Proteome-wide prediction of protein-protein interactions from high-throughput data

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Proteome-wide prediction of protein-protein interactions from high-throughput data is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1042036148
P356DOI10.1007/S13238-012-2945-1
P932PMC publication ID4875394
P698PubMed publication ID22729399

P2093author name stringLuonan Chen
Zhi-Ping Liu
P2860cites workUnequal evolutionary conservation of human protein interactions in interologous networksQ21092867
Finding and evaluating community structure in networksQ21563748
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequenceQ22122411
Toward an understanding of the protein interaction network of the human liverQ24292988
Global landscape of HIV-human protein complexesQ24300336
Network organization of the human autophagy systemQ24324004
KEGG: kyoto encyclopedia of genes and genomesQ24515297
BioGRID: a general repository for interaction datasetsQ24538650
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Multiple sequence alignment with the Clustal series of programsQ24672842
STRING 7--recent developments in the integration and prediction of protein interactionsQ24675384
NCBI GEO: mining tens of millions of expression profiles--database and tools updateQ24675443
MINT: the Molecular INTeraction databaseQ24675827
The human disease networkQ24678240
SCOPPI: a structural classification of protein-protein interfacesQ25255780
Correlated mutations and residue contacts in proteinsQ25891592
Network biology: understanding the cell's functional organizationQ27861027
Protein interaction mapping in C. elegans using proteins involved in vulval developmentQ28141447
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiaeQ28203878
The Database of Interacting Proteins: 2004 updateQ28234998
Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogsQ28264442
The IntAct molecular interaction database in 2010Q28749230
Reactome: a knowledge base of biologic pathways and processesQ28757721
Assigning protein functions by comparative genome analysis: Protein phylogenetic profilesQ29039336
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfacesQ29302186
A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic DataQ29395063
Network motifs: simple building blocks of complex networksQ29547340
Human Protein Reference Database--2009 updateQ29547392
Evidence for dynamically organized modularity in the yeast protein-protein interaction networkQ29614449
Protein interaction maps for complete genomes based on gene fusion eventsQ29616048
Conservation of gene order: a fingerprint of proteins that physically interactQ29616049
BIND: the Biomolecular Interaction Network DatabaseQ29616859
IntAct--open source resource for molecular interaction dataQ29617575
Protein interaction networks from yeast to humanQ30002395
Prediction of protein-protein interactions by docking methods.Q30329611
Relating whole-genome expression data with protein-protein interactionsQ30669147
Inferring strengths of protein-protein interactions from experimental data using linear programmingQ30881837
In silico two-hybrid system for the selection of physically interacting protein pairs.Q54547905
Conserved clusters of functionally related genes in two bacterial genomes.Q54574568
Similarity of phylogenetic trees as indicator of protein–protein interactionQ55035526
Computational Prediction of Protein–Protein InteractionsQ57009010
Modeling Biomolecular Networks in CellsQ57602323
Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusionQ73035327
DIPOS: database of interacting proteins in Oryza sativaQ84465677
Inferring protein interactions from experimental data by association probabilistic methodQ31028667
Predicting protein-protein interaction by searching evolutionary tree automorphism spaceQ33217293
Assessing the limits of genomic data integration for predicting protein networksQ33218311
Analysis on multi-domain cooperation for predicting protein-protein interactionsQ33302713
Predicting gene ontology functions from protein's regional surface structuresQ33309502
Protein function in the post-genomic era.Q33906809
Dissecting spatio-temporal protein networks driving human heart development and related disordersQ34033622
Correlated sequence-signatures as markers of protein-protein interactionQ34087861
Identification of dysfunctional modules and disease genes in congenital heart disease by a network-based approachQ34089404
Computational methods for the prediction of protein interactionsQ34139922
Inferring high-confidence human protein-protein interactionsQ34257665
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.Q34272624
The MIPS mammalian protein-protein interaction databaseQ34365947
Predicting protein-protein interactions based only on sequences informationQ35721356
Identifying disease genes and module biomarkers by differential interactionsQ35751276
Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkersQ35859609
Prediction of physical protein-protein interactionsQ36276666
Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequencesQ36676452
Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic speciesQ36972115
Protein networks in diseaseQ37125547
EcID. A database for the inference of functional interactions in E. coliQ37202545
Network-based analysis of complex diseasesQ37987552
A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiaeQ39097859
Predicting protein function by genomic context: quantitative evaluation and qualitative inferencesQ40414366
Co-evolution of proteins with their interaction partnersQ41742351
The Negatome database: a reference set of non-interacting protein pairsQ41895237
Coexpression network analysis in chronic hepatitis B and C hepatic lesions reveals distinct patterns of disease progression to hepatocellular carcinomaQ42978926
Tissue specificity and the human protein interaction networkQ43125316
FPPI: Fusarium graminearum protein-protein interaction databaseQ43293252
Prediction of protein-RNA binding sites by a random forest method with combined featuresQ44004039
Gaining confidence in high-throughput protein interaction networksQ44011845
A discriminative approach for identifying domain-domain interactions from protein-protein interactionsQ45402219
Prediction of hot spots in protein interfaces using a random forest model with hybrid features.Q45960983
HPID: the Human Protein Interaction DatabaseQ46533870
Correlation between gene expression profiles and protein-protein interactions within and across genomes.Q48493508
Prediction of protein interaction sites from sequence profile and residue neighbor listQ49265986
Identification of functional links between genes using phylogenetic profilesQ50790966
Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patientsQ51601187
Use of contiguity on the chromosome to predict functional coupling.Q51642809
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectprotein-protein interactionQ896177
P304page(s)508-520
P577publication date2012-06-22
P1433published inProtein & CellQ26854012
P1476titleProteome-wide prediction of protein-protein interactions from high-throughput data
P478volume3

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cites work (P2860)
Q57817432Accurate Prediction of ncRNA-Protein Interactions From the Integration of Sequence and Evolutionary Information
Q89174572Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features
Q61799635Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
Q48687262Interactive protein network of FXIII-A1 in lipid rafts of activated and non-activated platelets
Q41744338LocFuse: human protein-protein interaction prediction via classifier fusion using protein localization information.
Q45959110PPIevo: protein-protein interaction prediction from PSSM based evolutionary information.
Q35607697Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs
Q41717369Protein-Protein Interactions as New Targets for Ion Channel Drug Discovery.
Q87988033Protein-protein interaction network of the marine microalga Tetraselmis subcordiformis: prediction and application for starch metabolism analysis
Q27027554Protein-protein interaction networks: probing disease mechanisms using model systems
Q30943430Reverse Engineering of Genome-wide Gene Regulatory Networks from Gene Expression Data
Q36847179SAAMBE: Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations
Q46101705SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome
Q30363264Structural bioinformatics of the interactome.
Q39412615TRI_tool: a web-tool for prediction of protein-protein interactions in human transcriptional regulation.
Q26770343The biochemical and mass spectrometric profiling of the dystrophin complexome from skeletal muscle
Q38125039Towards a detailed atlas of protein–protein interactions
Q35174044Using network clustering to predict copy number variations associated with health disparities

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