| scholarly article | Q13442814 |
| P50 | author | Kenneth H. Wolfe | Q30106741 |
| Kevin P Byrne | Q58175661 | ||
| P2093 | author name string | David Armisén | |
| Seán S Óhéigeartaigh | |||
| P2860 | cites work | Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths | Q21090212 |
| Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species | Q21142635 | ||
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| Comparison of 61 sequenced Escherichia coli genomes | Q24614300 | ||
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| Salmonella typhimurium cobalamin (vitamin B12) biosynthetic genes: functional studies in S. typhimurium and Escherichia coli | Q24684769 | ||
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| Statistical methods for detecting molecular adaptation | Q28140163 | ||
| Escherichia coli in disguise: molecular origins of Shigella | Q28205317 | ||
| Microbial production of vitamin B12 | Q28213074 | ||
| A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes | Q28306948 | ||
| A recalibrated molecular clock and independent origins for the cholera pandemic clones | Q28756125 | ||
| The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species | Q29617106 | ||
| On the total number of genes and their length distribution in complete microbial genomes | Q30002407 | ||
| Five different enzymatic activities are associated with the multienzyme complex of fatty acid oxidation from Escherichia coli | Q36341022 | ||
| Automated protein function prediction--the genomic challenge | Q36505962 | ||
| Regulation of fatty acid metabolism in bacteria. | Q36962272 | ||
| Small membrane proteins found by comparative genomics and ribosome binding site models. | Q37039330 | ||
| Proteogenomics: needs and roles to be filled by proteomics in genome annotation | Q37107662 | ||
| Isolation of a multi-enzyme complex of fatty acid oxidation from Escherichia coli | Q37581558 | ||
| Using comparative genome analysis to identify problems in annotated microbial genomes. | Q37739687 | ||
| High-throughput DNA sequencing--concepts and limitations | Q37756751 | ||
| Comparative genome analysis and gene finding in Candida species using CGOB. | Q40578048 | ||
| The uncharacterized transcription factor YdhM is the regulator of the nemA gene, encoding N-ethylmaleimide reductase | Q42406816 | ||
| Psi-Phi: exploring the outer limits of bacterial pseudogenes. | Q42418019 | ||
| Accuracy improvement for identifying translation initiation sites in microbial genomes | Q42631176 | ||
| Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. | Q42645426 | ||
| Molecular cloning of the nemA gene encoding N-ethylmaleimide reductase from Escherichia coli | Q42648918 | ||
| A single mutation in the IF3 N-terminal domain perturbs the fidelity of translation initiation at three levels | Q46475245 | ||
| The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis | Q46730215 | ||
| Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA. | Q46963426 | ||
| CobD, a novel enzyme with L-threonine-O-3-phosphate decarboxylase activity, is responsible for the synthesis of (R)-1-amino-2-propanol O-2-phosphate, a proposed new intermediate in cobalamin biosynthesis in Salmonella typhimurium LT2. | Q48040146 | ||
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| Overproduction of a selenocysteine-containing polypeptide in Escherichia coli: the fdhF gene product. | Q54682755 | ||
| De novoassembly of thePseudomonas syringaepv.syringaeB728a genome using Illumina/Solexa short sequence reads | Q57232319 | ||
| Escherichia coli protein synthesis initiation factor IF3 controls its own gene expression at the translational level in vivo | Q68994308 | ||
| Expression of the Escherichia coli pcnB gene is translationally limited using an inefficient start codon: a second chromosomal example of translation initiated at AUU | Q74311695 | ||
| Distinguishing the ORFs from the ELFs: short bacterial genes and the annotation of genomes | Q74486138 | ||
| Discrimination by Escherichia coli initiation factor IF3 against initiation on non-canonical codons relies on complementarity rules | Q77978004 | ||
| Identification of prokaryotic small proteins using a comparative genomic approach | Q30402418 | ||
| MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data | Q30578902 | ||
| Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a. | Q33248973 | ||
| Automated bacterial genome analysis and annotation | Q33255169 | ||
| Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions? | Q33351790 | ||
| Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization | Q33408048 | ||
| Evaluation of three automated genome annotations for Halorhabdus utahensis | Q33484176 | ||
| Missing genes in the annotation of prokaryotic genomes | Q33540869 | ||
| Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies | Q33558107 | ||
| AGeS: a software system for microbial genome sequence annotation | Q33847815 | ||
| Deletional bias and the evolution of bacterial genomes | Q33955011 | ||
| Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments | Q33972088 | ||
| EcoGene 3.0. | Q34314596 | ||
| Next-generation proteomics: towards an integrative view of proteome dynamics. | Q34315255 | ||
| Predicting statistical properties of open reading frames in bacterial genomes | Q34428101 | ||
| Thousands of missed genes found in bacterial genomes and their analysis with COMBREX. | Q34461802 | ||
| Large-scale prokaryotic gene prediction and comparison to genome annotation | Q34462831 | ||
| The nature and dynamics of bacterial genomes. | Q34504636 | ||
| Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. | Q34668657 | ||
| 'New uses for an Old Enzyme'--the Old Yellow Enzyme family of flavoenzymes | Q34675919 | ||
| Discovery and annotation of small proteins using genomics, proteomics, and computational approaches | Q34729677 | ||
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| AMIGene: Annotation of MIcrobial Genes | Q35208274 | ||
| Small open reading frames: current prediction techniques and future prospect. | Q35465100 | ||
| An integrative method for identifying the over-annotated protein-coding genes in microbial genomes | Q35570198 | ||
| P433 | issue | 11 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | automation | Q184199 |
| P304 | page(s) | 2030-2042 | |
| P577 | publication date | 2014-03-21 | |
| P1433 | published in | Journal of Bacteriology | Q478419 |
| P1476 | title | SearchDOGS bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes | |
| P478 | volume | 196 |
| Q50058097 | A novel short L-arginine responsive protein-coding gene (laoB) antiparallel overlapping to a CadC-like transcriptional regulator in Escherichia coli O157:H7 Sakai originated by overprinting. |
| Q60960290 | Comparative Analysis of Oomycete Genome Evolution Using the Oomycete Gene Order Browser (OGOB) |
| Q41141354 | Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome |
| Q94582132 | Escherichia coli Small Proteome |
| Q37293854 | Functional Annotations of Paralogs: A Blessing and a Curse |
| Q38998949 | Identification of Unannotated Small Genes in Salmonella |
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