scholarly article | Q13442814 |
P50 | author | Claude Scarpelli | Q28322609 |
Valérie Barbe | Q28322616 | ||
Claudine Médigue | Q28322622 | ||
Zoé Rouy | Q28322625 | ||
P2093 | author name string | Aurélie Lajus | |
Stéphane Cruveiller | |||
David Vallenet | |||
Laurent Labarre | |||
Géraldine Pascal | |||
Stéphanie Bocs | |||
P2860 | cites work | Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125 | Q22065745 |
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium | Q22065987 | ||
EcoGene: a genome sequence database for Escherichia coli K-12. | Q24515312 | ||
BASys: a web server for automated bacterial genome annotation | Q24530556 | ||
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence | Q24544402 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
Rfam: annotating non-coding RNAs in complete genomes | Q24558580 | ||
The Universal Protein Resource (UniProt) | Q24558582 | ||
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins | Q24558592 | ||
STRING: known and predicted protein-protein associations, integrated and transferred across organisms | Q24558597 | ||
Enzyme-specific profiles for genome annotation: PRIAM | Q24642072 | ||
The TIGRFAMs database of protein families | Q24681677 | ||
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes | Q24701143 | ||
The PEDANT genome database in 2005 | Q24793326 | ||
Genomic functional annotation using co-evolution profiles of gene clusters | Q24793609 | ||
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes | Q24793999 | ||
Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation | Q24794244 | ||
Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons | Q24796432 | ||
InterPro, progress and status in 2005 | Q24796722 | ||
A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases | Q24800167 | ||
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes | Q24813536 | ||
Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers | Q24813971 | ||
Phydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis | Q24815778 | ||
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes | Q24817116 | ||
Improved prediction of signal peptides: SignalP 3.0 | Q27860548 | ||
The KEGG resource for deciphering the genome | Q27860687 | ||
Identification of common molecular subsequences | Q27860816 | ||
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes | Q27860838 | ||
The Gene Ontology (GO) database and informatics resource | Q27860988 | ||
The Pathway Tools software | Q28217270 | ||
Querying and computing with BioCyc databases | Q28257096 | ||
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles | Q29039336 | ||
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure | Q29547343 | ||
Detecting protein function and protein-protein interactions from genome sequences | Q29547473 | ||
SCOP database in 2004: refinements integrate structure and sequence family data | Q29615988 | ||
Conservation of gene order: a fingerprint of proteins that physically interact | Q29616049 | ||
Using the COG database to improve gene recognition in complete genomes | Q30644430 | ||
Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption. | Q30692397 | ||
Viewing and annotating sequence data with Artemis | Q30809868 | ||
Characterization of a bordetella pertussis diaminopimelate (DAP) biosynthesis locus identifies dapC, a novel gene coding for an N-succinyl-L,L-DAP aminotransferase | Q30878577 | ||
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. | Q31010372 | ||
Molecular evolution of the lysine biosynthetic pathways. | Q34152373 | ||
MetaCyc: a multiorganism database of metabolic pathways and enzymes. | Q34934265 | ||
The ERGO genome analysis and discovery system | Q35159618 | ||
AMIGene: Annotation of MIcrobial Genes | Q35208274 | ||
LASSAP, a LArge Scale Sequence compArison Package | Q38558058 | ||
SubtiList: the reference database for the Bacillus subtilis genome | Q39524042 | ||
GenDB--an open source genome annotation system for prokaryote genomes | Q39747829 | ||
GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins | Q40403442 | ||
Functional clues for hypothetical proteins based on genomic context analysis in prokaryotes | Q40637640 | ||
Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum | Q42607275 | ||
Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC). | Q45168780 | ||
MAGPIE: automated genome interpretation | Q47630029 | ||
Go hunting in sequence databases but watch out for the traps | Q48059454 | ||
CAAT-Box, Contigs-Assembly and Annotation Tool-Box for genome sequencing projects. | Q48561395 | ||
Use of contiguity on the chromosome to predict functional coupling. | Q51642809 | ||
A probabilistic method for identifying start codons in bacterial genomes. | Q52049906 | ||
Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures. | Q52465895 | ||
Universal biases in protein composition of model prokaryotes. | Q54487161 | ||
Automated annotation of microbial proteomes in SWISS-PROT. | Q54670306 | ||
The Dual Biosynthetic Capability ofN-Acetylornithine Aminotransferase in Arginine and Lysine Biosynthesis† | Q56050417 | ||
The GeneQuiz Web server: protein functional analysis through the Web | Q58073758 | ||
A System for Automated Bacterial (genome) Integrated Annotation--SABIA | Q61037746 | ||
Analysis of intrachromosomal duplications in yeast Saccharomyces cerevisiae: a possible model for their origin | Q74046610 | ||
MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products | Q74261760 | ||
Errors in genome annotation | Q77326443 | ||
P433 | issue | 1 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | genome annotation | Q19753316 |
P304 | page(s) | 53-65 | |
P577 | publication date | 2006-01-01 | |
P1433 | published in | Nucleic Acids Research | Q135122 |
P1476 | title | MaGe: a microbial genome annotation system supported by synteny results | |
P478 | volume | 34 |
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