Automatic query generation using word embeddings for retrieving passages describing experimental methods

scientific article published on 10 January 2017

Automatic query generation using word embeddings for retrieving passages describing experimental methods is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/biodb/AydinHO17
P356DOI10.1093/DATABASE/BAW166
P932PMC publication ID5225401
P698PubMed publication ID28077568

P50authorArzucan ÖzgürQ103329940
P2093author name stringZehra Melce Hüsünbeyi
Ferhat Aydın
P2860cites workDetection of interaction articles and experimental methods in biomedical literatureQ34094536
Manual curation is not sufficient for annotation of genomic databasesQ34655326
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challengeQ34844839
BioC: a minimalist approach to interoperability for biomedical text processingQ34992074
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactionsQ35185481
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.Q36121943
Agreement, the f-measure, and reliability in information retrievalQ41834261
Supervised and traditional term weighting methods for automatic text categorization.Q51851348
Developing a Robust Part-of-Speech Tagger for Biomedical TextQ56851545
Overview of BioCreAtIvE: critical assessment of information extraction for biologyQ21093643
Overview of the protein-protein interaction annotation extraction task of BioCreative IIQ21183901
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine OntologyQ21198686
The DEAD-box helicase DDX3X is a critical component of the TANK-binding kinase 1-dependent innate immune responseQ24336273
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactionsQ24548456
IntAct: an open source molecular interaction databaseQ24600582
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene functionQ24646439
MINT: the Molecular INTeraction databaseQ24675827
Nuclear import of the transcription factor SHOOT MERISTEMLESS depends on heterodimerization with BLH proteins expressed in discrete sub-domains of the shoot apical meristem of Arabidopsis thalianaQ25255619
The BioGRID interaction database: 2015 updateQ28252221
OntoGene in BioCreative IIQ28756938
BIND: the Biomolecular Interaction Network DatabaseQ29616859
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction dataQ29618643
A protein-dependent side-chain rotamer library.Q30413617
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full textQ30504572
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactionsQ33302066
A comprehensive benchmark of kernel methods to extract protein-protein interactions from literatureQ33628849
The G protein-coupled receptors in the pufferfish Takifugu rubripes.Q33826972
Protein-protein interactions: methods for detection and analysisQ34058635
Overview of the BioCreative III WorkshopQ34094362
Simple and efficient machine learning frameworks for identifying protein-protein interaction relevant articles and experimental methods used to study the interactionsQ34094403
Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literatureQ34094453
A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literatureQ34094505
P921main subjectautomationQ184199
word embeddingQ18395344
P577publication date2017-01-10
P1433published inDatabaseQ5227381
P1476titleAutomatic query generation using word embeddings for retrieving passages describing experimental methods
P478volume2017

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cites work (P2860)
Q47322390BIOSSES: a semantic sentence similarity estimation system for the biomedical domain
Q36121943BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.
Q47123756Improving average ranking precision in user searches for biomedical research datasets
Q64110335Linking entities through an ontology using word embeddings and syntactic re-ranking

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