MC64-ClustalWP2: a highly-parallel hybrid strategy to align multiple sequences in many-core architectures

scientific article

MC64-ClustalWP2: a highly-parallel hybrid strategy to align multiple sequences in many-core architectures is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2014PLoSO...994044D
P356DOI10.1371/JOURNAL.PONE.0094044
P932PMC publication ID3977933
P698PubMed publication ID24710354
P5875ResearchGate publication ID261443898

P50authorAntonio Jesús Guevara PlazaQ58961698
P HernándezQ73227098
P2093author name stringDavid Díaz
Gabriel Dorado
Francisco J Esteban
Juan Antonio Caballero
Sergio Gálvez
P2860cites workRecent evolutions of multiple sequence alignment algorithmsQ21145665
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignmentQ21284191
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
Improved tools for biological sequence comparisonQ24652199
Basic local alignment search toolQ25938991
The neighbor-joining method: a new method for reconstructing phylogenetic treesQ25939010
Clustal W and Clustal X version 2.0Q27860517
A general method applicable to the search for similarities in the amino acid sequence of two proteinsQ27860563
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal OmegaQ27860809
Identification of common molecular subsequencesQ27860816
An improved algorithm for matching biological sequences.Q52712524
A linear space algorithm for computing maximal common subsequencesQ55891301
A Bioinfomatics Grid Alignment ToolkitQ58041567
ClustalW-MPI: ClustalW analysis using distributed and parallel computingQ73796419
T-Coffee: A novel method for fast and accurate multiple sequence alignmentQ27860999
CLUSTAL: a package for performing multiple sequence alignment on a microcomputerQ28293854
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNAQ28775786
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangementQ29616598
CLUSTAL V: improved software for multiple sequence alignmentQ29617279
Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithmsQ30444379
CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractionsQ30495608
Mind the gaps: progress in progressive alignmentQ33906802
Multiplex sequencing of seven ocular herpes simplex virus type-1 genomes: phylogeny, sequence variability, and SNP distributionQ34053075
Optimal alignments in linear spaceQ34177047
OpenCL: A Parallel Programming Standard for Heterogeneous Computing SystemsQ34244690
Varietal tracing of virgin olive oils based on plastid DNA variation profiling.Q34947096
Multiple sequence alignment by consensusQ35057685
An applications-focused review of comparative genomics tools: capabilities, limitations and future challengesQ35170760
Phylogenetic analysis of clinical herpes simplex virus type 1 isolates identified three genetic groups and recombinant virusesQ37511553
Cactus: Algorithms for genome multiple sequence alignmentQ38303696
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequencesQ39775703
MULTAN: a program to align multiple DNA sequencesQ40559315
Next-generation bioinformatics: using many-core processor architecture to develop a web service for sequence alignment.Q42646039
Aligning multiple whole genomes with Mercator and MAVID.Q44255740
Efficient multiple genome alignment.Q48625539
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectsequence alignmentQ827246
P304page(s)e94044
P577publication date2014-04-07
P1433published inPLOS OneQ564954
P1476titleMC64-ClustalWP2: a highly-parallel hybrid strategy to align multiple sequences in many-core architectures
P478volume9

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cites work (P2860)
Q35205155An improved distance matrix computation algorithm for multicore clusters
Q38464009Hippocampal Pruning as a New Theory of Schizophrenia Etiopathogenesis

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