| scholarly article | Q13442814 |
| P356 | DOI | 10.1111/J.1574-6976.2010.00227.X |
| P8608 | Fatcat ID | release_2cihhg7j4rccnb6fne6af2faby |
| P698 | PubMed publication ID | 20491932 |
| P5875 | ResearchGate publication ID | 44620185 |
| P2093 | author name string | Akira Ishihama | |
| P2860 | cites work | Effects of Fis on Escherichia coli gene expression during different growth stages. | Q54435116 |
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| Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12. | Q54537142 | ||
| The sigma70 family of sigma factors | Q21999783 | ||
| Escherichia coli K-12: a cooperatively developed annotation snapshot--2005 | Q22065980 | ||
| Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm | Q24538827 | ||
| A previously undescribed pathway for pyrimidine catabolism | Q24546368 | ||
| Dps protects cells against multiple stresses during stationary phase | Q24564681 | ||
| Global phenotypic characterization of bacteria | Q24654173 | ||
| Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 | Q24672423 | ||
| RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions | Q25257226 | ||
| The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer | Q27735587 | ||
| Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase | Q27860794 | ||
| Transcriptional regulatory networks in Saccharomyces cerevisiae | Q27860846 | ||
| Network biology: understanding the cell's functional organization | Q27861027 | ||
| In vitro selection of RNA molecules that bind specific ligands | Q27861109 | ||
| Transcriptional regulatory code of a eukaryotic genome | Q27933887 | ||
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| Transcriptional regulation by cAMP and its receptor protein | Q40856827 | ||
| Transcription activation at Class I CAP-dependent promoters | Q40856914 | ||
| Genome-wide transcriptional response of chemostat-cultured Escherichia coli to zinc | Q40946059 | ||
| Analysis of chromatin structure by in vivo formaldehyde cross-linking. | Q41132202 | ||
| Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites | Q41373606 | ||
| Cra and the control of carbon flux via metabolic pathways | Q41401330 | ||
| Adaptation of gene expression in stationary phase bacteria | Q41655685 | ||
| Global gene expression profiling in Escherichia coli K12. The effects of integration host factor | Q41743959 | ||
| folA, a new member of the TyrR regulon in Escherichia coli K-12. | Q41858698 | ||
| Genomic SELEX search for target promoters under the control of the PhoQP-RstBA signal relay cascade | Q42020709 | ||
| Participation of regulator AscG of the beta-glucoside utilization operon in regulation of the propionate catabolism operon | Q42166562 | ||
| PdhR (pyruvate dehydrogenase complex regulator) controls the respiratory electron transport system in Escherichia coli | Q42214791 | ||
| The uncharacterized transcription factor YdhM is the regulator of the nemA gene, encoding N-ethylmaleimide reductase | Q42406816 | ||
| Identification of additional genes belonging to the LexA regulon in Escherichia coli | Q42486422 | ||
| Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR. | Q42599502 | ||
| Global expression profiling of acetate-grown Escherichia coli | Q43869546 | ||
| Two different modes of transcription repression of the Escherichia coli acetate operon by IclR. | Q44256602 | ||
| Transcriptional regulation of drug efflux genes by EvgAS, a two-component system in Escherichia coli | Q44605329 | ||
| Expression profiling using a hexamer-based universal microarray | Q44801528 | ||
| The transcription regulator AllR senses both allantoin and glyoxylate and controls a set of genes for degradation and reutilization of purines | Q44873746 | ||
| The Escherichia coli Fis promoter is regulated by changes in the levels of its transcription initiation nucleotide CTP. | Q45072784 | ||
| Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli | Q45136836 | ||
| A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis. | Q45944200 | ||
| Genome-wide responses to carbonyl electrophiles in Bacillus subtilis: control of the thiol-dependent formaldehyde dehydrogenase AdhA and cysteine proteinase YraA by the MerR-family regulator YraB (AdhR). | Q46146260 | ||
| Anaerobic regulation of citrate fermentation by CitAB in Escherichia coli | Q46255633 | ||
| Global gene expression analysis revealed an unsuspected deo operon under the control of molybdate sensor, ModE protein, in Escherichia coli | Q46736713 | ||
| Gene expression in Escherichia coli biofilms | Q47261810 | ||
| Conservation of gene co-regulation in prokaryotes and eukaryotes | Q47615461 | ||
| The repressor of the PEP:fructose phosphotransferase system is required for the transcription of the pps gene of Escherichia coli | Q50194348 | ||
| The role of dimerization in noise reduction of simple genetic networks | Q52026866 | ||
| Escherichia coli cAMP Receptor Protein−DNA Complexes. 2. Structural Asymmetry of DNA Bending | Q38337691 | ||
| Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling. | Q38346192 | ||
| Definition of a consensus DNA-binding site for the Escherichia coli pleiotropic regulatory protein, FruR. | Q38355728 | ||
| DNA microarray analysis of fim mutations in Escherichia coli | Q38363145 | ||
| Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein | Q38364098 | ||
| LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli. | Q38364145 | ||
| CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. | Q38517020 | ||
| Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes | Q38668650 | ||
| Global impact of sdiA amplification revealed by comprehensive gene expression profiling of Escherichia coli | Q39503203 | ||
| Structure and function of bacterial sigma factors | Q39532182 | ||
| The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. | Q39543820 | ||
| Evolution of transcription factors and the gene regulatory network in Escherichia coli | Q39735217 | ||
| Bacterial regulation: global regulatory networks | Q40080349 | ||
| Classification and strength measurement of stationary-phase promoters by use of a newly developed promoter cloning vector | Q40211943 | ||
| RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12 | Q40403678 | ||
| Transcription activation by catabolite activator protein (CAP) | Q28146199 | ||
| DNA supercoiling and transcription in Escherichia coli: The FIS connection | Q28207592 | ||
| A comparative genomics approach to prediction of new members of regulons | Q28361682 | ||
| The yjeB (nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional regulator | Q28768625 | ||
| Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
| Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data | Q30698614 | ||
| Systematic search for the Cra-binding promoters using genomic SELEX system. | Q30796970 | ||
| A novel nucleoid protein of Escherichia coli induced under anaerobiotic growth conditions | Q30977830 | ||
| Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites | Q31134615 | ||
| Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes | Q31346591 | ||
| Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli | Q33511247 | ||
| Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival | Q33631224 | ||
| The functional and regulatory roles of sigma factors in transcription | Q33671342 | ||
| Multiprotein-DNA complexes in transcriptional regulation | Q33689910 | ||
| Making connections between novel transcription factors and their DNA motifs. | Q33780899 | ||
| Mechanism of activation of catabolite-sensitive genes: a positive control system | Q33815767 | ||
| Functional modulation of Escherichia coli RNA polymerase | Q33920172 | ||
| Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays | Q33937839 | ||
| A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli | Q33969406 | ||
| Two extracytoplasmic function sigma subunits, sigma(E) and sigma(FecI), of Escherichia coli: promoter selectivity and intracellular levels | Q33993851 | ||
| DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide | Q33996654 | ||
| Adaptation of Escherichia coli to redox environments by gene expression | Q34061614 | ||
| Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics | Q34063477 | ||
| Regulatory network of acid resistance genes in Escherichia coli | Q34190517 | ||
| Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome. | Q34201883 | ||
| Allosteric regulation of the cAMP receptor protein | Q34245332 | ||
| Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space | Q34267512 | ||
| Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW) | Q34321388 | ||
| Structure and evolution of transcriptional regulatory networks | Q34326530 | ||
| The catabolite repressor/activator (Cra) protein of enteric bacteria | Q34383141 | ||
| Escherichia coli RNA polymerase subunit omega and its N-terminal domain bind full-length beta' to facilitate incorporation into the alpha2beta subassembly | Q34517353 | ||
| RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. | Q34586477 | ||
| Escherichia coli gene expression responsive to levels of the response regulator EvgA. | Q34838928 | ||
| DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coli | Q34976754 | ||
| The role of Fe-S proteins in sensing and regulation in bacteria | Q35121932 | ||
| Stepwise binding and bending of DNA by Escherichia coli integration host factor | Q35157427 | ||
| DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli | Q35397611 | ||
| Mechanism of action of the lexA gene product | Q35398282 | ||
| Identifying global regulators in transcriptional regulatory networks in bacteria | Q35565608 | ||
| Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions | Q35613001 | ||
| Role of the RNA polymerase alpha subunit in transcription activation | Q35658504 | ||
| Maximizing the potential of functional genomics | Q35670183 | ||
| Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes | Q35737932 | ||
| Charting gene regulatory networks: strategies, challenges and perspectives. | Q35744439 | ||
| Factors influencing the identification of transcription factor binding sites by cross-species comparison. | Q35805952 | ||
| Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF) | Q35874599 | ||
| Structure-based analysis of HU-DNA binding | Q35933834 | ||
| Protein-protein communication within the transcription apparatus | Q36099108 | ||
| Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli | Q36137894 | ||
| DNA microarray technologies for measuring protein-DNA interactions | Q36535309 | ||
| Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts | Q36700176 | ||
| The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase. | Q36736448 | ||
| Libraries for genomic SELEX. | Q36844599 | ||
| A peptide from the Drosophila Shaker K+ channel inhibits a voltage-gated K+ channel in basolateral membranes of Necturus enterocytes | Q36859085 | ||
| Escherichia coli NsrR regulates a pathway for the oxidation of 3-nitrotyramine to 4-hydroxy-3-nitrophenylacetate | Q36898406 | ||
| Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli | Q37039601 | ||
| Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux | Q37247811 | ||
| Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli | Q37573783 | ||
| Molecular assembly and functional modulation of Escherichia coli RNA polymerase | Q37786548 | ||
| The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. | Q38290447 | ||
| RutR is the uracil/thymine-sensing master regulator of a set of genes for synthesis and degradation of pyrimidines. | Q38297562 | ||
| Enhancement of the synthesis of RpoN, Cra, and H-NS by polyamines at the level of translation in Escherichia coli cultured with glucose and glutamate. | Q38305854 | ||
| Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. | Q38309827 | ||
| Microarray analysis of gene regulation by oxygen, nitrate, nitrite, FNR, NarL and NarP during anaerobic growth of Escherichia coli: new insights into microbial physiology | Q38316725 | ||
| A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth | Q38317337 | ||
| Identification of the CRP regulon using in vitro and in vivo transcriptional profiling | Q38334770 | ||
| AraC-DNA looping: Orientation and distance-dependent loop breaking by the cyclic AMP receptor protein | Q38336216 | ||
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 628-645 | |
| P577 | publication date | 2010-04-14 | |
| P13046 | publication type of scholarly work | review article | Q7318358 |
| P1433 | published in | FEMS Microbiology Reviews | Q15762226 |
| P1476 | title | Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networks | |
| P478 | volume | 34 |
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