Intermolecular β-strand networks avoid hub residues and favor low interconnectedness: a potential protection mechanism against chain dissociation upon mutation

scientific article

Intermolecular β-strand networks avoid hub residues and favor low interconnectedness: a potential protection mechanism against chain dissociation upon mutation is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2014PLoSO...994745F
P356DOI10.1371/JOURNAL.PONE.0094745
P932PMC publication ID3986249
P698PubMed publication ID24733378
P5875ResearchGate publication ID261736286

P2093author name stringGiovanni Feverati
Claire Lesieur
Laurent Vuillon
Mounia Achoch
P2860cites workSteiner minimal trees, twist angles, and the protein folding problemQ51093482
Beta-sheet capping: signals that initiate and terminate beta-sheet formation.Q51900395
The Role of the Hinge Loop in Domain SwappingQ57951889
Measurement of the β-sheet-forming propensities of amino acidsQ59069627
Structural comparison of mouse and human α-synuclein amyloid fibrils by solid-state NMRQ83933589
The Protein Data BankQ24515306
The FoldX web server: an online force fieldQ24530376
Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregationQ24530946
The 3D profile method for identifying fibril-forming segments of proteinsQ24545011
Structural classification of proteins and structural genomics: new insights into protein folding and evolutionQ24632298
3D domain swapping: a mechanism for oligomer assemblyQ24675333
Classes of small-world networksQ24676405
Topology of Evolving Networks: Local Events and UniversalityQ27348954
Following evolutionary paths to protein-protein interactions with high affinity and selectivityQ27657425
SCOP: a structural classification of proteins database for the investigation of sequences and structuresQ27860689
Network biology: understanding the cell's functional organizationQ27861027
The atomic structure of protein-protein recognition sitesQ27861113
Protein misfolding, evolution and diseaseQ28143452
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteinsQ28281645
A structural model for Alzheimer's beta -amyloid fibrils based on experimental constraints from solid state NMRQ28387681
Oligomeric interfaces under the lens: geminiQ28473437
Beta-strand interfaces of non-dimeric protein oligomers are characterized by scattered charged residue patternsQ28482180
Error and attack tolerance of complex networksQ29547268
Common structure of soluble amyloid oligomers implies common mechanism of pathogenesisQ29547501
A hot spot of binding energy in a hormone-receptor interfaceQ29547547
Unraveling hot spots in binding interfaces: progress and challengesQ29614463
Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutationsQ29615143
Data growth and its impact on the SCOP database: new developmentsQ29619285
A rivet model for channel formation by aerolysin-like pore-forming toxinsQ30159950
Amyloid fibril formation by an SH3 domainQ30176202
Uncovering network systems within protein structures.Q30336273
Amino acid pairing preferences in parallel beta-sheets in proteins.Q30352136
Sequence determinants of amyloid fibril formationQ30502750
Insight into the structure of amyloid fibrils from the analysis of globular proteinsQ33266804
Prediction of amyloidogenic and disordered regions in protein chainsQ33267899
Characterization of protein-protein interaction interfaces from a single speciesQ33954665
De novo designed peptide-based amyloid fibrilsQ34415376
Structural insights into a yeast prion illuminate nucleation and strain diversityQ34425023
Serpinopathies and the conformational dementiasQ34932013
Template-assisted filament growth by parallel stacking of tau.Q36671491
The supramolecular chemistry of β-sheetsQ36811839
A dataset of protein-protein interfaces generated with a sequence-order-independent comparison techniqueQ36813890
Unfolding, aggregation, and amyloid formation by the tetramerization domain from mutant p53 associated with lung cancerQ36876885
A survey of available tools and web servers for analysis of protein-protein interactions and interfacesQ37164596
The structural determinants that lead to the formation of particular oligomeric structures in the pancreatic-type ribonuclease family.Q37239929
Protein-protein interaction and quaternary structureQ37277360
Amyloidogenesis in its biological environment: challenging a fundamental issue in protein misfolding diseasesQ37308599
Cystatin superfamilyQ37696036
Prediction of amyloid aggregation in vivoQ37890862
The amyloid state of proteins in human diseasesQ37994283
ICBS: a database of interactions between protein chains mediated by beta-sheet formationQ44419072
Structural organization of alpha-synuclein fibrils studied by site-directed spin labelingQ45112183
The parallel superpleated beta-structure as a model for amyloid fibrils of human amylinQ46422953
Protein contacts, inter-residue interactions and side-chain modelling.Q46845489
Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forcesQ47621645
A dissection of specific and non-specific protein-protein interfacesQ47737233
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P304page(s)e94745
P577publication date2014-04-14
P1433published inPLOS OneQ564954
P1476titleIntermolecular β-strand networks avoid hub residues and favor low interconnectedness: a potential protection mechanism against chain dissociation upon mutation
P478volume9

Reverse relations

cites work (P2860)
Q58074760Defining the Dynamic Conformational Networks of Cross-β Peptide Assembly
Q30382732Protein structural robustness to mutations: an in silico investigation.
Q38785911Protein-Protein Interface and Disease: Perspective from Biomolecular Networks

Search more.