sigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition.

scientific article published on 21 October 2013

sigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1111/1758-2229.12112
P698PubMed publication ID24596257
P5875ResearchGate publication ID260528583

P50authorPaolo LandiniQ57631601
P2093author name stringJohannes Wolf
Thomas Egli
Stephan Lacour
P2860cites workIdentification of novel small RNAs using comparative genomics and microarraysQ24601229
Regulation of sigma factor competition by the alarmone ppGppQ24675316
Riboregulation by DsrA RNA: trans-actions for global economyQ28140236
Regulation and mode of action of the second small RNA activator of RpoS translation, RprAQ28212671
The apparent clock-like evolution of Escherichia coli in glucose-limited chemostats is reproducible at large but not at small population sizes and can be explained with Monod kineticsQ28221201
A highly conserved 6S RNA structure is required for regulation of transcriptionQ28241931
RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.Q30579774
Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistenceQ33262403
Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coliQ33511247
Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymeraseQ33786712
Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promotersQ33886990
The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) proteinQ33889724
Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coliQ33995553
RpoS-dependent transcriptional control of sprE: regulatory feedback loopQ34011945
The RpoS-mediated general stress response in Escherichia coliQ34189650
Microbial Competition: Escherichia coli Mutants That Take Over Stationary Phase CulturesQ34305902
A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymeraseQ34345517
Are respiratory enzymes the primary sources of intracellular hydrogen peroxide?Q34347519
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coliQ34383062
ppGpp: a global regulator in Escherichia coli.Q34415352
Identity and function of a large gene network underlying mutagenic repair of DNA breaksQ42969505
What makes an Escherichia coli promoter sigma(S) dependent? Role of the -13/-14 nucleotide promoter positions and region 2.5 of sigma(S).Q43544098
Substitutions in region 2.4 of sigma70 allow recognition of the sigmaS-dependent aidB promoter.Q45126633
Changes in conserved region 2 of Escherichia coli sigma 70 affecting promoter recognitionQ46230372
Control of RpoS in global gene expression of Escherichia coli in minimal media.Q46324887
Reduced hydroperoxidase (HPI and HPII) activity in the Deltafur mutant contributes to increased sensitivity to UVA radiation in Escherichia coli.Q46476066
RpoS regulation of gene expression during exponential growth of Escherichia coli K12.Q46833743
Role of the spacer between the -35 and -10 regions in sigmas promoter selectivity in Escherichia coliQ46899395
Specific growth rate and not cell density controls the general stress response in Escherichia coliQ47376881
The entericidin locus of Escherichia coli and its implications for programmed bacterial cell death.Q47793167
Expression dynamics of RpoS/Crl-dependent genes in Escherichia coliQ47983286
Multiple pathways for regulation of sigmaS (RpoS) stability in Escherichia coli via the action of multiple anti-adaptorsQ50063012
Cross-talk mechanisms in biofilm formation and responses to environmental and physiological stress in Escherichia coli.Q51735372
Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli.Q51744020
Differential ability of sigma(s) and sigma70 of Escherichia coli to utilize promoters containing half or full UP-element sites.Q52941069
The response regulator RssB, a recognition factor for sigmaS proteolysis in Escherichia coli, can act like an anti-sigmaS factor.Q52974214
The Escherichia coli histone-like protein HU regulates rpoS translation.Q54016367
The csgD mRNA as a hub for signal integration via multiple small RNAs.Q54340513
Antitoxin DinJ influences the general stress response through transcript stabilizer CspE.Q54350084
The -35 sequence location and the Fis-sigma factor interface determine sigmas selectivity of the proP (P2) promoter in Escherichia coli.Q54446706
The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription.Q54466501
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12.Q54495569
The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stabilityQ54631609
Thin aggregative fimbriae and cellulose enhance long-term survival and persistence of SalmonellaQ34564944
RpoS plays a central role in the SOS induction by sub-lethal aminoglycoside concentrations in Vibrio choleraeQ34683559
The PhoP/PhoQ two-component system stabilizes the alternative sigma factor RpoS in Salmonella entericaQ35011827
In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elementsQ35120775
Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different?Q35161491
Bacterial persistence increases as environmental fitness decreases.Q35881863
Stationary-phase physiologyQ35919834
ppGpp regulation of RpoS degradation via anti-adaptor protein IraP.Q35921731
Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli.Q36248144
General pathway for turning on promoters transcribed by RNA polymerases containing alternative sigma factorsQ36513675
The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase.Q36736448
Vibrio vulnificus rpoS expression is repressed by direct binding of cAMP-cAMP receptor protein complex to its two promoter regions.Q37142677
The stationary-phase sigma factor sigma(S) is responsible for the resistance of Escherichia coli stationary-phase cells to mazEF-mediated cell deathQ37191484
Regulation of RpoS proteolysis in Escherichia coli: the response regulator RssB is a recognition factor that interacts with the turnover element in RpoSQ37211276
SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.Q37583338
Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coliQ37600115
Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networksQ37759083
A multifactor regulatory circuit involving H-NS, VirF and an antisense RNA modulates transcription of the virulence gene icsA of Shigella flexneri.Q38333799
LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli.Q38364145
Redefining Escherichia coli σ(70) promoter elements: -15 motif as a complement of the -10 motifQ38958313
DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic studyQ39545937
Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase systemQ39679110
Role of ppGpp in rpoS stationary-phase regulation in Escherichia coliQ39680255
A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coliQ39705576
Identification and analysis of 'extended -10' promoters in Escherichia coli.Q39808956
The role of the sigma factor sigma S (KatF) in bacterial global regulationQ40572983
Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleasesQ40605925
Interactions between the 2.4 and 4.2 regions of sigmaS, the stress-specific sigma factor of Escherichia coli, and the -10 and -35 promoter elementsQ40695089
Transcriptional regulation by cAMP and its receptor proteinQ40856827
Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coliQ41181646
Binding of the unorthodox transcription activator, Crl, to the components of the transcription machineryQ41679784
The global repressor FliZ antagonizes gene expression by σS-containing RNA polymerase due to overlapping DNA binding specificityQ41776471
LrhA regulates rpoS translation in response to the Rcs phosphorelay system in Escherichia coliQ41835799
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivityQ41863185
Escherichia coli σ⁷⁰ senses sequence and conformation of the promoter spacer regionQ41965987
Biofilm formation-gene expression relay system in Escherichia coli: modulation of sigmaS-dependent gene expression by the CsgD regulatory protein via sigmaS protein stabilizationQ42010076
The nlpD gene is located in an operon with rpoS on the Escherichia coli chromosome and encodes a novel lipoprotein with a potential function in cell wall formationQ42494262
Nucleotides from -16 to -12 determine specific promoter recognition by bacterial sigmaS-RNA polymerase.Q42603337
Sigma38 (rpoS) RNA polymerase promoter engagement via -10 region nucleotidesQ42650826
RNA polymerase holoenzymes can share a single transcription start site for the Pm promoter. Critical nucleotides in the -7 to -18 region are needed to select between RNA polymerase with sigma38 or sigma32.Q42670941
Mechanism of specific recognition of the aidB promoter by sigma(S)-RNA polymeraseQ42674017
Growth phase and (p)ppGpp control of IraD, a regulator of RpoS stability, in Escherichia coliQ42688985
Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populationsQ42711234
Antitoxin MqsA helps mediate the bacterial general stress responseQ42735911
Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of sigmas activity and levelsQ42911897
P433issue1
P921main subjectEscherichia coliQ25419
environmental stressQ107365219
P304page(s)1-13
P577publication date2013-10-21
P1433published inEnvironmental Microbiology ReportsQ15816931
P1476titlesigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition
P478volume6

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