m6Acomet: large-scale functional prediction of individual mA RNA methylation sites from an RNA co-methylation network

m6Acomet: large-scale functional prediction of individual mA RNA methylation sites from an RNA co-methylation network is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/WuWCZSLZM19
P356DOI10.1186/S12859-019-2840-3
P932PMC publication ID6498663
P698PubMed publication ID31046660

P2093author name stringLin Zhang
Hui Liu
Qing Zhang
Jia Meng
Zhen Wei
Jionglong Su
Xiangyu Wu
Kunqi Chen
P2860cites workFTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase.Q51236778
Enhancing Epitranscriptome Module Detection from m6A-Seq Data Using Threshold-Based Measurement Weighting Strategy.Q55663593
Charting the unknown epitranscriptomeQ56890100
WHISTLE: a high-accuracy map of the human N6-methyladenosine (m6A) epitranscriptome predicted using a machine learning approachQ64230165
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference.Q64971412
trumpet: transcriptome-guided quality assessment of m6A-seq data.Q64976676
Gene regulation: RNA methylation regulates the circadian clockQ86852496
The birth of the Epitranscriptome: deciphering the function of RNA modificationsQ21184012
WGCNA: an R package for weighted correlation network analysisQ21284194
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusionsQ21999527
Gene ontology: tool for the unification of biologyQ23781406
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sitesQ24300072
N6-methyladenosine-dependent regulation of messenger RNA stabilityQ24310545
A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylationQ24311871
Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferaseQ24315962
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seqQ24320240
A human protein-protein interaction network: a resource for annotating the proteomeQ24324450
m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cellsQ27303707
The Gene Ontology (GO) database and informatics resourceQ27860988
Network biology: understanding the cell's functional organizationQ27861027
Dynamic m(6)A mRNA methylation directs translational control of heat shock responseQ28118495
A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulationQ28267771
RNA-methylation-dependent RNA processing controls the speed of the circadian clockQ28591141
Biological network exploration with Cytoscape 3Q28655509
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2Q29547403
m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover.Q33865334
Removing technical variability in RNA-seq data using conditional quantile normalizationQ34143874
Grand Challenge Commentary: RNA epigenetics?Q34149996
Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression networkQ34947143
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptomeQ35804751
Gene expression regulation mediated through reversible m⁶A RNA methylationQ38198852
Emerging roles of RNA modification: m(6)A and U-tailQ38244608
Role of the N6-methyladenosine RNA mark in gene regulation and its implications on development and diseaseQ38259125
Detecting RNA modifications in the epitranscriptome: predict and validateQ39143334
The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells.Q45067620
MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome.Q46008109
Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control.Q47352505
RNA methylation and diseases: experimental results, databases, Web servers and computational modelsQ47429144
Role of N6-methyladenosine modification in cancerQ47567064
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesCytoscapeQ3699942
WGCNAQ102537983
DESeq2Q113018293
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)223
P577publication date2019-05-02
P1433published inBMC BioinformaticsQ4835939
P1476titlem6Acomet: large-scale functional prediction of individual mA RNA methylation sites from an RNA co-methylation network
P478volume20

Reverse relations

cites work (P2860)
Q97521123Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics
Q89530752Emerging role of tumor-related functional peptides encoded by lncRNA and circRNA
Q90115119Predict Epitranscriptome Targets and Regulatory Functions of N 6-Methyladenosine (m6A) Writers and Erasers
Q90347783RF-PseU: A Random Forest Predictor for RNA Pseudouridine Sites

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