The importance of genome sequence quality to microbial comparative genomics

scientific article published on 20 August 2019

The importance of genome sequence quality to microbial comparative genomics is …
instance of (P31):
scholarly articleQ13442814
editorialQ871232

External links are
P356DOI10.1186/S12864-019-6014-5
P932PMC publication ID6701015
P698PubMed publication ID31429698

P50authorTheo H M SmitsQ88492638
P2860cites workPhylogenomics and comparative genomic studies delineate six main clades within the family Enterobacteriaceae and support the reclassification of several polyphyletic members of the familyQ46343290
A sequencer coming of age: De novo genome assembly using MinION reads.Q47704322
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A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencersQ21266698
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A novel plasmid pEA68 of Erwinia amylovora and the description of a new family of plasmids.Q30846985
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Draft Genome Sequence of Kluyvera intestini Strain GT-16 Isolated from the Stomach of a Patient with Gastric CancerQ39744067
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparisonQ39784985
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Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics.Q40785146
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomesQ40936712
Complete Genome Sequence of Pseudomonas viridiflava CFBP 1590, Isolated from Diseased Cherry in FranceQ41163885
Complete Genome Sequences of Three Isolates of Xanthomonas fragariae, the Bacterium Responsible for Angular Leaf Spots on Strawberry Plants.Q41355349
Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host InteractionsQ41889164
Draft Genome Sequence of the Commercial Biocontrol Strain Pantoea agglomerans P10c.Q42279422
Complete Genome Sequence of Kluyvera intestini sp. nov., Isolated from the Stomach of a Patient with Gastric CancerQ42620221
Emended description of the genus Phytobacter, its type species Phytobacter diazotrophicus (Zhang 2008) and description of Phytobacter ursingii sp. nov.Q45765098
BUSCO applications from quality assessments to gene prediction and phylogenomicsQ46245208
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectcomparative genomicsQ1147112
P304page(s)662
P577publication date2019-08-20
P1433published inBMC GenomicsQ15765854
P1476titleThe importance of genome sequence quality to microbial comparative genomics
P478volume20

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cites work (P2860)
Q99555879Antibiotic Resistance Characteristics of Pseudomonas aeruginosa Isolated from Keratitis in Australia and India
Q114868974Comparative Metabologenomics Analysis of Polar Actinomycetes
Q97883452Future of Probiotics and Prebiotics and the Implications for Early Career Researchers

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