EDGAR: a software framework for the comparative analysis of prokaryotic genomes

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EDGAR: a software framework for the comparative analysis of prokaryotic genomes is …
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scholarly articleQ13442814
review articleQ7318358

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P8978DBLP publication IDjournals/bmcbi/BlomADPVZG09
P6179Dimensions Publication ID1002115720
P356DOI10.1186/1471-2105-10-154
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/1471-2105-10-154
P932PMC publication ID2696450
P698PubMed publication ID19457249
P5875ResearchGate publication ID24441484

P50authorAlfred PühlerQ1488595
Alexander GoesmannQ52422599
Martha ZakrzewskiQ56377449
Jochen BlomQ88525311
Frank-Jörg VorhölterQ47007077
P2093author name stringDaniel Doppmeier
Frank-Jörg Vorhölter
Stefan P Albaum
P2860cites workXanthan gum biosynthesis and application: a biochemical/genetic perspective.Q55068049
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Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome SequenceQ22065447
Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestrisQ22065748
50 Million Years of Genomic Stasis in Endosymbiotic BacteriaQ22065832
The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of riceQ22065983
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"Q22066389
Comparison of the genomes of two Xanthomonas pathogens with differing host specificitiesQ22122346
Inparanoid: a comprehensive database of eukaryotic orthologsQ24558576
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
Identifying bacterial genes and endosymbiont DNA with GlimmerQ24653724
Ensembl 2007Q24669862
Database resources of the National Center for Biotechnology InformationQ24683601
From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-ProteobacteriaQ24795892
xBASE, a collection of online databases for bacterial comparative genomicsQ25256939
Basic local alignment search toolQ25938991
OrthoMCL: Identification of Ortholog Groups for Eukaryotic GenomesQ27860860
A genomic perspective on protein familiesQ27860913
Increased taxon sampling greatly reduces phylogenetic errorQ28201637
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignmentsQ29547572
VISTA: computational tools for comparative genomicsQ29547708
CRITICA: coding region identification tool invoking comparative analysisQ29614364
Distinguishing Homologous from Analogous ProteinsQ29617777
eggNOG: automated construction and annotation of orthologous groups of genesQ30002345
Benchmarking ortholog identification methods using functional genomics dataQ31036627
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.Q33331470
A multilocus sequence analysis of the genus XanthomonasQ33368516
Phylogenetic and functional assessment of orthologs inference projects and methodsQ33400327
The microbial pan-genomeQ34453982
Roundup: a multi-genome repository of orthologs and evolutionary distancesQ34538669
The pan-genome: towards a knowledge-based discovery of novel targets for vaccines and antibacterialsQ34632125
MBGD: microbial genome database for comparative analysisQ35159357
Xanthan gum: production, recovery, and properties.Q35555202
Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenomeQ36314754
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidisQ36491155
GenDB--an open source genome annotation system for prokaryote genomesQ39747829
xBASE2: a comprehensive resource for comparative bacterial genomics.Q43032299
Comparison of AFLP and rep-PCR genomic fingerprinting with DNA--DNA homology studies: Xanthomonas as a model systemQ45314468
The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesisQ46730215
GeConT: gene context analysis.Q47794525
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P921main subjectsoftwareQ7397
software frameworkQ271680
P304page(s)154
P577publication date2009-05-20
P1433published inBMC BioinformaticsQ4835939
P1476titleEDGAR: a software framework for the comparative analysis of prokaryotic genomes
P478volume10

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