| scholarly article | Q13442814 |
| P50 | author | Rafael A Baraúna | Q56961152 |
| Luis C. Guimarães | Q39510529 | ||
| P2093 | author name string | Artur Silva | |
| Siomar Castro Soares | |||
| Sávio Souza Costa | |||
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| Defining operational taxonomic units using DNA barcode data | Q24673720 | ||
| From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria | Q24795892 | ||
| Application of a Novel "Pan-Genome"-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains | Q27333878 | ||
| OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes | Q27860860 | ||
| An efficient algorithm for large-scale detection of protein families | Q28131838 | ||
| Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data | Q28256153 | ||
| Evaluation of gene-finding programs on mammalian sequences | Q28364386 | ||
| Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation | Q28603064 | ||
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| Prodigal: prokaryotic gene recognition and translation initiation site identification | Q29547611 | ||
| Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology | Q29614356 | ||
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| CD-HIT: accelerated for clustering the next-generation sequencing data | Q29616664 | ||
| Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes | Q29616745 | ||
| The ortholog conjecture is untestable by the current gene ontology but is supported by RNA sequencing data | Q30580058 | ||
| Lineage-specific gene expansions in bacterial and archaeal genomes | Q30662261 | ||
| EDGAR: a software framework for the comparative analysis of prokaryotic genomes | Q33449008 | ||
| Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions | Q33693333 | ||
| Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus | Q33719925 | ||
| PanDelos: a dictionary-based method for pan-genome content discovery | Q59798430 | ||
| Identification of Cross-Protective Potential Antigens against Pathogenic spp. through Combining Pan-Genome Analysis with Reverse Vaccinology | Q60907519 | ||
| The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity | Q60927714 | ||
| Genus-Wide Comparative Genomics Analysis of to Identify New Genes Associated with Pathogenicity and Niche Adaptation of Pathogens | Q61816834 | ||
| Genome and pan-genome analysis to classify emerging bacteria | Q64098942 | ||
| Resolving Phylogenetic Relationships for Streptococcus mitis and Streptococcus oralis through Core- and Pan-Genome Analyses | Q64121080 | ||
| Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes | Q88721056 | ||
| Publisher Correction: The Resistome, Mobilome, Virulome and Phylogenomics of Multidrug-Resistant Escherichia coli Clinical Isolates from Pretoria, South Africa | Q92825261 | ||
| Comparative Genomics of Bacillus amyloliquefaciens Strains Reveals a Core Genome with Traits for Habitat Adaptation and a Secondary Metabolites Rich Accessory Genome. | Q41222156 | ||
| The Mobilome; A Major Contributor to Escherichia coli stx2-Positive O26:H11 Strains Intra-Serotype Diversity | Q41439465 | ||
| Comparative genomics - a perspective | Q41816338 | ||
| MUMmer4: A fast and versatile genome alignment system | Q48159072 | ||
| panX: pan-genome analysis and exploration. | Q49186393 | ||
| Systematic discovery of antiphage defense systems in the microbial pangenome. | Q49680564 | ||
| Explaining microbial population genomics through phage predation. | Q51647339 | ||
| Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria. | Q52596129 | ||
| Horizontal Gene Transfer Building Prokaryote Genomes: Genes Related to Exchange Between Cell and Environment are Frequently Transferred. | Q53430596 | ||
| Pangenomic Definition of Prokaryotic Species and the Phylogenetic Structure of Prochlorococcus spp. | Q55092514 | ||
| Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes. | Q55436284 | ||
| PGAweb: A Web Server for Bacterial Pan-Genome Analysis | Q58729059 | ||
| Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer | Q58736812 | ||
| Pan-Genomic Study of Reflecting the Primary/Secondary Genes, Generality/Individuality, and the Interconversion Through Copy Number Variations | Q58769014 | ||
| A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life | Q59543717 | ||
| PanWeb: A web interface for pan-genomic analysis | Q33725008 | ||
| Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing. | Q33892877 | ||
| Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes | Q33901410 | ||
| The microbial pan-genome | Q34453982 | ||
| BPGA- an ultra-fast pan-genome analysis pipeline | Q34521907 | ||
| Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome | Q34557250 | ||
| The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains | Q34558774 | ||
| The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates | Q34803749 | ||
| Comparative genomics: the bacterial pan-genome | Q34905107 | ||
| Estimating the size of the bacterial pan-genome | Q34929379 | ||
| PGAT: a multistrain analysis resource for microbial genomes | Q35170101 | ||
| Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors. | Q35189201 | ||
| What It Takes to Be a Pseudomonas aeruginosa? The Core Genome of the Opportunistic Pathogen Updated | Q35626855 | ||
| PGAP: pan-genomes analysis pipeline | Q35708459 | ||
| Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species. | Q35891241 | ||
| The infinitely many genes model for the distributed genome of bacteria. | Q35930255 | ||
| Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity | Q37065104 | ||
| GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis | Q37335570 | ||
| KEGG: new perspectives on genomes, pathways, diseases and drugs | Q37556832 | ||
| A Novel Pan-Genome Reverse Vaccinology Approach Employing a Negative-Selection Strategy for Screening Surface-Exposed Antigens against leptospirosis | Q37697372 | ||
| Biological species are universal across Life's domains | Q37738555 | ||
| Marine viruses: truth or dare | Q37998041 | ||
| Developing vaccines in the era of genomics: a decade of reverse vaccinology. | Q38033700 | ||
| Pertussis leukocytosis: mechanisms, clinical relevance and treatment | Q38949809 | ||
| High Throughput Sequencing: An Overview of Sequencing Chemistry | Q38991994 | ||
| Cost analysis of whole genome sequencing in German clinical practice | Q39630048 | ||
| Roary: rapid large-scale prokaryote pan genome analysis | Q39769468 | ||
| Tracing the Enterococci from Paleozoic Origins to the Hospital | Q40213601 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial 4.0 International | Q34179348 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P304 | page(s) | 1177932220938064 | |
| P577 | publication date | 2020-08-07 | |
| P1433 | published in | Bioinformatics and Biology Insights | Q4914913 |
| P1476 | title | First Steps in the Analysis of Prokaryotic Pan-Genomes | |
| P478 | volume | 14 |
| Q116783877 | Nitrosophilus kaiyonis sp. nov., a hydrogen-, sulfur- and thiosulfate-oxidizing chemolithoautotroph within “Campylobacteria” isolated from a deep-sea hydrothermal vent in the Mid-Okinawa Trough | cites work | P2860 |
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