Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential

scientific article published on 6 February 2013

Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKT054
P932PMC publication ID3627569
P698PubMed publication ID23389952
P5875ResearchGate publication ID235416347

P50authorFrank Emmert-StreibQ55079196
P2093author name stringShailesh Tripathi
Galina V Glazko
P2860cites workGene ontology: tool for the unification of biologyQ23781406
Reliability and reproducibility issues in DNA microarray measurementsQ24289394
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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene listsQ28131785
The theory of open systems in physics and biologyQ54188109
Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory responseQ57374967
Gene expression correlates of clinical prostate cancer behaviorQ60156349
Gene expression profiles of B-lineage adult acute lymphocytic leukemia reveal genetic patterns that identify lineage derivation and distinct mechanisms of transformationQ81390810
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetesQ29547229
Analyzing gene expression data in terms of gene sets: methodological issuesQ31101081
A general modular framework for gene set enrichment analysisQ33405451
Comparative study of gene set enrichment methods.Q33499521
RNA-seq: from technology to biologyQ33604404
Pathway analysis of expression data: deciphering functional building blocks of complex diseasesQ33921210
Networks for systems biology: conceptual connection of data and functionQ33922215
An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survivalQ33939753
Independent filtering increases detection power for high-throughput experimentsQ34006510
De-correlating expression in gene-set analysisQ34110433
Gene-set approach for expression pattern analysisQ37059481
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A unifying view of 21st century systems biologyQ37632840
The chronic fatigue syndrome: a comparative pathway analysis.Q38515603
Rotation testing in gene set enrichment analysis for small direct comparison experimentsQ39818464
A multivariate extension of the gene set enrichment analysis.Q40164624
Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene setsQ42541255
Gene set enrichment analysis made simpleQ42795507
Comparison of global tests for functional gene sets in two-group designs and selection of potentially effect-causing genesQ48145972
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectstatisticsQ12483
P304page(s)e82
P577publication date2013-02-06
P1433published inNucleic Acids ResearchQ135122
P1476titleEnsuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential
P478volume41

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Q36259023GSAR: Bioconductor package for Gene Set analysis in R
Q39937097Gene Expression Profiling of Evening Fatigue in Women Undergoing Chemotherapy for Breast Cancer
Q97644565Gene Set Analysis: Challenges, Opportunities, and Future Research
Q39051548Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets.
Q30991698Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline
Q39024434Importance of collection in gene set enrichment analysis of drug response in cancer cell lines.
Q55399256Pathway analysis identifies altered mitochondrial metabolism, neurotransmission, structural pathways and complement cascade in retina/RPE/ choroid in chick model of form-deprivation myopia.
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Q40412565Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast.
Q35154813Transcriptional changes in canine distemper virus-induced demyelinating leukoencephalitis favor a biphasic mode of demyelination

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