved Meta-aligner and Minimap2 On Spark
Q28775742	Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome
Q27939579	Identification and characterization of Saccharomyces cerevisiae yapsin 3, a new member of the yapsin family of aspartic proteases encoded by the YPS3 gene
Q44957967	Identification and characterization of a UDP-D-glucuronate 4-epimerase in Arabidopsis.
Q38506421	Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum).
Q28198309	Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome☆
Q40934760	Identification and functional analysis of 2-hydroxyflavanone C-glucosyltransferase in soybean (Glycine max).
Q48086144	Identification and molecular characterization of a major ring-forming surface protein from the gastric pathogen Helicobacter mustelae
Q28660726	Identification and validation of potential conserved microRNAs and their targets in peach (Prunus persica)
Q50757899	Identification of GPI anchor attachment signals by a Kohonen self-organizing map.
Q35072592	Identification of Navβ1 residues involved in the modulation of the sodium channel Nav1.4.
Q35846535	Identification of ORD, a Drosophila protein essential for sister chromatid cohesion
Q52595198	Identification of Plasmid-Encoded sRNAs in a blaNDM-1-Harboring Multidrug-Resistance Plasmid pNDM-HK in Enterobacteriaceae.
Q58698991	Identification of Prophages and Prophage Remnants within the Genome ofAvibacterium paragallinarumBacterium
Q36683867	Identification of a cDNA that encodes a 1-acyl-sn-glycerol-3-phosphate acyltransferase from Limnanthes douglasii
Q43254865	Identification of a meningococcal L-glutamate ABC transporter operon essential for growth in low-sodium environments.
Q33191655	Identification of a second insulin-like growth factor in a fish species
Q24642250	Identification of a thiamin-dependent synthase in Escherichia coli required for the formation of the 1-deoxy-D-xylulose 5-phosphate precursor to isoprenoids, thiamin, and pyridoxol
Q43597906	Identification of active site residues in glucosylceramide synthase. A nucleotide-binding catalytic motif conserved with processive beta-glycosyltransferases
Q41649769	Identification of conserved residues in family of esterase and lipase sequences.
Q38619515	Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system
Q33929648	Identification of novel soybean microRNAs involved in abiotic and biotic stresses.
Q29617233	Identification of protein coding regions by database similarity search
Q37077369	Identification of protein-coding sequences using the hybridization of 18S rRNA and mRNA during translation
Q36640313	Identification of related proteins with weak sequence identity using secondary structure information
Q30159151	Identification of sequence pattern with profile analysis
Q28681515	Identification of stress-responsive genes in Ammopiptanthus mongolicus using ESTs generated from cold- and drought-stressed seedlings
Q33264886	Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings
Q71821463	Identification of the amino acid subsets accounting for the ligand binding specificity of a glutamate receptor
Q48082871	Identification of the last unknown genes in the fermentation pathway of lysine
Q39976682	Identification of the type I trimethoprim-resistant dihydrofolate reductase specified by the Escherichia coli R-plasmid R483: comparison with procaryotic and eucaryotic dihydrofolate reductases.
Q92087604	Identifying GPCR-drug interaction based on wordbook learning from sequences
Q44439523	Identifying consensus patterns and secondary structure in SELEX sequence sets
Q28145327	Identifying nature's protein Lego set
Q24607407	Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts
Q36283789	Identifying remote protein homologs by network propagation
Q59322059	If you want to know about a hunter, study his prey: detection of network based attacks on KVM based cloud environments
Q37140155	Image analysis of endosocopic ultrasonography in submucosal tumor using fuzzy inference
Q34325939	Image correlation method for DNA sequence alignment
Q61797363	ImmunoSPdb: an archive of immunosuppressive peptides
Q35377918	Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia
Q89542206	Immunoinformatics-aided identification of T cell and B cell epitopes in the surface glycoprotein of 2019-nCoV
Q30385970	Impact of structure space continuity on protein fold classification
Q33331006	Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Q38269045	Improved detection of homologous membrane proteins by inclusion of information from topology predictions.
Q21284289	Improved hit criteria for DNA local alignment
Q35916396	Improved prediction of drug-target interactions using regularized least squares integrating with kernel fusion technique
Q24652199	Improved tools for biological sequence comparison
Q33713232	Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA.
Q41670546	Improvement of phylogenetic method to analyze compositional heterogeneity
Q33963633	Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters
Q38472907	Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty
Q57241810	Improving Parallel Processing of Matrix-Based Similarity Measures on Modern GPUs
Q57782984	Improving Performance on Data-Intensive Applications Using a Load Balancing Methodology Based on Divisible Load Theory
Q36614015	Improving compound-protein interaction prediction by building up highly credible negative samples
Q48874223	Improving heterologous production of phenylpropanoids in Saccharomyces cerevisiae by tackling an unwanted side reaction of Tsc13, an endogenous double-bond reductase.
Q24632911	Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates
Q35960278	Improving the Mapping of Smith-Waterman Sequence Database Searches onto CUDA-Enabled GPUs
Q29614394	Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
Q24672075	Improving the quality of twilight-zone alignments
Q34340383	In Arabidopsis thaliana codon volatility scores reflect GC3 composition rather than selective pressure
Q27468929	In Silico Design and Experimental Validation of siRNAs Targeting Conserved Regions of Multiple Hepatitis C Virus Genotypes
Q38270100	In search for more accurate alignments in the twilight zone
Q31032352	In search of functional association from time-series microarray data based on the change trend and level of gene expression.
Q50756543	In silico analyses of COMT, an important signaling cascade of dopaminergic neurotransmission pathway, for drug development of Parkinson's disease.
Q34599613	In silico approaches to mechanistic and predictive toxicology: an introduction to bioinformatics for toxicologists
Q24622418	In silico cloning of novel endothelial-specific genes
Q36707454	In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species
Q37270732	In silico ionomics segregates parasitic from free-living eukaryotes
Q34781544	In silico pattern-based analysis of the human cytomegalovirus genome
Q24599377	In vitro selection of clinically relevant bevirimat resistance mutations revealed by "deep" sequencing of serially passaged, quasispecies-containing recombinant HIV-1
Q34249493	In vivo generation of DNA sequence diversity for cellular barcoding
Q38705367	In vivo genome editing and organoid transplantation models of colorectal cancer and metastasis
Q41765881	Including biological literature improves homology search
Q51904622	Incorporating evolution of transcription factor binding sites into annotated alignments.
Q45998545	Incorporating homologues into sequence embeddings for protein analysis.
Q30400311	Incorporation of local structural preference potential improves fold recognition
Q38575045	Indefinite Proximity Learning: A Review
Q41789505	Inexact Local Alignment Search over Suffix Arrays
Q37415423	Inexact Matching of Ontology Graphs Using Expectation-Maximization
Q28829729	Inferences of drug responses in cancer cells from cancer genomic features and compound chemical and therapeutic properties
Q39146448	Inferring Function from Homology
Q40739133	Informatics issues in large-scale sequence analysis: elucidating the protein kinases of C. elegans
Q40959465	Information services of the European Bioinformatics Institute
Q35441583	Initial antibodies binding to HIV-1 gp41 in acutely infected subjects are polyreactive and highly mutated
Q21045365	Initial sequencing and analysis of the human genome
Q33613896	Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
Q91247857	Installing, Maintaining, and Using a Local Copy of BLAST for Compute Cluster or Workstation Use
Q30333056	Integrated databanks access and sequence/structure analysis services at the PBIL.
Q89983086	Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals
Q40780293	Integrating Sequence Evolution into Probabilistic Orthology Analysis
Q38002396	Integrating genomes
Q30781978	Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies
Q31078360	Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?
Q36756559	Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria
Q75160280	Interaction Network Analysis Using Semantic Similarity Based on Translation Embeddings
Q37577553	Internal duplication in human alpha 1 and beta 1 interferons
Q35147444	Interpretive proteomics--finding biological meaning in genome and proteome databases
Q33370422	Interspecies data mining to predict novel ING-protein interactions in human
Q35146628	Intrinsic disorder in the BK channel and its interactome
Q52674247	Introducing difference recurrence relations for faster semi-global alignment of long sequences.
Q31024653	Investigating bisulfite short-read mapping failure with hairpin bisulfite sequencing data.
Q24803534	Investigating hookworm genomes by comparative analysis of two Ancylostoma species
Q39932711	Involvement of the galactosyl-1-phosphate transferase encoded by the Salmonella enterica rfbP gene in O-antigen subunit processing
Q33432323	Island method for estimating the statistical significance of profile-profile alignment scores
Q28552164	Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering
Q58361896	Isolation and Identification of Sulphite- and Iron Reducing, Hydrogenase Positive Facultative Anaerobes from Cooling Water Systems
Q67852091	Isolation and amino acid sequence of crustacean hyperglycemic hormone precursor-related peptides
Q36725465	Isolation and characterisation of a maize cDNA that complements a 1-acyl sn-glycerol-3-phosphate acyltransferase mutant of Escherichia coli and encodes a protein which has similarities to other acyltransferases
Q33406386	Isolation and identification of two novel SDS-resistant secreted chitinases from Aeromonas schubertii
Q37502213	Isolation and molecular characterization of a major hemolymph serpin from the triatomine, Panstrongylus megistus
Q34841347	Isolation and mutagenesis of a capsule-like complex (CLC) from Francisella tularensis, and contribution of the CLC to F. tularensis virulence in mice
Q24597021	Isolation of a cDNA encoding human 40S ribosomal protein s3
Q48095136	Isolation, characterization and sequence of a cDNA encoding gamma-tubulin protein from the fern Anemia phyllitidis L. Sw.
Q30421088	Issues in searching molecular sequence databases
Q29618634	Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases
Q52209520	Iterated sequence databank search methods.
Q62672148	Iterative Probabilistic Tree Search for the Minimum Common String Partition Problem
Q28131661	Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard
Q52319063	Iterative template refinement: protein-fold prediction using iterative search and hybrid sequence/structure templates.
Q24813040	JACOP: a simple and robust method for the automated classification of protein sequences with modular architecture.
Q30924146	JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes
Q47239456	K2 and K*2: Efficient alignment-free sequence similarity measurement based on Kendall statistics.
Q29617232	KAAS: an automatic genome annotation and pathway reconstruction server
Q113307273	KALMUS: tools for color analysis of films
Q41011185	KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains
Q38460563	KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters
Q25255688	Kalign--an accurate and fast multiple sequence alignment algorithm
Q41992348	Keap1 loss promotes Kras-driven lung cancer and results in dependence on glutaminolysis.
Q38671499	Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes
Q28315523	Knowledge-Based Protein Modeling
Q28775786	LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
Q28246715	Lambda: the local aligner for massive biological data
Q33628004	Large direct repeats flank genomic rearrangements between a new clinical isolate of Francisella tularensis subsp. tularensis A1 and Schu S4.
Q34791350	Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori.
Q24798423	Large scale hierarchical clustering of protein sequences
Q50542023	Large-Scale Sequence Comparison.
Q46972510	Large-scale comparison of protein sequence alignment algorithms with structure alignments
Q48961392	Learning about addiction from the genome.
Q90303776	Learning supervised embeddings for large scale sequence comparisons
Q55514107	Learning with multiple pairwise kernels for drug bioactivity prediction.
Q92886460	Leveraging Image-Derived Phenotypic Measurements for Drug-Target Interaction Predictions
Q100712259	Librispeech: An ASR corpus based on public domain audio books
Q36356063	Lineage-specific expression of a T cell receptor variable gene promoter controlled by upstream sequences
Q74615900	Linear programming optimization and a double statistical filter for protein threading protocols
Q28757549	LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
Q80428000	Linkage disequilibrium and sequence diversity in a 500-kbp region around the adh1 locus in elite maize germplasm
Q31069236	Linking publication, gene and protein data
Q37181145	Local RNA structure alignment with incomplete sequence
Q33615417	Local alignment of generalized k-base encoded DNA sequence
Q33464728	Local alignment of two-base encoded DNA sequence
Q36811813	Local alignment statistics
Q34583898	Local alignment tool for clinical history: temporal semantic search of clinical databases
Q42083243	Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
Q28480611	Local structural differences in homologous proteins: specificities in different SCOP classes
Q52035893	Local weighting schemes for protein multiple sequence alignment.
Q37369817	Location of the active site for enzyme-adenylate formation in DNA ligases
Q35055258	Log-odds sequence logos
Q36453490	Long Read Alignment with Parallel MapReduce Cloud Platform
Q28274745	Long read alignment based on maximal exact match seeds
Q92341579	Long walk to genomics: History and current approaches to genome sequencing and assembly
Q24671919	Long-range heterogeneity at the 3' ends of human mRNAs
Q57168324	Long-read sequencing across the C9orf72 'GGGGCC' repeat expansion: implications for clinical use and genetic discovery efforts in human disease
Q35082625	Low-bandwidth and non-compute intensive remote identification of microbes from raw sequencing reads
Q22065317	Low-pass sequencing for microbial comparative genomics
Q64965456	LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo.
Q33193084	LumenP—A neural network predictor for protein localization in the thylakoid lumen
Q42645671	MACHOS: Markov clusters of homologous subsequences
Q28334425	MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons
Q24540347	MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
Q36249827	MARS: improving multiple circular sequence alignment using refined sequences
Q30856995	MBA: a literature mining system for extracting biomedical abbreviations
Q24811533	MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution
Q64120900	MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons
Q35545836	MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups
Q35159357	MBGD: microbial genome database for comparative analysis
Q35142003	MC64-ClustalWP2: a highly-parallel hybrid strategy to align multiple sequences in many-core architectures
Q33246179	MCALIGN2: faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Q35581043	MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).
Q55129477	MODBASE, a database of annotated comparative protein structure models and associated resources.
Q31153287	MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping
Q35179413	MP-Align: alignment of metabolic pathways
Q33528190	MTar: a computational microRNA target prediction architecture for human transcriptome
Q33255503	MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information
Q48159072	MUMmer4: A fast and versatile genome alignment system
Q24646301	MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information
Q25257010	MaGe: a microbial genome annotation system supported by synteny results
Q28751419	Machine learning for in silico virtual screening and chemical genomics: new strategies
Q47624148	Making family trees from gene families
Q33863069	Mapping biological entities using the longest approximately common prefix method
Q47604098	Mapping protein pockets through their potential small-molecule binding volumes: QSCD applied to biological protein structures
Q24644612	Mapping short DNA sequencing reads and calling variants using mapping quality scores
Q34417601	Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
Q47304528	Mapping-free variant calling using haplotype reconstruction from k-mer frequencies
Q36860756	Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains
Q28478338	Markov models of amino acid substitution to study proteins with intrinsically disordered regions
Q35376368	Massive fungal biodiversity data re-annotation with multi-level clustering
Q28343405	Massive sequence comparisons as a help in annotating genomic sequences
Q41123338	Mast cell tryptases: examination of unusual characteristics by multiple sequence alignment and molecular modeling
Q28554828	Mathematical Characterization of Protein Sequences Using Patterns as Chemical Group Combinations of Amino Acids
Q51888011	Mathematically complete nucleotide and protein sequence searching using Ssearch.
Q37165997	Mathematics and evolutionary biology make bioinformatics education comprehensible
Q28652427	MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence
Q51574990	Maximizing the Adjacent Possible in Automata Chemistries.
Q47687649	Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores
Q34100597	MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature
Q41383070	Measurement of word frequencies in genomic DNA sequences based on partial alignment and fuzzy set.
Q30853974	Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis
Q28776160	Measuring genome evolution
Q33332599	Measuring global credibility with application to local sequence alignment.
Q47097269	Mechanisms of Surface Antigenic Variation in the Human Pathogenic Fungus Pneumocystis jirovecii
Q40472927	Mechanistic insights aid computational short interfering RNA design.
Q24812142	Medical record linkage in health information systems by approximate string matching and clustering.
Q38338321	Members of a new group of chitinase-like genes are expressed preferentially in cotton cells with secondary walls
Q42123433	Membrane protein stability analyses by means of protein energy profiles in case of nephrogenic diabetes insipidus
Q40920152	Membrane-bound transferrin-like protein (MTf): structure, evolution and selective expression during chondrogenic differentiation of mouse embryonic cells
Q37041315	Mercury BLASTP: Accelerating Protein Sequence Alignment
Q36129335	MetaPathways v2.5: quantitative functional, taxonomic and usability improvements
Q41947344	Metagenome fragment classification using N-mer frequency profiles
Q36554944	Metagenomic Classification Using an Abstraction Augmented Markov Model
Q57013883	Methodological aspects and potential of computer‐aided protein engineering
Q33299035	MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans
Q24806738	MicroRNA targets in Drosophila
Q43028261	Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis
Q35535880	Microcomputer programs for graphic analysis of nucleic acid and protein sequences
Q28775887	Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome
Q33906802	Mind the gaps: progress in progressive alignment
Q91989652	Mining clinical big data for drug safety: Detecting inadequate treatment with a DNA sequence alignment algorithm
Q36560481	Mitochondria, hydrogenosomes and mitosomes: products of evolutionary tinkering!
Q33418218	Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants
Q30355976	ModBase, a database of annotated comparative protein structure models and associated resources.
Q24613729	ModBase, a database of annotated comparative protein structure models, and associated resources
Q46100316	Modeling DNA base substitution in large genomic regions from two organisms.
Q36443509	Modeling cellular machinery through biological network comparison
Q30428829	Modeling the paramyxovirus hemagglutinin-neuraminidase protein
Q27023873	Modern Computational Techniques for the HMMER Sequence Analysis
Q24798650	Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs
Q40913587	Modular and configurable optimal sequence alignment software: Cola
Q33517965	Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences
Q74431979	Modularity in the gain and loss of genes: applications for function prediction
Q33855704	Modulation of oncogenic potential by alternative gene use in human prostate cancer
Q51595322	Molecular Determinants for the Binding Mode of Alkylphosphocholines in the C2 Domain of PKCα.
Q36059999	Molecular Evolution of the Oxygen-Binding Hemerythrin Domain.
Q51415007	Molecular Methods and Bioinformatic Tools for Adjuvant Characterization by High-Throughput Sequencing.
Q56989569	Molecular Microprograms
Q33959055	Molecular analysis of a Salmonella enterica group E1 rfb gene cluster: O antigen and the genetic basis of the major polymorphism
Q46668199	Molecular analysis of a consortium of ruminal microbes that detoxify pyrrolizidine alkaloids
Q42602843	Molecular analysis of the rfb gene cluster of Salmonella serovar muenchen (strain M67): the genetic basis of the polymorphism between groups C2 and B
Q24307497	Molecular characterization of NDP52, a novel protein of the nuclear domain 10, which is redistributed upon virus infection and interferon treatment
Q33277343	Molecular characterization of sheep ruminal enrichments that detoxify pyrrolizidine alkaloids by denaturing gradient gel electrophoresis and cloning
Q24291479	Molecular cloning and characterization of a dermatan-specific N-acetylgalactosamine 4-O-sulfotransferase
Q40426686	Molecular cloning and nucleotide sequence of the colonization factor antigen I gene of Escherichia coli.
Q40562251	Molecular cloning and nucleotide sequence of the gene for Escherichia coli leucyl-tRNA synthetase
Q36798036	Molecular cloning and tissue distribution of keratocan. Bovine corneal keratan sulfate proteoglycan 37A.
Q33304456	Molecular correlates of host specialization in Staphylococcus aureus
Q32137568	Molecular dynamics simulation in solvent of the estrogen receptor protein DNA binding domain in complex with a non-consensus estrogen response element DNA sequence
Q28769475	Molecular evolution of the small subunit of ribulose bisphosphate carboxylase: nucleotide substitution and gene conversion
Q30589557	Molecular immunology databases and data repositories.
Q36527270	Molecular modeling of family GH16 glycoside hydrolases: potential roles for xyloglucan transglucosylases/hydrolases in cell wall modification in the poaceae
Q34213222	Molecular modeling of the chromatosome particle
Q34224362	Molecular modeling of the membrane targeting of phospholipase C pleckstrin homology domains
Q80477437	Molecular modeling of the von Willebrand factor A2 Domain and the effects of associated type 2A von Willebrand disease mutations
Q33632101	Molecular sequence accuracy and the analysis of protein coding regions
Q92672027	Molecular systematics of Pampus (Perciformes: Stromateidae) based on thousands of nuclear loci using target-gene enrichment
Q90176689	Monoclonal IgM Antibodies Targeting Candida albicans Hyr1 Provide Cross-Kingdom Protection Against Gram-Negative Bacteria
Q33237075	More robust detection of motifs in coexpressed genes by using phylogenetic information.
Q34568096	MosaicFinder: identification of fused gene families in sequence similarity networks
Q34456356	Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes
Q35629746	Motif kernel generated by genetic programming improves remote homology and fold detection
Q30764897	Motif-based fold assignment
Q34040915	Motif-independent prediction of a secondary metabolism gene cluster using comparative genomics: application to sequenced genomes of Aspergillus and ten other filamentous fungal species
Q30771819	Multi-genome alignment for quality control and contamination screening of next-generation sequencing data.
Q34129255	Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks
Q94193275	Multi-task learning with a natural metric for quantitative structure activity relationship learning
Q36805553	Multigene families in African swine fever virus: family 110.
Q27486584	Multigene families in African swine fever virus: family 360
Q59798420	Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine
Q51298282	Multiple Sequence Alignment.
Q34280166	Multiple alignment of complete sequences (MACS) in the post-genomic era.
Q30357667	Multiple alignment of protein sequences with repeats and rearrangements.
Q37236835	Multiple alignment-free sequence comparison
Q33294515	Multiple domain insertions and losses in the evolution of the Rab prenylation complex
Q36279955	Multiple domain protein diagnostic patterns
Q91936970	Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River
Q34593732	Multiple groups of endogenous epsilon-like retroviruses conserved across primates.
Q33241830	Multiple potential regulatory elements in the 5' flanking region of the beta 3-adrenergic receptor.
Q52319058	Multiple protein sequence alignment: algorithms and gap insertion.
Q24675718	Multiple protein structure alignment
Q30371271	Multiple sequence alignment by conformational space annealing
Q33214403	Multiple sequence alignment using an exhaustive and greedy algorithm
Q33720719	Multiple sequence alignment: algorithms and applications
Q48385770	Multiple spaced seeds for homology search.
Q61448088	Multivariate Information Fusion With Fast Kernel Learning to Kernel Ridge Regression in Predicting LncRNA-Protein Interactions
Q33707531	Murasaki: a fast, parallelizable algorithm to find anchors from multiple genomes
Q33833646	NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs
Q28758561	NEMO: Extraction and normalization of organization names from PubMed affiliations
Q33270373	NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition.
Q34546632	NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets.
Q64115433	NRLMF: Beta-distribution-rescored neighborhood regularized logistic matrix factorization for improving the performance of drug-target interaction prediction
Q36411572	Nanopore sequencing data analysis: state of the art, applications and challenges.
Q83229462	Natural selection and repeated patterns of molecular evolution following allopatric divergence
Q30248315	Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing
Q38431594	Near perfect protein multi-label classification with deep neural networks
Q41109972	Near-optimal sequence alignment
Q33229369	NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae
Q35015314	Network genomics--a novel approach for the analysis of biological systems in the post-genomic era.
Q39438556	Network predicting drug's anatomical therapeutic chemical code
Q64099168	Network-based prediction of drug combinations
Q51237043	Neutral evolution of duplicated DNA: an evolutionary stick-breaking process causes scale-invariant behavior.
Q24538985	Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection
Q37349260	New approaches for computer analysis of nucleic acid sequences
Q41420368	New horizons in sequence analysis
Q33520132	New method for global alignment of 2 DNA sequences by the tree data structure
Q38047034	New trends in peptide-based anti-biofilm strategies: a review of recent achievements and bioinformatic approaches.
Q39555056	Next-generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing.
Q34670345	Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms.
Q113307022	Nextclade: clade assignment, mutation calling and quality control for viral genomes
Q57169170	Nimbus: a design-driven analyses suite for amplicon-based NGS data
Q54987807	No pain and gain!—experiences with Mentat on a biological application
Q91765390	Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data
Q32085842	Non-canonical inteins.
Q34334466	Nonrandom survival of gene conversions among yeast ribosomal proteins duplicated through genome doubling
Q37598421	Novel Bioinformatics-Based Approach for Proteomic Biomarkers Prediction of Calpain-2 &Caspase-3 Protease Fragmentation: Application to βII-Spectrin Protein
Q39723818	Novel Modeling of Task vs. Rest Brain State Predictability Using a Dynamic Time Warping Spectrum: Comparisons and Contrasts with Other Standard Measures of Brain Dynamics.
Q34149014	Novel families of interspersed repetitive elements from the human genome
Q42775775	Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach
Q64106792	Novel, rare and common pathogenic variants in the CFTR gene screened by high-throughput sequencing technology and predicted by in silico tools
Q37397795	Nucleic acid sequence of an internal image-bearing monoclonal anti-idiotype and its comparison to the sequence of the external antigen
Q33737061	Nucleosome structure incorporated histone acetylation site prediction in Arabidopsis thaliana
Q58789388	Nucleotide Composition of Human Ig Nontemplated Regions Depends on Trimming of the Flanking Gene Segments, and Terminal Deoxynucleotidyl Transferase Favors Adding Cytosine, Not Guanosine, in Most VDJ Rearrangements
Q68012058	Nucleotide base sequence of the mitochondrial COIII gene of Schizophyllum commune
Q34580389	Nucleotide insertions and deletions complement point mutations to massively expand the diversity created by somatic hypermutation of antibodies
Q36152612	Nucleotide sequence and genetic analysis of the Azotobacter chroococcum nifUSVWZM gene cluster, including a new gene (nifP) which encodes a serine acetyltransferase
Q28776506	Nucleotide sequence of Escherichia coli valyl-tRNA synthetase gene valS
Q42633012	Nucleotide sequence of the genome of a citrus isolate of olive latent virus 1.
Q92999345	OMA standalone: orthology inference among public and custom genomes and transcriptomes
Q37365683	OPUS-Dom: applying the folding-based method VECFOLD to determine protein domain boundaries
Q29306444	OSWALD: OpenCL Smith-Waterman on Alteras FPGA for Large Protein Databases
Q34068817	Objective method for estimating asymptotic parameters, with an application to sequence alignment
Q34475507	Oculus: faster sequence alignment by streaming read compression
Q24575548	OligoDesign: optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profiling
Q38580135	On the history of the connectivity index: from the connectivity index to the exact solution of the protein alignment problem
Q24804874	On the species of origin: diagnosing the source of symbiotic transcripts
Q35533172	On the statistical significance of nucleic acid similarities
Q46082224	On the universe of protein folds
Q37589177	OncomiRdbB: a comprehensive database of microRNAs and their targets in breast cancer
Q38513133	Ontology for genome comparison and genomic rearrangements
Q50053541	Open-source chemogenomic data-driven algorithms for predicting drug-target interactions.
Q30539345	OpenStructure: an integrated software framework for computational structural biology
Q42276756	Optimal choice of word length when comparing two Markov sequences using a χ 2-statistic
Q30371486	Optimal contact map alignment of protein-protein interfaces
Q33393414	Optimal neighborhood indexing for protein similarity search
Q30404338	Optimal pairwise alignment of fixed protein structures in subquadratic time.
Q40320925	Optimal seed solver: optimizing seed selection in read mapping.
Q52111467	Optimal sequence alignment allowing for long gaps.
Q33358812	Optimal spliced alignments of short sequence reads
Q42601395	Optimization of 3D Poisson-Nernst-Planck model for fast evaluation of diverse protein channels
Q52072060	Optimization of a new score function for the detection of remote homologs.
Q42608940	Optimization techniques in molecular structure and function elucidation
Q33242480	Optimizing amino acid substitution matrices with a local alignment kernel
Q24607311	Organization of the gene encoding common acute lymphoblastic leukemia antigen (neutral endopeptidase 24.11): multiple miniexons and separate 5' untranslated regions
Q39615054	Origin and fate of repeats in bacteria
Q24608310	OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011
Q38815377	Ortholog Identification and Comparative Analysis of Microbial Genomes Using MBGD and RECOG.
Q46310708	Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference
Q36361689	Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.
Q37564595	Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays.
Q47236080	Output ordering and prioritisation system (OOPS): ranking biosynthetic gene clusters to enhance bioactive metabolite discovery
Q24535010	Overview of the marine roseobacter lineage
Q33826430	Ovine ruminal microbes are capable of biotransforming hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX).
Q36329464	P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool
Q24812714	PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology
Q92077930	PCR diagnostics: In silico validation by an automated tool using freely available software programs
Q48129760	PCR-dependent amplification and sequence characterization of partial cDNAs encoding myosin-like proteins in Anemia phyllitidis (L.) Sw. and Arabidopsis thaliana (L.) Heynh
Q40042486	PCV: An Alignment Free Method for Finding Homologous Nucleotide Sequences and its Application in Phylogenetic Study
Q42157302	PDBselect 1992-2009 and PDBfilter-select
Q38949214	PEMapper and PECaller provide a simplified approach to whole-genome sequencing
Q28752684	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
Q30365227	PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
Q33247621	PHOG-BLAST--a new generation tool for fast similarity search of protein families
Q33247622	PHOG: a database of supergenomes built from proteome complements
Q36218450	PILOT_PROTEIN: identification of unmodified and modified proteins via high-resolution mass spectrometry and mixed-integer linear optimization.
Q42747257	PIR pairwise alignment - a slip up for signal peptides
Q33957487	PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences
Q24647089	PLAST: parallel local alignment search tool for database comparison
Q58787033	PMLPR: A novel method for predicting subcellular localization based on recommender systems
Q37661752	POGO-DB--a database of pairwise-comparisons of genomes and conserved orthologous genes
Q30611167	PRICE: software for the targeted assembly of components of (Meta) genomic sequence data
Q36252112	PRIMAL: Page Rank-Based Indoor Mapping and Localization Using Gene-Sequenced Unlabeled WLAN Received Signal Strength
Q30377835	PROCAIN server for remote protein sequence similarity search
Q30376066	PROCAIN: protein profile comparison with assisting information.
Q35864154	PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information
Q93092446	PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands
Q33393575	PSI-BLAST pseudocounts and the minimum description length principle.
Q24607086	PSI-Search: iterative HOE-reduced profile SSEARCH searching
Q82907794	PSS-3D1D: an improved 3D1D profile method of protein fold recognition for the annotation of twilight zone sequences
Q34625877	PSimScan: algorithm and utility for fast protein similarity search
Q30390048	PUDGE: a flexible, interactive server for protein structure prediction
Q37373732	Pairwise Sequence Alignment for Very Long Sequences on GPUs
Q64271216	Pairwise alignment of nucleotide sequences using maximal exact matches
Q51944579	Pairwise alignment of protein interaction networks.
Q52035897	Pairwise sequence alignment using a PROSITE pattern-derived similarity score.
Q43150690	Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty
Q37219838	PanGEA: identification of allele specific gene expression using the 454 technology.
Q34515733	Pancreatic polypeptide receptors: affinity, sodium sensitivity and stability of agonist binding
Q35079970	ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches.
Q47106997	Parallel Processing of Biological Sequence Comparison Algorithms
Q36468608	Parallel computation for biological sequence comparison: comparing a portable model to the native model for the Intel Hypercube
Q34173339	Parallel progressive multiple sequence alignment on reconfigurable meshes
Q93551061	Parallelized pairwise sequence alignment using CUDA on multiple GPUs
Q35864873	Parameterizing sequence alignment with an explicit evolutionary model
Q36465103	Parameters of proteome evolution from histograms of amino-acid sequence identities of paralogous proteins
Q37093513	Parametric sequence comparisons
Q42232982	Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure
Q24295197	Partial characterization of the human beta-myosin heavy-chain gene which is expressed in heart and skeletal muscle
Q38602866	Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements
Q33426071	Partitioning clustering algorithms for protein sequence data sets.
Q33752163	Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing
Q37322765	Pash: efficient genome-scale sequence anchoring by Positional Hashing
Q38149685	Pattern recognition and probabilistic measures in alignment-free sequence analysis
Q31158822	Pattern recognition in capillary electrophoresis data using dynamic programming in the wavelet domain
Q28281474	Patternhunter II: highly sensitive and fast homology search
Q98394634	Patterns of DNA variation between the autosomes, the X chromosome and the Y chromosome in Bos taurus genome
Q33649755	Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems
Q34325596	Patterns of evolutionary conservation of essential genes correlate with their compensability
Q30328734	Pcons: a neural-network-based consensus predictor that improves fold recognition.
Q24797621	Pegasys: software for executing and integrating analyses of biological sequences
Q30444431	PepBank--a database of peptides based on sequence text mining and public peptide data sources
Q35152121	Peptide/MHC tetramer-based sorting of CD8⁺ T cells to a leukemia antigen yields clonotypes drawn nonspecifically from an underlying restricted repertoire
Q34144431	Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis
Q60044010	Performance evaluation for MOTIFSIM
Q50110817	Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison.
Q28748879	Periodic explosive expansion of human retroelements associated with the evolution of the hominoid primate
Q30369955	Periplasmic proteins of the extremophile Acidithiobacillus ferrooxidans: a high throughput proteomics analysis.
Q30329413	Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function.
Q27935751	Pex22p of Pichia pastoris, essential for peroxisomal matrix protein import, anchors the ubiquitin-conjugating enzyme, Pex4p, on the peroxisomal membrane
Q36092217	Pharmacophore Alignment Search Tool (PhAST): Significance Assessment of Chemical Similarity
Q34600078	Phase transitions in sequence matches and nucleic acid structure
Q71743235	Photoaffinity labeling of human lysosomal beta-hexosaminidase B. Identification of Glu-355 at the substrate binding site
Q36300080	PhyLAT: a phylogenetic local alignment tool
Q34135908	PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene trees.
Q41613516	Phylo_dCor: distance correlation as a novel metric for phylogenetic profiling
Q45001166	Phylobiochemical characterization of class-Ib aspartate/prephenate aminotransferases reveals evolution of the plant arogenate phenylalanine pathway
Q39099790	Phylogenetic Analysis Using Protein Mass Spectrometry
Q33400327	Phylogenetic and functional assessment of orthologs inference projects and methods
Q52050100	Phylogenetic information improves homology detection.
Q49357708	Phylogenomics of the olive tree (Olea europaea) reveals the relative contribution of ancient allo- and autopolyploidization events.
Q34287990	Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
Q24612855	PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
Q24650404	PhylomeDB: a database for genome-wide collections of gene phylogenies
Q33543348	Physicochemical property distributions for accurate and rapid pairwise protein homology detection
Q48309048	Physiological genomics of Escherichia coli protein families.
Q29616763	Phytozome: a comparative platform for green plant genomics
Q42071702	PicXAA-Web: a web-based platform for non-progressive maximum expected accuracy alignment of multiple biological sequences
Q41891197	PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences
Q30743399	PipeOnline 2.0: automated EST processing and functional data sorting
Q41954486	Piracetam and TRH analogues antagonise inhibition by barbiturates, diazepam, melatonin and galanin of human erythrocyte D-glucose transport.
Q54458056	Plant coenzyme A biosynthesis: characterization of two pantothenate kinases from Arabidopsis.
Q35211039	Plant microRNA-target interaction identification model based on the integration of prediction tools and support vector machine
Q89637204	PlantPepDB: A manually curated plant peptide database
Q34188479	Plasticity of influenza haemagglutinin fusion peptides and their interaction with lipid bilayers
Q50626264	Plastocyanin-ferredoxin oxidoreduction and endosymbiotic gene transfer.
Q42612616	Poisson, compound Poisson and process approximations for testing statistical significance in sequence comparisons
Q40491137	Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
Q93111403	Polymorphic edge detection (PED): two efficient methods of polymorphism detection from next-generation sequencing data
Q24628522	Polymorphism of HLA-DR beta chains in DR4, -7, and -9 haplotypes: implications for the mechanisms of allelic variation
Q88774969	Poor feed efficiency in sheep is associated with several structural abnormalities in the community metabolic network of their ruminal microbes
Q40488040	PopAlu: population-scale detection of Alu polymorphisms
Q30436703	Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster
Q47626238	Position-associated GC asymmetry of gene duplicates
Q43138918	Positional homology in bacterial genomes.
Q30330111	Positioning of anchor groups in protein loop prediction: the importance of solvent accessibility and secondary structure elements.
Q21145263	Possible ancestral structure in human populations
Q93608862	Possible steroid binding site common to adrenal cytochrome P-450scc and prostatic steroid binding protein
Q47336036	Post-termination-induced and hormonally dependent expression of low-molecular-weight heat shock protein genes in Douglas fir.
Q89493310	PostSV: A Post-Processing Approach for Filtering Structural Variations
Q35091094	Potential functions of microRNAs in starch metabolism and development revealed by miRNA transcriptome profiling of cassava cultivars and their wild progenitor
Q36834546	Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution
Q21045412	Pre-calculated protein structure alignments at the RCSB PDB website
Q38654447	Predicting Amino Acid Substitution Probabilities Using Single Nucleotide Polymorphisms
Q33263601	Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores
Q28534336	Predicting Drug-Target Interactions for New Drug Compounds Using a Weighted Nearest Neighbor Profile
Q40349194	Predicting Drug-Target Interactions via Within-Score and Between-Score
Q30356989	Predicting Variation of Folk Songs: A Corpus Analysis Study on the Memorability of Melodies.
Q33802222	Predicting anatomic therapeutic chemical classification codes using tiered learning
Q30366255	Predicting and improving the protein sequence alignment quality by support vector regression.
Q41773200	Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups
Q51406184	Predicting drug targets based on protein domains.
Q40957429	Predicting drug-target interaction for new drugs using enhanced similarity measures and super-target clustering.
Q36247116	Predicting drug-target interactions by dual-network integrated logistic matrix factorization
Q46766552	Predicting drug-target interactions from chemical and genomic kernels using Bayesian matrix factorization.
Q28535368	Predicting drug-target interactions using drug-drug interactions
Q36120296	Predicting existing targets for new drugs base on strategies for missing interactions
Q35113369	Predicting gene function by conserved co-expression
Q33737005	Predicting gene function using few positive examples and unlabeled ones
Q40414366	Predicting protein function by genomic context: quantitative evaluation and qualitative inferences
Q44037721	Predicting redox state of cysteines in proteins.
Q41842333	Predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using short polypeptide clusters
Q31032914	Predicting target proteins for drug candidate compounds based on drug-induced gene expression data in a chemical structure-independent manner
Q35092840	Predicting target-ligand interactions using protein ligand-binding site and ligand substructures
Q35178404	Predicting the fungal CUG codon translation with Bagheera
Q34147600	Predicting the impact of alternative splicing on plant MADS domain protein function
Q39698108	Predicting transcription factor synergism
Q33719953	Prediction and analysis of the modular structure of cytochrome P450 monooxygenases
Q28477742	Prediction of antimicrobial peptides based on sequence alignment and feature selection methods
Q28481329	Prediction of chemical-protein interactions network with weighted network-based inference method
Q24795601	Prediction of co-regulated genes in Bacillus subtilis on the basis of upstream elements conserved across three closely related species
Q36094756	Prediction of compound-target interactions of natural products using large-scale drug and protein information.
Q45952703	Prediction of drug-target interaction by label propagation with mutual interaction information derived from heterogeneous network.
Q37283297	Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.
Q41627739	Prediction of genome-wide DNA methylation in repetitive elements
Q73925982	Prediction of interaction partners for orphan nuclear receptors by prior-based protein sequence profiles
Q28492567	Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa
Q34009456	Prediction of peptide reactivity with human IVIg through a knowledge-based approach.
Q41790835	Prediction of structural features and application to outer membrane protein identification
Q40941083	Prediction of the secondary structure of HIV-1 gp120.
Q37518296	Prefiltering Model for Homology Detection Algorithms on GPU.
Q40494076	Primary structure and genetic organization of phage T4 DNA ligase
Q48369420	Primate eta-globin DNA sequences and man's place among the great apes.
Q34909624	Primer-design for multiplexed genotyping
Q33560243	ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses
Q24557418	ProbCons: Probabilistic consistency-based multiple sequence alignment
Q57379911	Probabilistic sequence alignment of stratigraphic records
Q47809789	Probable epitopes: Relationships between myelin basic protein antigenic determinants and viral and bacterial proteins
Q58585519	Process-oriented Iterative Multiple Alignment for Medical Process Mining
Q41183961	Profile conditional random fields for modeling protein families with structural information
Q48473262	Profile-based direct kernels for remote homology detection and fold recognition.
Q37415666	Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling
Q35000502	Progress in bioinformatics and the importance of being earnest.
Q30359444	Projections for fast protein structure retrieval
Q33406826	Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome
Q40764686	Promoter characteristics of two cyp19 genes differentially expressed in the brain and ovary of teleost fish
Q71514801	Protamines of reptiles
Q30355519	Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet
Q36924159	Protein Remote Homology Detection Based on an Ensemble Learning Approach
Q39537162	Protein Remote Homology Detection by Combining Chou's Pseudo Amino Acid Composition and Profile-Based Protein Representation
Q30399753	Protein Structure Classification and Loop Modeling Using Multiple Ramachandran Distributions
Q31013048	Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Q50944015	Protein alignment: Exact versus approximate. An illustration.
Q43140115	Protein complex discovery by interaction filtering from protein interaction networks using mutual rank coexpression and sequence similarity
Q34293765	Protein database searches using compositionally adjusted substitution matrices
Q52033388	Protein domain identification and improved sequence similarity searching using PSI-BLAST.
Q43104940	Protein flexibility and intrinsic disorder
Q47835315	Protein fold irregularities that hinder sequence analysis.
Q52077268	Protein fold recognition by total alignment probability.
Q36279845	Protein fold recognition using sequence-derived predictions
Q29616048	Protein interaction maps for complete genomes based on gene fusion events
Q40914189	Protein localization vector propagation: a method for improving the accuracy of drug repositioning
Q33244577	Protein ranking by semi-supervised network propagation
Q33695754	Protein ranking: from local to global structure in the protein similarity network
Q42374176	Protein remote homology detection based on bidirectional long short-term memory
Q50927764	Protein remote homology detection by combining Chou's distance-pair pseudo amino acid composition and principal component analysis.
Q27860483	Protein secondary structure prediction based on position-specific scoring matrices
Q33994062	Protein sequence alignment with family-specific amino acid similarity matrices
Q30368590	Protein sequence and structure alignments within one framework.
Q40534327	Protein sequence comparisons: searching databases and aligning sequences
Q34167843	Protein sequence redundancy reduction: comparison of various method
Q34675542	Protein sequence similarity searches using patterns as seeds
Q30342365	Protein structure alignment and fast similarity search using local shape signatures.
Q30397719	Protein structure determination using metagenome sequence data
Q92254314	Protein structure prediction
Q30341988	Protein structure prediction and analysis using the Robetta server.
Q36476631	Protein surface analysis for function annotation in high-throughput structural genomics pipeline
Q42210503	Protein surface representation and analysis by dimension reduction
Q44776939	Protein synthesis in Giardia lamblia may involve interaction between a downstream box (DB) in mRNA and an anti-DB in the 16S-like ribosomal RNA.
Q34329252	Protein-protein binding site identification by enumerating the configurations
Q41961515	Protein-protein interaction based on pairwise similarity.
Q38498009	Protein-protein interaction network-based detection of functionally similar proteins within species
Q30341996	ProteinDBS: a real-time retrieval system for protein structure comparison.
Q39532495	ProteoConnections: a bioinformatics platform to facilitate proteome and phosphoproteome analyses
Q38661643	Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes
Q38833957	Proteome-wide antigen discovery of novel protective vaccine candidates against Staphylococcus aureus infection
Q36926540	Proteome-wide discovery of evolutionary conserved sequences in disordered regions
Q39018613	Proteomic Clustering Analysis of SH2 Domain Datasets
Q37156162	Proteomic and genomic analysis reveals novel Campylobacter jejuni outer membrane proteins and potential heterogeneity
Q40562324	Proteomics computational analyses suggest that hepatitis C virus E1 and pestivirus E2 envelope glycoproteins are truncated class II fusion proteins
Q24800750	Proteomics computational analyses suggest that the carboxyl terminal glycoproteins of Bunyaviruses are class II viral fusion protein (beta-penetrenes)
Q36088572	PsRobot: a web-based plant small RNA meta-analysis toolbox
Q64085616	PseudoFuN: Deriving functional potentials of pseudogenes from integrative relationships with genes and microRNAs across 32 cancers
Q33435982	Pseudomonas aeruginosa MurE amide ligase: enzyme kinetics and peptide inhibitor
Q41005486	Purification, characterization, and kinetic mechanism of cyclin D1. CDK4, a major target for cell cycle regulation
Q90234897	PyGTED: Python Application for Computing Graph Traversal Edit Distance
Q34248001	PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL
Q30664477	PyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data.
Q30583395	PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data
Q33415932	Pyrosequencing of the chaperonin-60 universal target as a tool for determining microbial community composition
Q36481235	QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis
Q40408638	Quality assessment of protein model-structures using evolutionary conservation
Q46063281	Quantification of Inter-Sample Differences in T-Cell Receptor Repertoires Using Sequence-Based Information
Q28473198	Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function
Q40631262	QueTAL: a suite of tools to classify and compare TAL effectors functionally and phylogenetically.
Q33408820	Query large scale microarray compendium datasets using a model-based bayesian approach with variable selection
Q35205182	Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss?
Q30489110	R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring
Q33901400	RAPSearch: a fast protein similarity search tool for short reads
Q28603473	RASER: reads aligner for SNPs and editing sites of RNA
Q55053869	RBLOSUM performs better than CorBLOSUM with lesser error per query.
Q89637529	REP-X: An Evolution-guided Strategy for the Rational Design of Cysteine-less Protein Variants
Q42413406	RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model
Q33882396	RNA interference against hepatic epidermal growth factor receptor has suppressive effects on liver regeneration in rats
Q37678411	RNA interference-based therapeutics for human immunodeficiency virus HIV-1 treatment: synthetic siRNA or vector-based shRNA?
Q33761207	RNA protein granules modulate tau isoform expression and induce neuronal sprouting
Q33556640	RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti
Q36693569	RNA trans-splicing in flatworms. Analysis of trans-spliced mRNAs and genes in the human parasite, Schistosoma mansoni
Q42257010	RNA-seq analysis of the C. briggsae transcriptome
Q27488956	RNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technology
Q37800847	RNAi as a potential tool for biotechnological applications in fungi
Q47294415	RNAi technology in crop protection against arthropod pests, pathogens and nematodes.
Q92915315	RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment
Q24603023	RNApredator: fast accessibility-based prediction of sRNA targets
Q33292495	RScan: fast searching structural similarities for structured RNAs in large databases
Q35949014	Rapid HIV-1 Disease Progression in Individuals Infected with a Virus Adapted to Its Host Population
Q60937484	Rapid analysis of metagenomic data using signature-based clustering
Q35254542	Rapid and accurate estimates of statistical significance for sequence data base searches
Q47303868	Rapid and reliable protein structure determination via chemical shift threading
Q101216840	Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures
Q52074687	Rapid automatic detection and alignment of repeats in protein sequences.
Q21045410	Rapid motif-based prediction of circular permutations in multi-domain proteins
Q33635788	Rapid resistome mapping using nanopore sequencing
Q34799614	Rapid similarity search of proteins using alignments of domain arrangements
Q28270448	Rapid similarity searches of nucleic acid and protein data banks
Q42566501	RazerS--fast read mapping with sensitivity control
Q34046405	ReCoil - an algorithm for compression of extremely large datasets of dna data
Q35838447	ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites.
Q91869091	Reads Binning Improves Alignment-Free Metagenome Comparison
Q30806794	Real-time selective sequencing using nanopore technology
Q33906027	Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge
Q24556615	Recent Hits Acquired by BLAST (ReHAB): a tool to identify new hits in sequence similarity searches
Q28066913	Recent Progress in Machine Learning-Based Methods for Protein Fold Recognition
Q30392259	Recent advances in sequence-based protein structure prediction
Q55963652	Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases
Q36278812	Recognition of related proteins by iterative template refinement (ITR)
Q30391508	Recognizing protein substructure similarity using segmental threading
Q48295393	Recombinant 3-Hydroxy 3-Methyl Glutaryl-CoA Reductase from Candida glabrata (Rec-CgHMGR) Obtained by Heterologous Expression, as a Novel Therapeutic Target Model for Testing Synthetic Drugs.
Q39952069	Recombination at ColE1 cer requires the Escherichia coli xerC gene product, a member of the lambda integrase family of site-specific recombinases
Q47266634	Reconstructing High-Quality Large-Scale Metabolic Models with merlin
Q35562165	Reconstructing genome-scale metabolic models with merlin
Q43798585	Reconstruction and analysis of human alu genes
Q51966252	Recurrence time statistics: versatile tools for genomic DNA sequence analysis.
Q37319674	Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment
Q33652296	RefProtDom: a protein database with improved domain boundaries and homology relationships
Q35848801	Refinement by shifting secondary structure elements improves sequence alignments
Q58064496	Regular Language Constrained Sequence Alignment Revisited
Q42117981	Regulation of DNA replication at the end of the mitochondrial D-loop involves the helicase TWINKLE and a conserved sequence element.
Q40490900	Regulatory pattern Identification in nucleic acid sequences
Q48131853	Repeat unit polysaccharides of bacteria: a model for polymerization resembling that of ribosomes and fatty acid synthetase, with a novel mechanism for determining chain length
Q48397900	Repeated nucleotide sequence arrays in Balbiani ring 1 of Chironomus tentans contain internally nonrepeating and subrepeating elements
Q47842820	Representational differential analysis detects amplification of satellite sequences in postweaning multisystemic wasting syndrome of pigs
Q58159496	Representative Selection in Nonmetric Datasets
Q30409446	Representing and comparing protein folds and fold families using three-dimensional shape-density representations.
Q30357537	Representing and comparing protein structures as paths in three-dimensional space.
Q37423565	Reproducing the manual annotation of multiple sequence alignments using a SVM classifier
Q51931146	Repseek, a tool to retrieve approximate repeats from large DNA sequences.
Q60933039	Residue Adjacency Matrix Based Feature Engineering for Predicting Cysteine Reactivity in Proteins
Q40856721	Resolving the multiple sequence alignment problem using biogeography-based optimization with multiple populations
Q33261698	Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches
Q61813607	Revealing the Presence of a Symbolic Sequence Representing Multiple Nucleotides Based on K-Means Clustering of Oligonucleotides
Q37043759	Reverse transcriptase and intron number evolution
Q30968095	Review of alignment and SNP calling algorithms for next-generation sequencing data.
Q33650299	Rhodobacter capsulatus puf operon encodes a regulatory protein (PufQ) for bacteriochlorophyll biosynthesis
Q33262266	RiboSubstrates: a web application addressing the cleavage specificities of ribozymes in designated genomes
Q21134742	Ribosomal history reveals origins of modern protein synthesis
Q51928903	Rnall: an efficient algorithm for predicting RNA local secondary structural landscape in genomes.
Q33755589	Robust and accurate prediction of noncoding RNAs from aligned sequences
Q45965220	Robust machine learning algorithms predict microRNA genes and targets.
Q33700525	Role of Hsp70 ATPase domain intrinsic dynamics and sequence evolution in enabling its functional interactions with NEFs
Q30374802	Roles of solvent accessibility and gene expression in modeling protein sequence evolution
Q40456180	Rust-Bio: a fast and safe bioinformatics library.
Q30341993	SA-Search: a web tool for protein structure mining based on a Structural Alphabet
Q30365518	SABERTOOTH: protein structural alignment based on a vectorial structure representation.
Q89430466	SAFlex: A structural alphabet extension to integrate protein structural flexibility and missing data information
Q36749353	SARSA: a web tool for structural alignment of RNA using a structural alphabet
Q30417518	SAS-Pro: simultaneous residue assignment and structure superposition for protein structure alignment
Q24813471	SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs
Q39785297	SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser
Q46023509	SCPC: a method to structurally compare protein complexes.
Q30369218	SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.
Q33407852	SE: an algorithm for deriving sequence alignment from a pair of superimposed structures
Q36278793	SELF-BLM: Prediction of drug-target interactions via self-training SVM
Q37293542	SEME: a fast mapper of Illumina sequencing reads with statistical evaluation
Q30359175	SEQOPTICS: a protein sequence clustering system.
Q55080651	SEVENS: a database for comprehensive GPCR genes obtained from genomes: -Update to 68 eukaryotes.
Q35763422	SFESA: a web server for pairwise alignment refinement by secondary structure shifts
Q56918354	SHOT: a web server for the construction of genome phylogenies
Q28304260	SHRiMP2: sensitive yet practical SHort Read Mapping
Q21563490	SHRiMP: accurate mapping of short color-space reads
Q33600553	SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
Q30486455	SIMAP--the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage
Q25255876	SIMAP: the similarity matrix of proteins
Q33704815	SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data
Q29547824	SMART 4.0: towards genomic data integration
Q27935139	SMS1, a high-copy suppressor of the yeast mas6 mutant, encodes an essential inner membrane protein required for mitochondrial protein import
Q33325919	SNARE protein mimicry by an intracellular bacterium
Q42560501	SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.).
Q30369735	SP5: improving protein fold recognition by using torsion angle profiles and profile-based gap penalty model
Q35101944	SPIC: a novel similarity metric for comparing transcription factor binding site motifs based on information contents
Q30410592	SProt: sphere-based protein structure similarity algorithm.
Q29614458	SSAHA: a fast search method for large DNA databases
Q40986056	SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation.
Q21132401	SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
Q34094543	STELLAR: fast and exact local alignments
Q24523893	STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
Q33287738	SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition
Q34830620	SW#-GPU-enabled exact alignments on genome scale
Q35882402	SW#db: GPU-Accelerated Exact Sequence Similarity Database Search
Q24810415	SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data
Q48127493	SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development
Q59330151	SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences
Q39429322	SWORD-a highly efficient protein database search
Q33380447	SWPS3 - fast multi-threaded vectorized Smith-Waterman for IBM Cell/B.E. and x86/SSE2
Q39790370	Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins
Q55899829	Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico
Q93128458	SamPler - a novel method for selecting parameters for gene functional annotation routines
Q27346799	Sampling rare events: Statistics of local sequence alignments
Q36560611	Scalable linkage-disequilibrium-based selective sweep detection: a performance guide
Q61730894	Scalable multicore architectures for long DNA sequence comparison
Q47101017	Scaling bioinformatics applications on HPC.
Q47148622	Scientific Opinion on the assessment of allergenicity of GM plants and microorganisms and derived food and feed
Q35880992	Scope and limitations of yeast as a model organism for studying human tissue-specific pathways
Q48681166	Score distributions of gapped multiple sequence alignments down to the low-probability tail.
Q41815115	Scoring profile-to-profile sequence alignments
Q45845111	Scrambled duplications in the feline leukemia virus gag gene: a putative pattern for molecular evolution
Q37712349	Screening target specificity of siRNAs by rapid amplification of cDNA ends (RACE) for non-sequenced species.
Q34611888	Searching databases of conserved sequence regions by aligning protein multiple-alignments
Q33316856	Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
Q43465731	Searching for new genetic variations in expression databases for the GABAergic and glutamatergic systems
Q34056284	Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps.
Q30444379	Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
Q34606219	Searching remote homology with spectral clustering with symmetry in neighborhood cluster kernels
Q59039435	Secure OpenID Authentication Model by Using Trusted Computing
Q30501983	Seeds for effective oligonucleotide design
Q52926243	Selecting effective siRNAs based on guide RNA structure.
Q36329363	Selecting high-quality negative samples for effectively predicting protein-RNA interactions
Q35073856	Selecting protein targets for structural genomics of Pyrobaculum aerophilum: validating automated fold assignment methods by using binary hypothesis testing
Q30410194	Selecting the Right Similarity-Scoring Matrix
Q33299609	Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy
Q30827454	Selection of representative protein data sets
Q47263507	Self-organizing map-based discovery and visualization of human endogenous retroviral sequence groups
Q30312119	Sensitivity and selectivity in protein structure comparison
Q90915662	Sequence Similarity Searching
Q34348308	Sequence alignment and penalty choice. Review of concepts, case studies and implications
Q41823007	Sequence alignment as hypothesis testing
Q41771671	Sequence alignment by cross-correlation.
Q52058930	Sequence alignment: an approximation law for the Z-value with applications to databank scanning.
Q42645735	Sequence analysis of an internal 9.72-kb segment from the 30-kb denitrification gene cluster of Pseudomonas stutzeri
Q35014302	Sequence analysis of multidomain proteins: past perspectives and future directions
Q33929199	Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana
Q34408334	Sequence and transcript analysis of a novel Methanosarcina barkeri methyltransferase II homolog and its associated corrinoid protein homologous to methionine synthase
Q71243288	Sequence banks. Searching for sequence similarities
Q24562661	Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions
Q82037452	Sequence comparison via polar coordinates representation and curve tree
Q52579761	Sequence comparison with concave weighting functions.
Q30865880	Sequence conservation and expression of the sex-lethal homologue in the fly Megaselia scalaris
Q24650356	Sequence context-specific profiles for homology searching
Q36179862	Sequence evolution correlates with structural dynamics
Q42649021	Sequence of nifL from Klebsiella pneumoniae: mode of action and relationship to two families of regulatory proteins
Q30004188	Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
Q36748218	Sequence search algorithms for single pass sequence identification: does one size fit all?
Q36086715	Sequence search on a supercomputer
Q52682885	Sequence similarity ('homology') searching for molecular biologists.
Q86846937	Sequence studies on the soybean chloroplast 16S-23S rDNA spacer region : Comparison with other angiosperm sequences and proposal of a generalized RNA secondary structure model for the intergenic regions
Q42320406	Sequence-, structure-, and dynamics-based comparisons of structurally homologous CheY-like proteins
Q27317165	Sequence-based prediction of type III secreted proteins
Q36698070	Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm
Q34185285	Sequence-specific error profile of Illumina sequencers
Q22122079	Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
Q48072975	Sexual and apomictic seed formation in Hieracium requires the plant polycomb-group gene FERTILIZATION INDEPENDENT ENDOSPERM.
Q36144905	Shape-based alignment of genomic landscapes in multi-scale resolution
Q40517754	Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping
Q33365416	Short Read Mapping: An Algorithmic Tour
Q33407759	Short read DNA fragment anchoring algorithm
Q57590548	Shotgun Sequence Assembly
Q42617751	Shotgun protein sequencing: assembly of peptide tandem mass spectra from mixtures of modified proteins.
Q33693914	Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model
Q33236749	Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Q52083208	Significance of Z-value statistics of Smith-Waterman scores for protein alignments.
Q24641948	Significance of gapped sequence alignments
Q41360907	Significant deviations in the configurations of homologous tandem repeats in prokaryotic genomes
Q33383226	Silent but not static: accelerated base-pair substitution in silenced chromatin of budding yeasts
Q45807792	Simian virus 40 illegitimate recombination occurs near short direct repeats
Q28602181	Similarity Estimation Between DNA Sequences Based on Local Pattern Histograms of Binary Images
Q38128158	Similarity-based machine learning methods for predicting drug-target interactions: a brief review
Q51055916	Simple alignment-free methods for protein classification: a case study from G-protein-coupled receptors.
Q42576675	Simple sequence repeats and genome plasticity in Streptococcus agalactiae
Q37641695	Simultaneous detection of BRCA mutations and large genomic rearrangements in germline DNA and FFPE tumor samples
Q28830284	Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction
Q35774508	Single-taxon field measurements of bacterial gene regulation controlling DMSP fate.
Q30670853	Singular value decomposition analysis of protein sequence alignment score data
Q33818534	Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
Q26779005	Small RNAs in Plant Responses to Abiotic Stresses: Regulatory Roles and Study Methods
Q33933704	Smith-Waterman peak alignment for comprehensive two-dimensional gas chromatography-mass spectrometry.
Q39783279	SoDA2: a Hidden Markov Model approach for identification of immunoglobulin rearrangements
Q33229588	SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations
Q28468363	Social and Genetic Networks of HIV-1 Transmission in New York City
Q35779614	Software tools for analyzing pairwise alignments of long sequences
Q64276438	Solr-Plant: efficient extraction of plant names from text
Q27687482	Solution NMR studies of the plant peptide hormone CEP inform function
Q39107407	Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade
Q36580560	Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability
Q57387740	Some operations research methods for analyzing protein sequences and structures
Q38890931	Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences.
Q46919850	Spectral representation of reduced protein models
Q41869319	Speeding up all-against-all protein comparisons while maintaining sensitivity by considering subsequence-level homology
Q36697490	Spleen necrosis virus, an avian immunosuppressive retrovirus, shares a receptor with the type D simian retroviruses
Q40935744	Spleen-specific expression of the malaria-inducible intronless mouse gene imap38.
Q35730826	Split-alignment of genomes finds orthologies more accurately.
Q59310851	State-of-the-Art in Smith–Waterman Protein Database Search on HPC Platforms
Q30795515	Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data
Q28534714	Statistical analysis of molecular signal recording
Q33224439	Statistical geometry approach to the study of functional effects of human nonsynonymous SNPs
Q33260265	Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice
Q61443160	Statistical significance approximation for local similarity analysis of dependent time series data
Q34327872	Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences
Q43886391	Stochastic models of sequence evolution including insertion-deletion events
Q39227630	Strain-specific genes of Helicobacter pylori: distribution, function and dynamics.
Q36882836	Strategies for whole microbial genome sequencing and analysis
Q31124112	Streamlined analysis of duplex sequencing data with Du Novo
Q58515580	Striking sequence similarity over almost 100 kilobases of human and mouse T–cell receptor DNA
Q64916428	String correction using the Damerau-Levenshtein distance.
Q36293171	String kernels for protein sequence comparisons: improved fold recognition
Q57924576	String-Matching and Alignment Algorithms for Finding Motifs in NGS Data
Q34582331	Striped Smith-Waterman speeds database searches six times over other SIMD implementations
Q57013589	Strongly Connected Components can Predict Protein Structure
Q42358844	Structural Alteration of OmpR as a Source of Ertapenem Resistance in a CTX-M-15-Producing Escherichia coli O25b:H4 Sequence Type 131 Clinical Isolate
Q58837091	Structural Insights from Molecular Dynamics Simulations of Tryptophan 7-Halogenase and Tryptophan 5-Halogenase
Q36476855	Structural and functional characterization of CFE88: evidence that a conserved and essential bacterial protein is a methyltransferase
Q25257209	Structural and functional properties of genes involved in human cancer
Q51959180	Structural basis for the function of anti-idiotypic antibody in immune memory.
Q85065837	Structural bioinformatics of Neisseria meningitidis LD-carboxypeptidase: implications for substrate binding and specificity
Q90445530	Structural characterization and molecular dynamics simulations of the caprine and bovine solute carrier family 11 A1 (SLC11A1)
Q64901718	Structural comparison strengthens the higher-order classification of proteases related to chymotrypsin.
Q34181296	Structural consensus among antibodies defines the antigen binding site
Q30333243	Structural details (kinks and non-alpha conformations) in transmembrane helices are intrahelically determined and can be predicted by sequence pattern descriptors
Q34418947	Structural phylogeny by profile extraction and multiple superimposition using electrostatic congruence as a discriminator
Q30381468	Structural re-alignment in an immunogenic surface region of ricin A chain.
Q33750272	Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs
Q42432070	Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways
Q42616353	Structure and sequence of the rfb (O antigen) gene cluster of Salmonella serovar typhimurium (strain LT2)
Q42600391	Structure and transcriptional impact of divergent repetitive elements inserted within Phanerochaete chrysosporium strain RP-78 genes
Q33759112	Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism.
Q35358391	Structure of a TLR4-interacting SPA4 peptide
Q34354306	Structure of core domain of fibril-forming PHF/Tau fragments.
Q36742760	Structure of the Mycobacterium tuberculosis antigen 88, a protein related to the Escherichia coli PstA periplasmic phosphate permease subunit.
Q41485024	Structure, organization, and transcriptional regulation of a family of copper radical oxidase genes in the lignin-degrading basidiomycete Phanerochaete chrysosporium
Q30420492	Structure-based identification and clustering of protein families and superfamilies
Q54599216	Structure-based sequence alignment of elongation factors Tu and G with related GTPases involved in translation.
Q39038978	Structure-function relationship of Chikungunya nsP2 protease: A comparative study with papain
Q83277973	Studies on two closely related species of octocorallians: biochemical and molecular characteristics of the organic matrices of endoskeletal sclerites
Q42282158	Study of LZ-word distribution and its application for sequence comparison
Q42664337	Study of intrachromosomal duplications among the eukaryote genomes
Q57712976	Studying the Influence of Semantic Constraints in AVE
Q33851690	SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment
Q42640699	Subfamily structure and evolution of the human L1 family of repetitive sequences
Q21045414	Suboptimal sequence alignment in molecular biology
Q46201441	Substrate specificity and catalytic mechanism of a xyloglucan xyloglucosyl transferase HvXET6 from barley (Hordeum vulgare L.).
Q36275489	Subunit vaccine candidates against Aeromonas salmonicida in rainbow trout Oncorhynchus mykiss.
Q69076127	Successive waves of fixation of B1 variants in rodent lineage history
Q50317651	Sugar versus fat: elimination of glycogen storage improves lipid accumulation in Yarrowia lipolytica.
Q40814543	Superantigen recognition by gammadelta T cells: SEA recognition site for human Vgamma2 T cell receptors
Q37327753	Supervised prediction of drug-target interactions using bipartite local models
Q34372783	Supervised protein family classification and new family construction
Q42111625	Support vector training of protein alignment models
Q34318653	Surprising results on phylogenetic tree building methods based on molecular sequences
Q28486049	Sustaining N2-dependent growth in the presence of CO
Q42132505	Swarm: robust and fast clustering method for amplicon-based studies
Q40313673	Symmetric time warping, Boltzmann pair probabilities and functional genomics
Q36977670	Syntactic structures in languages and biology
Q41507297	Syntenator: multiple gene order alignments with a gene-specific scoring function
Q37683561	SysPTM 2.0: an updated systematic resource for post-translational modification
Q37294395	SysPTM: a systematic resource for proteomic research on post-translational modifications
Q48063379	Systematic Classification and Analysis of Themes in Protein−DNA Recognition
Q47801800	Systematic comparative study of computational methods for T-cell receptor sequencing data analysis
Q24670418	Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis
Q90162435	Systems Biology Analysis Reveals Eight SLC22 Transporter Subgroups, Including OATs, OCTs, and OCTNs
Q36350851	T cell receptor V beta gene usage in a human alloreactive response. Shared structural features among HLA-B27-specific T cell clones
Q99579412	T cell receptor sequence clustering and antigen specificity
Q33719865	T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms
Q30368126	TALI: local alignment of protein structures using backbone torsion angles.
Q44706800	TEXTAL system: artificial intelligence techniques for automated protein model building
Q38651596	THPdb: Database of FDA-approved peptide and protein therapeutics
Q44425447	TI2BioP: Topological Indices to BioPolymers. Its practical use to unravel cryptic bacteriocin-like domains.
Q34529789	TIGER: tiled iterative genome assembler
Q39771532	TMC278, a next-generation nonnucleoside reverse transcriptase inhibitor (NNRTI), active against wild-type and NNRTI-resistant HIV-1.
Q52026883	TRAP: Tandem Repeat Assembly Program produces improved shotgun assemblies of repetitive sequences.
Q35095189	TSSV: a tool for characterization of complex allelic variants in pure and mixed genomes.
Q35977571	Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms.
Q24544245	Target prediction for small, noncoding RNAs in bacteria
Q45344146	Target-align: a tool for plant microRNA target identification
Q30949487	Target-based drug discovery for the development of novel antiinfectives
Q36749437	TargetRNA: a tool for predicting targets of small RNA action in bacteria
Q47986739	Targeting TLRs expands the antibody repertoire in response to a malaria vaccine
Q35170579	Telling the whole story in a 10,000-genome world
Q33260252	Testing statistical significance scores of sequence comparison methods with structure similarity
Q33413590	Textual data compression in computational biology: a synopsis
Q35561978	The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
Q39825037	The ActA polypeptides of Listeria ivanovii and Listeria monocytogenes harbor related binding sites for host microfilament proteins
Q36278970	The Alacoil: a very tight, antiparallel coiled-coil of helices
Q70402986	The Alu family developed through successive waves of fixation closely connected with primate lineage history
Q22122056	The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Q28202145	The Drosophila VEGF receptor homolog is expressed in hemocytes
Q50905432	The EMBL Nucleotide Sequence Database.
Q31450792	The EMBL Nucleotide Sequence Database. Contributing and accessing data
Q57252775	The EMBL data library
Q57273946	The EMBL nucleotide sequence database
Q34318255	The Ensembl computing architecture
Q34374413	The European Bioinformatics Institute (EBI) databases
Q72745233	The European Bioinformatics Institute (EBI) databases
Q30332390	The European Bioinformatics Institute's data resources.
Q28554409	The First Report of miRNAs from a Thysanopteran Insect, Thrips palmi Karny Using High-Throughput Sequencing
Q21972829	The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility
Q35827279	The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis
Q24811161	The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment
Q39763180	The Hayflick Limit May Determine the Effective Clonal Diversity of Naive T Cells
Q28361507	The Hsp90 family of proteins in Arabidopsis thaliana
Q34865360	The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease
Q54215616	The Hyr1 protein from the fungus Candida albicans is a cross kingdom immunotherapeutic target for Acinetobacter bacterial infection.
Q35037243	The IGS Standard Operating Procedure for Automated Prokaryotic Annotation
Q28548332	The LUX Score: A Metric for Lipidome Homology
Q35827646	The Leishmania metaphylome: a comprehensive survey of Leishmania protein phylogenetic relationships
Q43478554	The NAM8 gene in Saccharomyces cerevisiae encodes a protein with putative RNA binding motifs and acts as a suppressor of mitochondrial splicing deficiencies when overexpressed.
Q49320136	The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification.
Q39790639	The PSSH database of alignments between protein sequences and tertiary structures.
Q40085887	The Purine Bias of Coding Sequences is Determined by Physicochemical Constraints on Proteins
Q33339665	The Q300 gene: a novel transcription unit induced in simian virus 40-infected and -transformed mouse cells
Q28710196	The RCSB Protein Data Bank: new resources for research and education
Q52067999	The REPRO server: finding protein internal sequence repeats through the Web.
Q30377454	The SALAMI protein structure search server.
Q24793731	The SYSTERS Protein Family Database in 2005
Q34475796	The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite's biology
Q22065842	The Sequence of the Human Genome
Q34337291	The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Q43816698	The Tribolium chitin synthase genes TcCHS1 and TcCHS2 are specialized for synthesis of epidermal cuticle and midgut peritrophic matrix
Q42118783	The Use of Peptide Markers of Carp and Herring Allergens as an Example of Detection of Sequenced and Non-Sequenced Proteins.
Q24675824	The accuracy of several multiple sequence alignment programs for proteins
Q36124687	The ancestry of insertion sequences common to Escherichia coli and Salmonella typhimurium
Q42001054	The apolipoprotein B3304-3317 peptide as an inhibitor of the lipoprotein (a):apolipoprotein B-containing lipoprotein interaction
Q43743136	The arcB gene of Escherichia coli encodes a sensor-regulator protein for anaerobic repression of the arc modulon
Q33658280	The art of matchmaking: sequence alignment methods and their structural implications
Q31013651	The aspartic proteinase family of three Phytophthora species.
Q35652995	The bioinformatics challenges in comparative analysis of cereal genomes-an overview
Q89280356	The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis
Q28752350	The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments
Q33640089	The construction and use of log-odds substitution scores for multiple sequence alignment
Q48058306	The construction of Arabidopsis expressed sequence tag assemblies. A new resource to facilitate gene identification
Q33208408	The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
Q27674965	The crystallographic structure of Panicum Mosaic Virus (PMV)
Q21135253	The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment
Q34311867	The czc operon of Alcaligenes eutrophus CH34: from resistance mechanism to the removal of heavy metals
Q30332272	The directional atomic solvation energy: an atom-based potential for the assignment of protein sequences to known folds.
Q33347409	The effectiveness of position- and composition-specific gap costs for protein similarity searches.
Q51169324	The effects of different representations on static structure analysis of computer malware signatures.
Q42687474	The emergence of protocadherin-PC expression during the acquisition of apoptosis-resistance by prostate cancer cells
Q34980190	The enigmatic mitochondrial ORF ymf39 codes for ATP synthase chain b
Q40467056	The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells.
Q30977586	The estimation of statistical parameters for local alignment score distributions.
Q28654827	The evolution of comparative genomics
Q28476558	The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach
Q33275615	The evolutionary history of cytochrome P450 genes in four filamentous Ascomycetes
Q41838245	The fungus Ustilago maydis and humans share disease-related proteins that are not found in Saccharomyces cerevisiae.
Q39557116	The gene encoding the low-affinity penicillin-binding protein 3r in Enterococcus hirae S185R is borne on a plasmid carrying other antibiotic resistance determinants
Q43077053	The genetics, transcriptional profiles, and catalytic properties of UDP-alpha-D-xylose 4-epimerases from barley
Q33611291	The genome sequence DataBase
Q22066219	The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
Q21092840	The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
Q22066391	The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533
Q24814780	The genomics of disulfide bonding and protein stabilization in thermophiles
Q30354847	The global transmission network of HIV-1
Q22122214	The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Q37353488	The highly attenuated oncolytic recombinant vaccinia virus GLV-1h68: comparative genomic features and the contribution of F14.5L inactivation
Q33568457	The human VE-cadherin promoter is subjected to organ-specific regulation and is activated in tumour angiogenesis
Q36672352	The human phylome
Q34217844	The human proteomics initiative (HPI).
Q30362612	The identification of complete domains within protein sequences using accurate E-values for semi-global alignment
Q42223133	The intrinsic disorder status of the human hepatitis C virus proteome
Q35288143	The inversion of the Control Region in three mitogenomes provides further evidence for an asymmetric model of vertebrate mtDNA replication
Q80196680	The lactococcal abortive infection protein AbiP is membrane-anchored and binds nucleic acids
Q30436672	The limits of protein sequence comparison?
Q28590695	The meiosis-specific Xmr gene product is homologous to the lymphocyte Xlr protein and is a component of the XY body
Q47876644	The merozoite surface protein 6 gene codes for a 36 kDa protein associated with the Plasmodium falciparum merozoite surface protein-1 complex
Q33515419	The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus
Q91986596	The novel microRNAs hsa-miR-nov7 and hsa-miR-nov3 are over-expressed in locally advanced breast cancer
Q92754263	The parallelism motifs of genomic data analysis
Q35792955	The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity
Q33533280	The porcelain crab transcriptome and PCAD, the porcelain crab microarray and sequence database.
Q34299144	The practical evaluation of DNA barcode efficacy
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P356	DOI	10.1016/0022-2836(81)90087-5
P953	full work available at URL	https://api.elsevier.com/content/article/PII:0022283681900875?httpAccept=text/xml
		https://api.elsevier.com/content/article/PII:0022283681900875?httpAccept=text/plain
P3181	OpenCitations bibliographic resource ID	363042
P698	PubMed publication ID	7265238
P5875	ResearchGate publication ID	15934339

P50	author	Temple F. Smith	Q7698536
		Michael Waterman	Q1694475
P2093	author name string	M. S. Waterman
P2860	cites work	A general method applicable to the search for similarities in the amino acid sequence of two proteins	Q27860563
		An improved method of testing for evolutionary homology	Q30011439
		An application of information theory to genetic mutations and the matching of polypeptide sequences	Q47935872
		On the Theory and Computation of Evolutionary Distances	Q56446192
		Some biological sequence metrics	Q56514160
		A molecular sequence metric and evolutionary trees	Q56530668
P433	issue	1
P407	language of work or name	English	Q1860
P921	main subject	nucleic acid sequence	Q863908
		structural biology	Q908902
		chemical model	Q25109595
P1104	number of pages	3
P304	page(s)	195-197
P577	publication date	1981-03-25
P1433	published in	Journal of Molecular Biology	Q925779
P1476	title	Identification of common molecular subsequences
P478	volume	147

Identification of common molecular subsequences

scientific article (publication date: 25 March 1981)

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