Evolutionary conservation of motif constituents in the yeast protein interaction network

scientific article published on 14 September 2003

Evolutionary conservation of motif constituents in the yeast protein interaction network is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/NG1242
P698PubMed publication ID12973352

P50authorAlbert-László BarabásiQ725467
P2093author name stringOltvai ZN
Wuchty S
P2860cites workProtein dispensability and rate of evolutionQ46183570
Systems biology. Life's complexity pyramidQ52029736
Do essential genes evolve slowly?Q52208575
Genomic function (communication arising): Rate of evolution and gene dispensabilityQ56994165
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactionsQ24548456
Transcriptional regulatory networks in Saccharomyces cerevisiaeQ27860846
Collective dynamics of 'small-world' networksQ27861064
Network motifs: simple building blocks of complex networksQ29547340
Network motifs in the transcriptional regulation network of Escherichia coliQ29547342
Comparative assessment of large-scale data sets of protein-protein interactionsQ29547451
From molecular to modular cell biologyQ29547493
Systems biology: a brief overviewQ29547514
MIPS: a database for genomes and protein sequencesQ29614501
Automatic clustering of orthologs and in-paralogs from pairwise species comparisonsQ29615401
Evolutionary rate in the protein interaction networkQ29617048
Hierarchical organization of modularity in metabolic networksQ29618451
Essential genes are more evolutionarily conserved than are nonessential genes in bacteriaQ31066425
The identification of functional modules from the genomic association of genesQ34027115
Modular organization of cellular networksQ34329388
Engineered gene circuits.Q34997456
Control, exploitation and tolerance of intracellular noiseQ34997459
P433issue2
P304page(s)176-179
P577publication date2003-09-14
P1433published inNature GeneticsQ976454
P1476titleEvolutionary conservation of motif constituents in the yeast protein interaction network
P478volume35

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cites work (P2860)
Q85203380A Novel Network Model for Molecular Prognosis
Q34698488A comprehensive Plasmodium falciparum protein interaction map reveals a distinct architecture of a core interactome
Q24324450A human protein-protein interaction network: a resource for annotating the proteome
Q36327214A map of human cancer signaling
Q34324678A methodology for detecting the orthology signal in a PPI network at a functional complex level.
Q28388627A novel network model identified a 13-gene lung cancer prognostic signature
Q24799473Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
Q34921401Algorithmic and analytical methods in network biology
Q21202790An approach to evaluate the topological significance of motifs and other patterns in regulatory networks
Q54264806Applying mouse complex-trait resources to behavioural genetics.
Q39765578Applying network analysis to the conservation of habitat trees in urban environments: a case study from Brisbane, Australia
Q35458676Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis
Q36591979Assortativity and leadership emerge from anti-preferential attachment in heterogeneous networks
Q24813701Binding properties and evolution of homodimers in protein-protein interaction networks
Q33964422Bio::Homology::InterologWalk--a Perl module to build putative protein-protein interaction networks through interolog mapping
Q30989837Biological networks and analysis of experimental data in drug discovery
Q35204371Biophysical fitness landscapes for transcription factor binding sites
Q52696604Characterization of OglDREB2A gene from African rice (Oryza glaberrima), comparative analysis and its transcriptional regulation under salinity stress
Q41910227Cliques and duplication-divergence network growth.
Q33256165Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions
Q30491292Co-expression among constituents of a motif in the protein-protein interaction network
Q33847850Colored motifs reveal computational building blocks in the C. elegans brain
Q33599456Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test
Q28548006Computational Identification of Post Translational Modification Regulated RNA Binding Protein Motifs
Q34958642Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder
Q37314768Crosstalk between Aurora-A and p53: frequent deletion or downregulation of Aurora-A in tumors from p53 null mice
Q51931172Detecting conserved interaction patterns in biological networks
Q35804130Detecting conserved protein complexes using a dividing-and-matching algorithm and unequally lenient criteria for network comparison
Q33241064Differential evolutionary conservation of motif modes in the yeast protein interaction network
Q24803744Discriminative topological features reveal biological network mechanisms
Q38268218Efficiency of the immunome protein interaction network increases during evolution
Q33906212Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs
Q28730461Evolution of biological interaction networks: from models to real data
Q52008641Evolution thinks modular
Q34266062Evolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human
Q33281132Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network
Q56896654Evolutionary design principles and functional characteristics based on kingdom-specific network motifs
Q33479336Evolutionary flexibility of protein complexes
Q52694724Evolutionary pattern of protein architecture in mammal and fruit fly genomes
Q37171591Functional characteristics of a double negative feedback loop mediated by microRNAs
Q34244125Functional organization and its implication in evolution of the human protein-protein interaction network
Q33528282Gene prioritization in Type 2 Diabetes using domain interactions and network analysis
Q90206582Genome-Wide Identification of Long Noncoding RNAs and Their Responses to Salt Stress in Two Closely Related Poplars
Q39207839Global mapping of gene/protein interactions in PubMed abstracts: a framework and an experiment with P53 interactions
Q34484767GraphAlignment: Bayesian pairwise alignment of biological networks.
Q36150999Graphlet Based Metrics for the Comparison of Gene Regulatory Networks
Q37693845Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network
Q24790990How biologically relevant are interaction-based modules in protein networks?
Q34110410Identification of important nodes in directed biological networks: a network motif approach
Q36156394Identification of large disjoint motifs in biological networks
Q33768919Identifying emerging motif in growing networks
Q37283339Identifying gene-disease associations using centrality on a literature mined gene-interaction network
Q35598512Impact of transcriptional properties on essentiality and evolutionary rate
Q59604148Improved prediction of missing protein interactome links via anomaly detection
Q35828145In search of the biological significance of modular structures in protein networks
Q33927521Inferring network mechanisms: the Drosophila melanogaster protein interaction network
Q26824897Integrative approaches for finding modular structure in biological networks
Q29615776Interaction network containing conserved and essential protein complexes in Escherichia coli
Q57659294Interaction network of proteins associated with abiotic stress response and development in wheat
Q29615773Interactome networks and human disease
Q37845324Linking the proteins—Elucidation of proteome‐scale networks using mass spectrometry
Q42318873LoTo: a graphlet based method for the comparison of local topology between gene regulatory networks.
Q30838604Modeling protein network evolution under genome duplication and domain shuffling
Q33553759Modular Organization of Residue-Level Contacts Shapes the Selection Pressure on Individual Amino Acid Sites of Ribosomal Proteins
Q33267898Modularity and dynamics of cellular networks
Q42201153Modularity of MAP kinases allows deformation of their signalling pathways
Q35885933Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution
Q42628246NemoProfile as an efficient approach to network motif analysis with instance collection
Q38258734Network Medicine: New Paradigm in the -Omics Era.
Q34995155Network analyses in systems pharmacology
Q27861027Network biology: understanding the cell's functional organization
Q53556135Network inference, analysis, and modeling in systems biology
Q34198065Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis
Q51656910Network motifs come in sets: Correlations in the randomization process
Q37645904Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction
Q34064935Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network
Q28397059Network-based identification of biomarkers coexpressed with multiple pathways
Q34408286Novel specificities emerge by stepwise duplication of functional modules.
Q34495436On the contributions of topological features to transcriptional regulatory network robustness
Q38066338On the functional and structural characterization of hubs in protein–protein interaction networks
Q33379070Organization of physical interactomes as uncovered by network schemas
Q30840360PRODIGEN: visualizing the probability landscape of stochastic gene regulatory networks in state and time space
Q51944579Pairwise alignment of protein interaction networks
Q33510438Phylogenetic analysis of modularity in protein interaction networks
Q34326245Predicting Candidate Genes Based on Combined Network Topological Features: A Case Study in Coronary Artery Disease
Q38474935Predicting disease-related proteins based on clique backbone in protein-protein interaction network
Q35193525Principles of microRNA regulation of a human cellular signaling network
Q33361269Protein complex evolution does not involve extensive network rewiring.
Q33745719Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks
Q33410395Protein evolution on a human signaling network
Q36436811Protein interaction networks in plants
Q36403382Protein linguistics - a grammar for modular protein assembly?
Q24295390Protein-tyrosine kinase and GTPase signals cooperate to phosphorylate and activate Wiskott-Aldrich syndrome protein (WASP)/neuronal WASP
Q33307526Proteomic shifts in embryonic stem cells with gene dose modifications suggest the presence of balancer proteins in protein regulatory networks
Q33284271Reconstruction of human protein interolog network using evolutionary conserved network
Q27004898Regulatory network features in Listeria monocytogenes-changing the way we talk
Q30830693Rich-club phenomenon in the interactome of P. falciparum--artifact or signature of a parasitic life style?
Q35600549Sensible method for updating motif instances in an increased biological network
Q44109826Stability of Control Networks in Autonomous Homeostatic Regulation of Stem Cell Lineages
Q25255720Stable evolutionary signal in a yeast protein interaction network
Q44145858Stochastic resonance in feedforward-loop neuronal network motifs in astrocyte field
Q58782644Synchronous birth is a dominant pattern in receptor-ligand evolution
Q38857177Synthetic Morphogenesis
Q40101159Taking the mystery out of biological networks.
Q30478837The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
Q33468705The Symbiosis Interactome: a computational approach reveals novel components, functional interactions and modules in Sinorhizobium meliloti
Q33262516The effects of incomplete protein interaction data on structural and evolutionary inferences
Q24537125The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model
Q30412371Tinnitus: network pathophysiology-network pharmacology
Q58714427Topological motifs populate complex networks through grouped attachment
Q33244269Topology and weights in a protein domain interaction network--a novel way to predict protein interactions
Q33475174Triangle network motifs predict complexes by complementing high-error interactomes with structural information
Q37070273Understanding biological functions through molecular networks
Q21092867Unequal evolutionary conservation of human protein interactions in interologous networks
Q21145374Unraveling protein networks with power graph analysis
Q33745012Variants in exons and in transcription factors affect gene expression in trans
Q64077066Variational principle for scale-free network motifs

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