Calculating orthologs in bacteria and Archaea: a divide and conquer approach

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Calculating orthologs in bacteria and Archaea: a divide and conquer approach is …
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scholarly articleQ13442814

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P819ADS bibcode2011PLoSO...628388H
P356DOI10.1371/JOURNAL.PONE.0028388
P932PMC publication ID3236195
P698PubMed publication ID22174796
P5875ResearchGate publication ID51884754

P50authorMark PallenQ21038650
Nicholas J. LomanQ32643108
P2093author name stringMihail R Halachev
P2860cites workStructure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related speciesQ21184102
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Assessing performance of orthology detection strategies applied to eukaryotic genomesQ42025644
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Characterization of species-specific genes using a flexible, web-based querying systemQ42607405
Clustering of main orthologs for multiple genomesQ42660149
Automatic clustering of orthologs and inparalogs shared by multiple proteomes.Q48437338
The closest BLAST hit is often not the nearest neighbor.Q50114443
MSOAR: a high-throughput ortholog assignment system based on genome rearrangement.Q50869057
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Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.Q30738900
Automated ortholog inference from phylogenetic trees and calculation of orthology reliabilityQ30810365
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Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversificationQ33693993
Genomic fluidity: an integrative view of gene diversity within microbial populationsQ33792686
Deletional bias and the evolution of bacterial genomesQ33955011
Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species conceptQ34131691
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The microbial pan-genomeQ34453982
Roundup: a multi-genome repository of orthologs and evolutionary distancesQ34538669
The pan-genome: towards a knowledge-based discovery of novel targets for vaccines and antibacterialsQ34632125
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolatesQ34803749
Comparative genomics: the bacterial pan-genomeQ34905107
Estimating the size of the bacterial pan-genomeQ34929379
Twenty thousand ORFan microbial protein families for the biologist?Q35040915
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectArchaeaQ10872
P304page(s)e28388
P577publication date2011-12-12
P1433published inPLOS OneQ564954
P1476titleCalculating orthologs in bacteria and Archaea: a divide and conquer approach
P478volume6

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cites work (P2860)
Q33805179Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts.
Q35334249Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales
Q36554881PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database
Q41866629Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia
Q34558774The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains
Q64065326Within-Species Genomic Variation and Variable Patterns of Recombination in the Tetracycline Producer

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