Detection of internal repeats: how common are they?

scientific article published on June 1, 1998

Detection of internal repeats: how common are they? is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/S0959-440X(98)80068-7
P953full work available online athttps://api.elsevier.com/content/article/PII:S0959440X98800687?httpAccept=text/plain
https://api.elsevier.com/content/article/PII:S0959440X98800687?httpAccept=text/xml
P698PubMed publication ID9666330
P5875ResearchGate publication ID13619261

P2093author name stringJ. Heringa
P2860cites workMicrosatellite diversity and the demographic history of modern humansQ22066187
A human telomeric proteinQ24304466
Characteristic enrichment of DNA repeats in different genomesQ24641941
Crystal structure of a G-protein beta gamma dimer at 2.1A resolutionQ27732270
The crystal structure of the DNA-binding domain of yeast RAP1 in complex with telomeric DNAQ27732682
A transmembrane helix dimer: structure and implicationsQ27735013
SCOP: a structural classification of proteins database for the investigation of sequences and structuresQ27860689
Identification of common molecular subsequencesQ27860816
Predicting coiled coils from protein sequencesQ27861097
A novel Rap1p-interacting factor, Rif2p, cooperates with Rif1p to regulate telomere length in Saccharomyces cerevisiae.Q27932204
Gene duplications in the structural evolution of chymotrypsinQ28239251
Three-dimensional domain duplication, swapping and stealingQ28242376
FOG, a multitype zinc finger protein, acts as a cofactor for transcription factor GATA-1 in erythroid and megakaryocytic differentiationQ28244293
Gene families: the taxonomy of protein paralogs and chimerasQ28255362
The PH domain: a common piece in the structural patchwork of signalling proteinsQ28256159
Dynamic mutation: possible mechanisms and significance in human diseaseQ28256437
Autosomal dominant cerebellar ataxia (SCA6) associated with small polyglutamine expansions in the alpha 1A-voltage-dependent calcium channelQ28300848
Human chromosomal fragile site FRA16B is an amplified AT-rich minisatellite repeatQ28304011
Unstable minisatellite expansion causing recessively inherited myoclonus epilepsy, EPM1Q28307006
TLP1: a gene encoding a protein component of mammalian telomerase is a novel member of WD repeats familyQ28564535
Molecular evidence for an ancient duplication of the entire yeast genomeQ29547472
Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignmentQ29615323
Cytoplasmic signalling domains: the next generationQ30176461
A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structureQ30429158
SPRY domains in ryanodine receptors (Ca(2+)-release channels).Q34430836
A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ lineQ34448763
Folding of the N-terminal, ligand-binding region of integrin alpha-subunits into a beta-propeller domainQ35899468
A single zinc finger motif in the silencing factor REST represses the neural-specific type II sodium channel promoter.Q35990792
Triplet repeat polymorphism in the transmembrane region of the MICA gene: a strong association of six GCT repetitions with Behçet diseaseQ35995861
Positionally cloned human disease genes: patterns of evolutionary conservation and functional motifsQ36159638
Direct conversion of an oligopeptide from a beta-sheet to an alpha-helix: a model for amyloid formationQ36271463
Control of alternative pre-mRNA splicing by distributed pentameric repeatsQ36805493
(GT) Repetitive tracts affect several stages of RecA-promoted recombinationQ38341726
On the classification and evolution of protein modulesQ38556838
MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiationQ40392560
Recognition of telomeric DNA.Q41361760
Tudor domains in proteins that interact with RNA.Q41361779
Telomerase and telomere-binding proteins: controlling the endgame.Q41560700
RNA Structure Comes of AgeQ41595272
Multiple gene copies for bombyxin, an insulin-related peptide of the silkmoth Bombyx mori: structural signs for gene rearrangement and duplication responsible for generation of multiple molecular forms of bombyxinQ42064120
Huntingtin-encoded polyglutamine expansions form amyloid-like protein aggregates in vitro and in vivoQ45294913
HEAT repeats in the Huntington's disease proteinQ45307276
Sequence Alignment with Tandem DuplicationQ48044961
A repetitive sequence in subunits of the 26S proteasome and 20S cyclosome (anaphase-promoting complex).Q48049123
MIRs are present in coding regions of human genes.Q48055276
Hyperthermostable surface layer protein tetrabrachion from the archaebacterium Staphylothermus marinus: evidence for the presence of a right-handed coiled coil derived from the primary structureQ48064757
Characterization of the COL2A1 VNTR polymorphismQ48122994
Interaction of transmembrane helices by a knobs-into-holes packing characteristic of soluble coiled coilsQ52243202
The evolution and recognition of protein sequence repeatsQ52371903
A method to recognize distant repeats in protein sequencesQ52387751
Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the moduleQ54565622
The leucine zippers of the HLH-LZ proteins Max and c-Myc preferentially form heterodimersQ71786146
Short inverted repeats function as hotspots of intermolecular recombination giving rise to oligomers of deleted plastid DNAs (ptDNAs)Q73041346
A novel repeat sequence (CKRS-1) containing a tandemly repeated sub-element (kre) accounts for differences between Candida krusei strains fingerprinted with the probe CkF1,2Q73144291
Organisation and molecular analysis of repeated DNA sequences in the rice blast fungus Magnaporthe griseaQ73235026
The role of apo-(a) kringle-IVs in the assembly of lipoprotein-(a)Q73343063
The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat familiesQ73363175
Trinucleotide repeats affect DNA replication in vivoQ73839003
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectrepetitive DNAQ424473
nucleic acid tertiary structureQ3823894
P304page(s)338-45
P577publication date1998-06-01
P13046publication type of scholarly workreview articleQ7318358
P1433published inCurrent Opinion in Structural BiologyQ15758416
P1476titleDetection of internal repeats: how common are they?
P478volume8

Reverse relations

cites work (P2860)
Q51957900'Genomemark': detecting word periodicity in biological sequences
Q36282090Amino acid repeat patterns in protein sequences: their diversity and structural-functional implications
Q37144549An overview of multiple sequence alignment
Q28254744DOM-fold: a structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain
Q35122769Detection, characterization and evolution of internal repeats in Chitinases of known 3-D structure.
Q24645328Early vertebrate evolution of the TATA-binding protein, TBP
Q44038183Equilibrium folding and stability of myotrophin: a model ankyrin repeat protein
Q33517914Expansion of tandem repeats in sea anemone Nematostella vectensis proteome: A source for gene novelty?
Q43707469Large cryptic internal sequence repeats in protein structures from Homo sapiens
Q33424517Length variations amongst protein domain superfamilies and consequences on structure and function
Q52035893Local weighting schemes for protein multiple sequence alignment
Q47730212Major components of a sea urchin block to polyspermy are structurally and functionally conserved
Q41842494Multiple sequence alignment with user-defined anchor points
Q24624818Protein tandem repeats - the more perfect, the less structured
Q52074687Rapid automatic detection and alignment of repeats in protein sequences
Q42127516Remarkable sequence signatures in archaeal genomes
Q30394351Screening for clusters of charge in human virus proteomes
Q43185312Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family
Q30378558TAPO: A combined method for the identification of tandem repeats in protein structures.
Q39788075Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.
Q41615004Tandem repeats in proteins: From sequence to structure
Q90477261Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
Q35007386Tandem-repeat protein domains across the tree of life
Q52067999The REPRO server: finding protein internal sequence repeats through the Web.
Q24646394The ankyrin repeat as molecular architecture for protein recognition
Q54478418Three-dimensional solution structures of the chromodomains of cpSRP43.

Search more.