Assignment of EC numbers to enzymatic reactions with reaction difference fingerprints

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Assignment of EC numbers to enzymatic reactions with reaction difference fingerprints is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2012PLoSO...752901H
P356DOI10.1371/JOURNAL.PONE.0052901
P3181OpenCitations bibliographic resource ID4527212
P932PMC publication ID3532301
P698PubMed publication ID23285222
P5875ResearchGate publication ID234041056

P50authorZixin DengQ89752891
P2093author name stringQian-Nan Hu
Zhe Deng
Hui Zhu
Manman Zhang
Xiaoyan Yang
Xiaobing Li
P2860cites workInvestigations of enzyme-catalyzed reactions based on physicochemical descriptors applied to hydrolases.Q51830047
Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.Q52008917
Structure-Based Classification of Chemical Reactions without Assignment of Reaction CentersQ56977881
Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation PathwaysQ57239742
SyGMa: combining expert knowledge and empirical scoring in the prediction of metabolitesQ80800702
RxnFinder: biochemical reaction search engines using molecular structures, molecular fragments and reaction similarityQ84553002
KEGG for linking genomes to life and the environmentQ24650347
Automatic assignment of EC numbersQ28472696
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanismsQ28539756
COMDECOM: predicting the lifetime of screening compounds in DMSO solutionQ33456635
Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactionsQ38418372
E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairsQ41943743
Using reaction mechanism to measure enzyme similarity.Q42544552
Assignment of EC numbers to enzymatic reactions with MOLMAP reaction descriptors and random forests.Q45963611
Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.Q45964994
Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps.Q48328296
Automatic assignment of reaction operators to enzymatic reactions.Q48667761
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue12
P407language of work or nameEnglishQ1860
P304page(s)e52901
P577publication date2012-01-01
P1433published inPLOS OneQ564954
P1476titleAssignment of EC numbers to enzymatic reactions with reaction difference fingerprints
P478volume7

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cites work (P2860)
Q35261034A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks
Q47345842Chemical reaction vector embeddings: towards predicting drug metabolism in the human gut microbiome
Q90144748Development and Application of a Data-Driven Reaction Classification Model: Comparison of an Electronic Lab Notebook and Medicinal Chemistry Literature
Q64056816Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites
Q46635197Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path
Q28074539Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis
Q88669813Methylglucosylation of aromatic amino and phenolic moieties of drug-like biosynthons by combinatorial biosynthesis
Q55517907SimCAL: a flexible tool to compute biochemical reaction similarity.

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