MaGe: a microbial genome annotation system supported by synteny results

scientific article

MaGe: a microbial genome annotation system supported by synteny results is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKJ406
P3181OpenCitations bibliographic resource ID90038
P932PMC publication ID1326237
P698PubMed publication ID16407324
P5875ResearchGate publication ID7365371

P50authorClaude ScarpelliQ28322609
Valérie BarbeQ28322616
Claudine MédigueQ28322622
Zoé RouyQ28322625
P2093author name stringAurélie Lajus
Stéphane Cruveiller
David Vallenet
Laurent Labarre
Géraldine Pascal
Stéphanie Bocs
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Genomic functional annotation using co-evolution profiles of gene clustersQ24793609
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A Bayesian method for identifying missing enzymes in predicted metabolic pathway databasesQ24800167
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomesQ24813536
Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbersQ24813971
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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomesQ24817116
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The KEGG resource for deciphering the genomeQ27860687
Identification of common molecular subsequencesQ27860816
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomesQ27860838
The Gene Ontology (GO) database and informatics resourceQ27860988
The Pathway Tools softwareQ28217270
Querying and computing with BioCyc databasesQ28257096
Assigning protein functions by comparative genome analysis: Protein phylogenetic profilesQ29039336
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structureQ29547343
Detecting protein function and protein-protein interactions from genome sequencesQ29547473
SCOP database in 2004: refinements integrate structure and sequence family dataQ29615988
Conservation of gene order: a fingerprint of proteins that physically interactQ29616049
Using the COG database to improve gene recognition in complete genomesQ30644430
Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.Q30692397
Viewing and annotating sequence data with ArtemisQ30809868
Characterization of a bordetella pertussis diaminopimelate (DAP) biosynthesis locus identifies dapC, a novel gene coding for an N-succinyl-L,L-DAP aminotransferaseQ30878577
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.Q31010372
Molecular evolution of the lysine biosynthetic pathways.Q34152373
MetaCyc: a multiorganism database of metabolic pathways and enzymes.Q34934265
The ERGO genome analysis and discovery systemQ35159618
AMIGene: Annotation of MIcrobial GenesQ35208274
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GenDB--an open source genome annotation system for prokaryote genomesQ39747829
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Functional clues for hypothetical proteins based on genomic context analysis in prokaryotesQ40637640
Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicumQ42607275
Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).Q45168780
MAGPIE: automated genome interpretationQ47630029
Go hunting in sequence databases but watch out for the trapsQ48059454
CAAT-Box, Contigs-Assembly and Annotation Tool-Box for genome sequencing projects.Q48561395
Use of contiguity on the chromosome to predict functional coupling.Q51642809
A probabilistic method for identifying start codons in bacterial genomes.Q52049906
Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.Q52465895
Universal biases in protein composition of model prokaryotes.Q54487161
Automated annotation of microbial proteomes in SWISS-PROT.Q54670306
The Dual Biosynthetic Capability ofN-Acetylornithine Aminotransferase in Arginine and Lysine Biosynthesis†Q56050417
The GeneQuiz Web server: protein functional analysis through the WebQ58073758
A System for Automated Bacterial (genome) Integrated Annotation--SABIAQ61037746
Analysis of intrachromosomal duplications in yeast Saccharomyces cerevisiae: a possible model for their originQ74046610
MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene productsQ74261760
Errors in genome annotationQ77326443
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectgenome annotationQ19753316
P304page(s)53-65
P577publication date2006-01-01
P1433published inNucleic Acids ResearchQ135122
P1476titleMaGe: a microbial genome annotation system supported by synteny results
P478volume34

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