Automatic assignment of EC numbers

scientific article

Automatic assignment of EC numbers is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/ploscb/EgelhoferSS10
P356DOI10.1371/JOURNAL.PCBI.1000661
P3181OpenCitations bibliographic resource ID1141798
P932PMC publication ID2813261
P698PubMed publication ID20126531
P5875ResearchGate publication ID41401536

P50authorDietmar SchomburgQ1223539
Volker EgelhoferQ57238579
P2093author name stringIda Schomburg
P2860cites workAutomatic determination of reaction mappings and reaction center information. 2. Validation on a biochemical reaction database.Q51876503
Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.Q52008917
The Universal Protein Resource (UniProt): an expanding universe of protein informationQ24538737
The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilitiesQ24655269
Ensembl 2007Q24669862
Entrez Gene: gene-centered information at NCBIQ24670011
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome DatabasesQ29615370
BRENDA: a resource for enzyme data and metabolic informationQ30670507
Metabolites: a helping hand for pathway evolution?Q33966772
Genomic analysis of regulatory network dynamics reveals large topological changesQ34348943
The Edinburgh human metabolic network reconstruction and its functional analysisQ36052649
Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactionsQ38418372
LIGAND: database of chemical compounds and reactions in biological pathwaysQ39524233
Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps.Q48328296
Automatic determination of reaction mappings and reaction center information. 1. The imaginary transition state energy approach.Q48340011
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectautomationQ184199
P304page(s)e1000661
P577publication date2010-01-29
P1433published inPLOS Computational BiologyQ2635829
P1476titleAutomatic assignment of EC numbers
P478volume6

Reverse relations

cites work (P2860)
Q28484647Assignment of EC numbers to enzymatic reactions with reaction difference fingerprints
Q35913364Characterising Complex Enzyme Reaction Data.
Q27162921EC-BLAST: a tool to automatically search and compare enzyme reactions
Q35106768ENZYMAP: exploiting protein annotation for modeling and predicting EC number changes in UniProt/Swiss-Prot
Q34245713EnzML: multi-label prediction of enzyme classes using InterPro signatures
Q38057006Enzyme informatics.
Q36607366Exploring the chemistry and evolution of the isomerases
Q34244212Is EC class predictable from reaction mechanism?
Q28552164Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering
Q28074539Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis
Q35696008RxnSim: a tool to compare biochemical reactions
Q55517907SimCAL: a flexible tool to compute biochemical reaction similarity.
Q28830284Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction
Q37864818Toward mechanistic classification of enzyme functions

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