MINT: the Molecular INTeraction database

scientific article

MINT: the Molecular INTeraction database is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/nar/Chatr-aryamontriCMNSCC07
P356DOI10.1093/NAR/GKL950
P3181OpenCitations bibliographic resource ID818030
P932PMC publication ID1751541
P698PubMed publication ID17135203
P5875ResearchGate publication ID6663917

P50authorGianni CesareniQ30158398
Luisa CastagnoliQ30158401
Andrew Chatr-AryamontriQ30303518
Arnaud CeolQ54188165
Maria Victoria SchneiderQ56477007
P2093author name stringGiuliano Nardelli
Luisa Montecchi Palazzi
P2860cites workMPact: the MIPS protein interaction resource on yeastQ24538008
IntAct: an open source molecular interaction databaseQ24600582
The Biomolecular Interaction Network Database and related tools 2005 updateQ24794410
The Database of Interacting Proteins: 2004 updateQ28234998
MINT: a Molecular INTeraction databaseQ29618559
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction dataQ29618643
HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organismsQ33229367
P433issueDatabase issue
P407language of work or nameEnglishQ1860
P921main subjectdatabaseQ8513
molecular interactionQ33059490
P304page(s)D572-4
P577publication date2007-01-01
P1433published inNucleic Acids ResearchQ135122
P1476titleMINT: the Molecular INTeraction database
P478volume35

Reverse relations

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Q35753618Network Modules of the Cross-Species Genotype-Phenotype Map Reflect the Clinical Severity of Human Diseases
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Q33755632Network analysis of human protein location.
Q28751567Network integration and graph analysis in mammalian molecular systems biology
Q41791009Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability
Q26751123Network-Based Protein Biomarker Discovery Platforms
Q36713985Network-based global inference of human disease genes
Q55260352Network-based machine learning and graph theory algorithms for precision oncology.
Q37901985Network-based methods for human disease gene prediction
Q28755491Next generation tools for the annotation of human SNPs
Q82774858Nine steps to proteomic wisdom: A practical guide to using protein‐protein interaction networks and molecular pathways as a framework for interpreting disease proteomic profiles
Q33934588Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme
Q37960187Novel antimalarial drug targets: hope for new antimalarial drugs.
Q28473987Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures
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Q38066338On the functional and structural characterization of hubs in protein–protein interaction networks
Q41847454Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information
Q21183901Overview of the protein-protein interaction annotation extraction task of BioCreative II
Q34384755PATRIC, the bacterial bioinformatics database and analysis resource
Q34530521PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset
Q33957623PCFamily: a web server for searching homologous protein complexes
Q52723261PCLPred: A Bioinformatics Method for Predicting Protein-Protein Interactions by Combining Relevance Vector Machine Model with Low-Rank Matrix Approximation
Q28248545PIAS proteins: pleiotropic interactors associated with SUMO
Q24656193PID: the Pathway Interaction Database
Q37202592PIPs: human protein-protein interaction prediction database
Q37245673PPISearch: a web server for searching homologous protein-protein interactions across multiple species.
Q58737310PPInS: a repository of protein-protein interaction sitesbase
Q33605439PPLook: an automated data mining tool for protein-protein interaction
Q30649415PRIMOS: An Integrated Database of Reassessed Protein–Protein Interactions Providing Web-Based Access toIn SilicoValidation of Experimentally Derived Data
Q33901481PRIN: a predicted rice interactome network
Q92131450PS-MCL: parallel shotgun coarsened Markov clustering of protein interaction networks
Q33745661Patterns of human gene expression variance show strong associations with signaling network hierarchy
Q30444431PepBank--a database of peptides based on sequence text mining and public peptide data sources
Q38777121PhosD: inferring kinase-substrate interactions based on protein domains
Q43032227Phospho.ELM: a database of phosphorylation sites--update 2008.
Q30653810PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data
Q38512929PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database.
Q33516895Phylogeny-guided interaction mapping in seven eukaryotes
Q36491280PrePPI: a structure-informed database of protein–protein interactions
Q30481763Predicting cancer involvement of genes from heterogeneous data
Q38474935Predicting disease-related proteins based on clique backbone in protein-protein interaction network
Q34018348Predicting genetic modifier loci using functional gene networks
Q51608115Predicting meiotic pathways in human fetal oogenesis.
Q35621798Predicting peptide-mediated interactions on a genome-wide scale
Q45729681Predicting potential cancer genes by integrating network properties, sequence features and functional annotations
Q33475984Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
Q34045874Prediction and characterization of protein-protein interaction network in Bacillus licheniformis WX-02.
Q42254240Prediction and comparison of Salmonella-human and Salmonella-Arabidopsis interactomes
Q47169537Prediction of cassava protein interactome based on interolog method
Q33374636Prediction of evolutionarily conserved interologs in Mus musculus.
Q38968261Presence and utility of intrinsically disordered regions in kinases
Q27337213Probing the extent of randomness in protein interaction networks
Q34121939Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry
Q44209530Progress in Detecting Genetic Alterations and Their Association with Human Disease
Q39279493Protein interaction network for Alzheimer's disease using computational approach.
Q38010662Protein interaction networks in medicine and disease
Q37125547Protein networks in disease
Q21093159Protein stickiness, rather than number of functional protein-protein interactions, predicts expression noise and plasticity in yeast
Q38201472Protein-protein interaction detection: methods and analysis
Q87988033Protein-protein interaction network of the marine microalga Tetraselmis subcordiformis: prediction and application for starch metabolism analysis
Q30002405Protein-protein interactions: analysis and prediction
Q33797864Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology
Q33792433Proteogenomic convergence for understanding cancer pathways and networks
Q48157588Proteome analysis of microtubule-associated proteins and their interacting partners from mammalian brain.
Q42673758Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
Q34315933Proteome-wide prediction of protein-protein interactions from high-throughput data
Q35192019Proteomics analysis of the non-muscle myosin heavy chain IIa-enriched actin-myosin complex reveals multiple functions within the podocyte
Q26752031Proteomics-Based Analysis of Protein Complexes in Pluripotent Stem Cells and Cancer Biology
Q36884872Proteomics-Based Methods for Discovery, Quantification, and Validation of Protein–Protein Interactions
Q39088285Proteomics: Technologies and Their Applications.
Q39682618Proximity biotinylation provides insight into the molecular composition of focal adhesions at the nanometer scale
Q36696387Public databases and software for the pathway analysis of cancer genomes.
Q33497895Pushing structural information into the yeast interactome by high-throughput protein docking experiments
Q34486361Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models
Q38320402RETRACTED: Protein–protein interaction and SNP analysis in intraductal papillary mucinous neoplasm
Q33801141Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
Q56976177Recurated protein interaction datasets
Q24607576RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans
Q33527129Relationship between operon preference and functional properties of persistent genes in bacterial genomes
Q44105872Review of computational methods for virus-host protein interaction prediction: a case study on novel Ebola-human interactions
Q26748815Review on Graph Clustering and Subgraph Similarity Based Analysis of Neurological Disorders
Q44324983Rewiring the dynamic interactome
Q37327692Rich can get poor: conversion of hub to non-hub proteins
Q36408648Robust co-regulation of tyrosine phosphorylation sites on proteins reveals novel protein interactions
Q33619990Role for protein-protein interaction databases in human genetics
Q37245782SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks
Q46101705SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome
Q21245515SRC Homology 2 Domain Binding Sites in Insulin, IGF-1 and FGF receptor mediated signaling networks reveal an extensive potential interactome
Q24656073STRING 8--a global view on proteins and their functional interactions in 630 organisms
Q28534896Searching for synergies: matrix algebraic approaches for efficient pair screening
Q37190547Searching the MINT database for protein interaction information
Q36973024Selected reaction monitoring for quantitative proteomics: a tutorial
Q34348473Sets2Networks: network inference from repeated observations of sets
Q35497604Shared Molecular Strategies of the Malaria Parasite P. falciparum and the Human Virus HIV-1
Q34094403Simple and efficient machine learning frameworks for identifying protein-protein interaction relevant articles and experimental methods used to study the interactions
Q37388978Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.
Q55323717Stratification of candidate genes for Parkinson's disease using weighted protein-protein interaction network analysis.
Q33957649Struct2Net: a web service to predict protein-protein interactions using a structure-based approach
Q35563008Structural analysis of hubs in human NR-RTK network
Q35682066Structural and functional protein network analyses predict novel signaling functions for rhodopsin
Q37408736Swimming upstream: identifying proteomic signals that drive transcriptional changes using the interactome and multiple "-omics" datasets
Q43737767Systematic identification of common functional modules related to heart failure with different etiologies
Q47397587Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches
Q38056560Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks
Q60044703Systems biology analysis reveals new insights into invasive lung cancer
Q34111154Systems pharmacology of arrhythmias
Q54382772Testicular Gene Expression in Cryptorchid Boys at Risk of Azoospermia
Q33318567The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Q28257199The BioGRID Interaction Database: 2008 update
Q28298160The BioGRID Interaction Database: 2011 update
Q27987775The BioPAX community standard for pathway data sharing
Q56879922The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer
Q44625988The FEBS Letters SDA corpus: a collection of protein interaction articles with high quality annotations for the BioCreative II.5 online challenge and the text mining community
Q55053412The FEBS Letters/BioCreative II.5 experiment: making biological information accessible.
Q28749230The IntAct molecular interaction database in 2010
Q33947399The SH2 domain interaction landscape
Q24604825The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods
Q24597904The draft genome of the parasitic nematode Trichinella spiralis
Q36842925The hard cell: from proteomics to a whole cell model
Q47259036The integration of weighted gene association networks based on information entropy
Q22241275The interactome: Predicting the protein-protein interactions in cells
Q36905469The minimum information required for reporting a molecular interaction experiment (MIMIx).
Q30000800The potential of text mining in data integration and network biology for plant research: a case study on Arabidopsis
Q38478647The prediction of candidate genes for cervix related cancer through gene ontology and graph theoretical approach
Q33556023The publication and database deposition of molecular interaction data
Q33787253The role of exon shuffling in shaping protein-protein interaction networks
Q41686348Three-dimensional eukaryotic genomic organization is strongly correlated with codon usage expression and function
Q43704065Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network
Q33325735Topological comparison of methods for predicting transcriptional cooperativity in yeast.
Q34181781Toward a complete in silico, multi-layered embryonic stem cell regulatory network
Q56889970Toward a systems level view of the ECM and related proteins: a framework for the systematic definition and analysis of biological systems
Q37087531Towards a molecular characterisation of pathological pathways.
Q33968205Towards inferring time dimensionality in protein-protein interaction networks by integrating structures: the p53 example
Q38339130Towards prediction and prioritization of disease genes by the modularity of human phenome-genome assembled network
Q33646212Transcriptional regulatory networks underlying the reprogramming of spermatogonial stem cells to multipotent stem cells
Q34146799Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants
Q37890142Transient protein-protein interactions.
Q24316361Tumor suppressor density-enhanced phosphatase-1 (DEP-1) inhibits the RAS pathway by direct dephosphorylation of ERK1/2 kinases
Q36920168Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks
Q90613141Understanding of Zaire ebolavirus-human protein interaction for drug repurposing
Q33559087Use of Graph Database for the Integration of Heterogeneous Biological Data
Q21145334Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data
Q40146686Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions.
Q36795657Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint
Q30844536Using data fusion for scoring reliability of protein-protein interactions.
Q27336465Using existing drugs as leads for broad spectrum anthelmintics targeting protein kinases
Q28292614Utopia documents: linking scholarly literature with research data
Q24656219VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks
Q34599520VirusMINT: a viral protein interaction database
Q34426308What evidence is there for the homology of protein-protein interactions?
Q28710493Wiki-pi: a web-server of annotated human protein-protein interactions to aid in discovery of protein function
Q36491558dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications
Q21093638iRefIndex: a consolidated protein interaction database with provenance
Q34041069iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex
Q33715913iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence
Q34551668mirTarPri: improved prioritization of microRNA targets through incorporation of functional genomics data
Q33461944myGRN: a database and visualisation system for the storage and analysis of developmental genetic regulatory networks
Q33513746pISTil: a pipeline for yeast two-hybrid Interaction Sequence Tags identification and analysis.

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