Identification of critical connectors in the directed reaction-centric graphs of microbial metabolic networks

scientific article published on 13 June 2019

Identification of critical connectors in the directed reaction-centric graphs of microbial metabolic networks is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/KimAY19
P356DOI10.1186/S12859-019-2897-Z
P932PMC publication ID6567475
P698PubMed publication ID31195955

P50authorSung Ho YoonQ91624431
Daniel A. AshlockQ102163428
P2093author name stringEun-Youn Kim
P2860cites workExperimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655Q22065459
Modularity and community structure in networksQ24548534
A protocol for generating a high-quality genome-scale metabolic reconstructionQ24603373
BiGG Models: A platform for integrating, standardizing and sharing genome-scale modelsQ24698676
Network biology: understanding the cell's functional organizationQ27861027
Collective dynamics of 'small-world' networksQ27861064
Using Genome-scale Models to Predict Biological CapabilitiesQ28085366
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0Q28246991
What is flux balance analysis?Q28275348
Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality dataQ28306582
Functional modules, structural topology, and optimal activity in metabolic networksQ28484351
Controllability in cancer metabolic networks according to drug targets as driver nodesQ28535399
Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducensQ28538200
Network motifs: simple building blocks of complex networksQ29547340
The large-scale organization of metabolic networksQ29547498
Reconstruction of biochemical networks in microorganismsQ29616018
Hierarchical organization of modularity in metabolic networksQ29618451
Functional cartography of complex metabolic networksQ30481006
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organismsQ30763008
Connecting extracellular metabolomic measurements to intracellular flux states in yeastQ33422147
Classification of scale-free networksQ34188563
Broker genes in human diseaseQ34334459
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.Q34500266
Topology of molecular interaction networksQ34508185
An experimentally validated genome-scale metabolic reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228.Q34740659
COBRApy: COnstraints-Based Reconstruction and Analysis for PythonQ34911268
Using graph theory to analyze biological networksQ35005792
Thirteen years of building constraint-based in silico models of Escherichia coliQ35109629
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamicsQ35753717
Metabolite essentiality elucidates robustness of Escherichia coli metabolismQ35939983
Cascading failure and robustness in metabolic networksQ36869768
KEGG: new perspectives on genomes, pathways, diseases and drugsQ37556832
A conceptual review on systems biology in health and diseases: from biological networks to modern therapeuticsQ38193097
Cellular mechanisms and physiological consequences of redox-dependent signallingQ38214052
Signalling specificity in the Akt pathway in breast cancerQ38252278
Systems strategies for developing industrial microbial strainsQ38602367
A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.Q40519259
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED.Q44669931
Inferring meaningful pathways in weighted metabolic networksQ47604665
Bipartite graphs in systems biology and medicine: a survey of methods and applications.Q52323803
The Reactome Pathway Knowledgebase.Q52433690
Lethality and synthetic lethality in the genome-wide metabolic network of Escherichia coli.Q54483559
The small world inside large metabolic networks.Q55016270
Centers of complex networksQ56991625
Metabolic network reconstruction and phenome analysis of the industrial microbe, Escherichia coli BL21(DE3)Q58707152
P433issue1
P921main subjectmetabolic networkQ2263094
P304page(s)328
P577publication date2019-06-13
P1433published inBMC BioinformaticsQ4835939
P1476titleIdentification of critical connectors in the directed reaction-centric graphs of microbial metabolic networks
P478volume20

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