Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures

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Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/LuP07
P6179Dimensions Publication ID1021503537
P356DOI10.1186/1471-2105-8-157
P932PMC publication ID1890303
P698PubMed publication ID17509157
P5875ResearchGate publication ID6323626

P2093author name stringXin Lu
David L Perkins
P2860cites workSignificance analysis of microarrays applied to the ionizing radiation responseQ24606608
Statistical significance for genomewide studiesQ24681264
Determination of the differentially expressed genes in microarray experiments using local FDRQ24795812
A comparative review of estimates of the proportion unchanged genes and the false discovery rateQ24811299
Emergence of Scaling in Random NetworksQ27037290
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implicationsQ27860709
Network biology: understanding the cell's functional organizationQ27861027
Molecular portraits of human breast tumoursQ28032461
X chromosomal abnormalities in basal-like human breast cancerQ28296876
Hierarchical organization of modularity in metabolic networksQ29618451
Preprocessing of oligonucleotide array dataQ30936359
Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-valuesQ30955425
Recursive SVM feature selection and sample classification for mass-spectrometry and microarray dataQ31036404
Comparative analysis of algorithms for signal quantitation from oligonucleotide microarraysQ47232188
Comparison of methods for estimating the number of true null hypotheses in multiplicity testing.Q47416509
A mixture model for estimating the local false discovery rate in DNA microarray analysisQ48545552
Improving false discovery rate estimationQ48557492
A stochastic downhill search algorithm for estimating the local false discovery rateQ51930818
Parametric and nonparametric FDR estimation revisitedQ51933187
twilight; a Bioconductor package for estimating the local false discovery rateQ51976557
Correlation between gene expression levels and limitations of the empirical bayes methodology for finding differentially expressed genesQ83218555
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P921main subjecthypothesisQ41719
P304page(s)157
P577publication date2007-05-18
P1433published inBMC BioinformaticsQ4835939
P1476titleRe-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures
P478volume8

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cites work (P2860)
Q33686335A censored beta mixture model for the estimation of the proportion of non-differentially expressed genes
Q37832966Assessment of kidney organ quality and prediction of outcome at time of transplantation
Q42969946Estimating the Proportion of True Null Hypotheses Using the Pattern of Observed p-values.
Q31161824Gene expression microarray data analysis demystified
Q34966567Heading down the wrong pathway: on the influence of correlation within gene sets
Q30531263Literature aided determination of data quality and statistical significance threshold for gene expression studies
Q33523173Modelling p-value distributions to improve theme-driven survival analysis of cancer transcriptome datasets
Q42021385Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations
Q45756732RDCurve: A Nonparametric Method to Evaluate the Stability of Ranking Procedures
Q31135637Revisiting adverse effects of cross-hybridization in Affymetrix gene expression data: do they matter for correlation analysis?
Q34548744Sources of variation in false discovery rate estimation include sample size, correlation, and inherent differences between groups
Q34306294The limitations of simple gene set enrichment analysis assuming gene independence
Q33883447Towards Accurate Estimation of the Proportion of True Null Hypotheses in Multiple Testing

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