Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?

scientific article

Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style? is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2014PLoSO...9j8522T
P356DOI10.1371/JOURNAL.PONE.0108522
P932PMC publication ID4182475
P698PubMed publication ID25268993
P5875ResearchGate publication ID266380160

P50authorPetar PujicQ54656839
Philippe NormandQ21503735
Claudine MédigueQ28322622
Raúl Riesco JarrínQ43197428
P2093author name stringMartha E Trujillo
Patricia Benito
Raúl Riesco
Yasuhiro Igarashi
Rodrigo Bacigalupe
P2860cites workMultiple rRNA operons are essential for efficient cell growth and sporulation as well as outgrowth in Bacillus subtilis.Q53093345
Lectin genes in the Frankia alni genome.Q54346525
Diverse bacteria associated with root nodules of spontaneous legumes in Tunisia and first report for nifH-like gene within the genera Microbacterium and Starkeya.Q54610031
Bacterial degradation of natural rubber: a privilege of actinomycetes?Q56069706
Microbial pectinolytic enzymes: A reviewQ56336528
Maklamicin, an Antibacterial Polyketide from an EndophyticMicromonosporaspQ56600905
Large-Scale Comparative Genomic Analyses of Cytoplasmic Membrane Transport Systems in ProkaryotesQ57007326
Transcription regulation and environmental adaptation in bacteriaQ57936057
[Degradation of cellulose by micromonospores]Q67659712
Symbiotic phenotypes and translocated effector proteins of the Mesorhizobium loti strain R7A VirB/D4 type IV secretion systemQ80832127
COLORIMETRIC ESTIMATION OF INDOLEACETIC ACIDQ83236127
The acetylene-ethylene assay for n(2) fixation: laboratory and field evaluationQ83242991
Identification of Four Genes from the Granaticin Biosynthetic Gene Cluster of Streptomyces violaceoruber Tue22 Involved in the Biosynthesis of L-Rhodinose.Q105195020
Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environmentsQ21092424
Complete Genome Structure of the Nitrogen-fixing Symbiotic Bacterium Mesorhizobium lotiQ22066064
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospectsQ24533556
Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonizationQ24644338
Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropicaQ24669895
Expansin mode of action on cell walls. Analysis of wall hydrolysis, stress relaxation, and bindingQ24673279
Two endogenous proteins that induce cell wall extension in plantsQ24675860
Accumulation of alpha,alpha-trehalose by Rhizobium bacteria and bacteroidsQ24676263
Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotesQ24814923
MaGe: a microbial genome annotation system supported by synteny resultsQ25257010
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequencesQ27860580
Evolutionary trees from DNA sequences: A maximum likelihood approachQ27860898
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony MethodsQ27860929
The siderophore pyoverdine of Pseudomonas syringae pv. tabaci 6605 is an intrinsic virulence factor in host tobacco infectionQ28493032
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeographyQ28764545
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)Q29547307
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangementQ29616598
Evolution in bacteria: evidence for a universal substitution rate in cellular genomesQ29618187
The age and diversification of the angiosperms re-revisitedQ29619385
Genomics of aerobic cellulose utilization systems in actinobacteriaQ31069163
Antitumor anthraquinones from an endophytic actinomycete Micromonospora lupini sp. nov.Q31111380
Micromonospora lupini sp. nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius.Q31138334
Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.Q33261161
Detection of siderophore production from several fungi and bacteria by a modification of chrome azurol S (CAS) agar plate assay.Q50517970
Role of the 4-phosphopantetheinyl transferase of Trichoderma virens in secondary metabolism and induction of plant defense responses.Q51858082
Comparative secretome analysis suggests low plant cell wall degrading capacity in Frankia symbiontsQ33316848
EDGAR: a software framework for the comparative analysis of prokaryotic genomesQ33449008
Experimental evolution of a plant pathogen into a legume symbiontQ33525006
Identification of rhtX and fptX, novel genes encoding proteins that show homology and function in the utilization of the siderophores rhizobactin 1021 by Sinorhizobium meliloti and pyochelin by Pseudomonas aeruginosa, respectivelyQ33551442
The genus Micromonospora is widespread in legume root nodules: the example of Lupinus angustifoliusQ33571746
Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638Q33582213
Significant natural product biosynthetic potential of actinorhizal symbionts of the genus frankia, as revealed by comparative genomic and proteomic analyses.Q33875171
Ultra-fast sequence clustering from similarity networks with SiLiX.Q33879784
Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grassesQ33904037
Loosening of plant cell walls by expansinsQ33919830
Protein secretion in gram-negative bacteria: transport across the outer membrane involves common mechanisms in different bacteriaQ33923560
Ascending migration of endophytic rhizobia, from roots to leaves, inside rice plants and assessment of benefits to rice growth physiologyQ34143030
Lupinacidin C, an inhibitor of tumor cell invasion from Micromonospora lupini.Q34158559
Comparative genomics reveals evidence of marine adaptation in Salinispora speciesQ34188651
Rational approaches to improving the isolation of endophytic actinobacteria from Australian native trees.Q34414336
A critical examination of the specificity of the salkowski reagent for indolic compounds produced by phytopathogenic bacteria.Q34422496
A walk into the LuxR regulators of Actinobacteria: phylogenomic distribution and functional diversityQ34442064
Comparative genomic and phylogenetic approaches to characterize the role of genetic recombination in mycobacterial evolutionQ34493970
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islandsQ34546996
Indole-3-acetic acid in microbial and microorganism-plant signalingQ34579604
Genomic basis for natural product biosynthetic diversity in the actinomycetesQ34711979
Occurrence of enzymes involved in biosynthesis of indole-3-acetic acid from indole-3-acetonitrile in plant-associated bacteria, Agrobacterium and RhizobiumQ34721671
Life in grasses: diazotrophic endophytesQ34747197
Properties of bacterial endophytes and their proposed role in plant growthQ34826657
Bacterial volatiles promote growth in ArabidopsisQ34961893
TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channelsQ35537097
Performance of the translational apparatus varies with the ecological strategies of bacteriaQ35759706
Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YXQ35855385
Genetic and biochemical analysis of protein export from Xanthomonas campestrisQ35943116
Cell-associated pectinolytic and cellulolytic enzymes in Rhizobium leguminosarum biovar trifoliiQ35959932
Nitrilase in biosynthesis of the plant hormone indole-3-acetic acid from indole-3-acetonitrile: cloning of the Alcaligenes gene and site-directed mutagenesis of cysteine residuesQ36040323
Type II secretion: from structure to functionQ36382676
Surface proteins of gram-positive bacteria and how they get thereQ36497104
Analysis of the endophytic actinobacterial population in the roots of wheat (Triticum aestivum L.) by terminal restriction fragment length polymorphism and sequencing of 16S rRNA clones.Q36933424
Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root NodulesQ37201402
Orphan LuxR regulators of quorum sensingQ37394877
What does it take to be a plant pathogen: genomic insights from Streptomyces species.Q37732017
New insights into the distribution of WXG100 protein secretion systems.Q37790289
Phylogenetic perspectives of nitrogen-fixing actinobacteriaQ37903743
Interaction of endophytic microbes with legumesQ37939711
Genome analyses highlight the different biological roles of cellulasesQ37977829
The role of flavonoids in the establishment of plant roots endosymbioses with arbuscular mycorrhiza fungi, rhizobia and Frankia bacteriaQ38009666
Bacterial chitinases and chitin-binding proteins as virulence factorsQ38091954
Indole-3-acetic acid in plant-microbe interactionsQ38180307
The re-emerging role of microbial natural products in antibiotic discoveryQ38219787
Numerical classification of Streptomyces and related generaQ38581972
Molecular characterization of genetic loci required for secretion of exoproducts in Burkholderia pseudomallei.Q39547468
Association of iss and iucA, but not tsh, with plasmid-mediated virulence of avian pathogenic Escherichia coliQ40206614
Non-Frankia actinomycetes isolated from surface-sterilized roots of Casuarina equisetifolia fix nitrogenQ40897721
Molecular cloning and characterization of 13 out genes from Erwinia carotovora subspecies carotovora: genes encoding members of a general secretion pathway (GSP) widespread in gram-negative bacteriaQ41503359
Genome sequence of Micromonospora lupini Lupac 08, isolated from root nodules of Lupinus angustifoliusQ41870301
Diversity of Micromonospora strains isolated from nitrogen fixing nodules and rhizosphere of Pisum sativum analyzed by multilocus sequence analysisQ42631154
Purification of the trehalase GMTRE1 from soybean nodules and cloning of its cDNA. GMTRE1 is expressed at a low level in multiple tissuesQ42691751
Naringenin regulates expression of genes involved in cell wall synthesis in Herbaspirillum seropedicae.Q42706465
Structure-function analysis of the bacterial expansin EXLX1.Q42728403
Cellulose degradation by micromonosporas recovered from freshwater lakes and classification of these actinomycetes by DNA gyrase B gene sequencingQ43242689
Identification of four genes from the granaticin biosynthetic gene cluster of Streptomyces violaceoruber Tü22 involved in the biosynthesis of L-rhodinoseQ43554347
Trehalose becomes the most abundant non-structural carbohydrate during senescence of soybean nodulesQ43658504
The ESX/type VII secretion system modulates development, but not virulence, of the plant pathogen Streptomyces scabiesQ44828572
Functional analysis of non-ribosomal peptide synthetases (NRPSs) in Trichoderma virens reveals a polyketide synthase (PKS)/NRPS hybrid enzyme involved in the induced systemic resistance response in maize.Q44832403
Down-regulation of PvTRE1 enhances nodule biomass and bacteroid number in the common beanQ44893531
Micromonospora is a normal occupant of actinorhizal nodules.Q46487157
Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp.Q47806445
The endo-beta-1,4-glucanase CelA of Clavibacter michiganensis subsp. michiganensis is a pathogenicity determinant required for induction of bacterial wilt of tomatoQ47848977
The role of pectate lyase and the jasmonic acid defense response in Pseudomonas viridiflava virulenceQ48081422
Type VII secretion--mycobacteria show the way.Q48689947
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue9
P407language of work or nameEnglishQ1860
P921main subjectendophyteQ260335
P304page(s)e108522
P577publication date2014-09-30
P1433published inPLOS OneQ564954
P1476titleGenome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?
P478volume9

Reverse relations

cites work (P2860)
Q28597724An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH
Q46256686Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium
Q57147560Complete Genome of Micromonospora sp. Strain B006 Reveals Biosynthetic Potential of a Lake Michigan Actinomycete
Q55504394Defining the Species Micromonospora saelicesensis and Micromonospora noduli Under the Framework of Genomics.
Q96304792Diving Into Reef Ecosystems for Land-Agriculture Solutions: Coral Microbiota Can Alleviate Salt Stress During Germination and Photosynthesis in Terrestrial Plants
Q26773138Endophytic Actinobacteria and the Interaction of Micromonospora and Nitrogen Fixing Plants
Q39208836Endophytic actinobacteria: Diversity, secondary metabolism and mechanisms to unsilence biosynthetic gene clusters
Q89583542Genome analysis of a wild rumen bacterium Enterobacter aerogenes LU2 - a novel bio-based succinic acid producer
Q58719422Genome-Based Taxonomic Classification of the Phylum
Q46707215Genome-based analysis of type-I polyketide synthase and nonribosomal peptide synthetase gene clusters in a novel strain taxonomically close to the genus Salinispora
Q48262869Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
Q40059557Monitoring the colonization and infection of legume nodules by Micromonospora in co-inoculation experiments with rhizobia
Q31154681Polysaccharide Degradation Capability of Actinomycetales Soil Isolates from a Semiarid Grassland of the Colorado Plateau
Q91787766Taxonomy and systematics of plant probiotic bacteria in the genomic era
Q36457919Taxonomy, Physiology, and Natural Products of Actinobacteria

Search more.