Kiwi: a tool for integration and visualization of network topology and gene-set analysis

scientific article published on 11 December 2014

Kiwi: a tool for integration and visualization of network topology and gene-set analysis is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/VaremoGN14
P6179Dimensions Publication ID1033904391
P356DOI10.1186/S12859-014-0408-9
P932PMC publication ID4269931
P698PubMed publication ID25496126
P5875ResearchGate publication ID269720354

P50authorJens B. NielsenQ16733372
Francesco GattoQ55319005
Leif VäremoQ38324511
P2860cites workGene ontology: tool for the unification of biologyQ23781406
Network biology: understanding the cell's functional organizationQ27861027
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene listsQ29615019
Pathview: an R/Bioconductor package for pathway-based data integration and visualizationQ30641811
BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics dataQ30813620
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networksQ33318960
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.Q33722800
Enrichment map: a network-based method for gene-set enrichment visualization and interpretationQ33749961
Uncovering transcriptional regulation of metabolism by using metabolic network topologyQ33863545
GLAMM: Genome-Linked Application for Metabolic MapsQ34188353
Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinomaQ34405226
Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methodsQ34601554
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis toolQ34668270
Gene set enrichment analysis: performance evaluation and usage guidelines.Q35977457
Oncogenic Kras maintains pancreatic tumors through regulation of anabolic glucose metabolismQ36319414
iPath2.0: interactive pathway explorerQ41933346
HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.Q42144067
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.Q42552965
Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver diseaseQ45745547
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesCytoscapeQ3699942
P304page(s)408
P577publication date2014-12-11
P1433published inBMC BioinformaticsQ4835939
P1476titleKiwi: a tool for integration and visualization of network topology and gene-set analysis
P478volume15

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cites work (P2860)
Q47382771Comparison of the metabolic response to over-production of p-coumaric acid in two yeast strains.
Q101226497Evolution from adherent to suspension: systems biology of HEK293 cell line development
Q38797329Genome scale metabolic modeling of cancer
Q42269096The yeast osmostress response is carbon source dependent
Q33726611Type 2 diabetes and obesity induce similar transcriptional reprogramming in human myocytes

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