The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

scientific article

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/EMBOJ/17.20.6061
P932PMC publication ID1170932
P698PubMed publication ID9774349
P5875ResearchGate publication ID13512549

P50authorGisela StorzQ29470553
P2093author name stringZhang A
Tiwari A
Hengge-Aronis R
Altuvia S
Argaman L
P2860cites workThe Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome bindingQ24533360
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq geneQ24643457
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.Q34327163
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coliQ34383062
Modulation of acid-induced amino acid decarboxylase gene expression by hns in Escherichia coliQ35908939
Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q betaQ36104877
The response regulator SprE controls the stability of RpoS.Q37695886
Site-specific interaction of Qbeta host factor and ribosomal protein S1 with Qbeta and R17 bacteriophage RNAsQ38359700
Role for the histone-like protein H-NS in growth phase-dependent and osmotic regulation of sigma S and many sigma S-dependent genes in Escherichia coliQ39474355
Regulation of Escherichia coli starvation sigma factor (sigma s) by ClpXP proteaseQ39839940
The RNA-binding protein HF-I plays a global regulatory role which is largely, but not exclusively, due to its role in expression of the sigmaS subunit of RNA polymerase in Escherichia coliQ39843978
Mutations that increase expression of the rpoS gene and decrease its dependence on hfq function in Salmonella typhimuriumQ39844182
Genetic mapping of katF, a locus that with katE affects the synthesis of a second catalase species in Escherichia coliQ39966075
The role of the sigma factor sigma S (KatF) in bacterial global regulationQ40572983
Quantitative control of the stationary phase-specific sigma factor, sigma S, in Escherichia coli: involvement of the nucleoid protein H-NS.Q40805693
The response regulator RssB controls stability of the sigma(S) subunit of RNA polymerase in Escherichia coli.Q41064227
Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coliQ41181646
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Construction and properties of a family of pACYC184-derived cloning vectors compatible with pBR322 and its derivativesQ48221989
The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stabilityQ54631609
The host factor required for RNA phage Qbeta RNA replication in vitro. Intracellular location, quantitation, and purification by polyadenylate-cellulose chromatographyQ67508261
P433issue20
P407language of work or nameEnglishQ1860
P304page(s)6061-6068
P577publication date1998-10-01
P1433published inThe EMBO JournalQ1278554
P1476titleThe OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein
P478volume17

Reverse relations

cites work (P2860)
Q47588340A BLAST from the past: ancient origin of human Sm proteins
Q33653390A broadening world of bacterial small RNAs
Q34296188A complex network of small non-coding RNAs regulate motility in Escherichia coli
Q24536169A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
Q24652762A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures
Q42706878Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions
Q28553096Adaptive Remodeling of the Bacterial Proteome by Specific Ribosomal Modification Regulates Pseudomonas Infection and Niche Colonisation
Q37801470Adaptive response to oxidative stress: Bacteria, fungi, plants and animals
Q36172268Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition
Q34538442An antibody-based microarray assay for small RNA detection
Q41963002An improved method for surface immobilisation of RNA: application to small non-coding RNA-mRNA pairing.
Q44659004Antagonistic dark/light-induced SigB/SigD, group 2 sigma factors, expression through redox potential and their roles in cyanobacteria
Q42735911Antitoxin MqsA helps mediate the bacterial general stress response
Q34532849Archaea: an archetype for replication initiation studies?
Q34865022Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria.
Q91899957Bacterial Cyclopropane Fatty Acid Synthase mRNA Is Targeted by Activating and Repressing Small RNAs
Q26766027Bacterial Small Regulatory RNAs and Hfq Protein
Q34409384Bacterial small RNA regulators
Q28253347Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq
Q38103147Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli
Q24791802Beyond the proteome: non-coding regulatory RNAs
Q40211943Classification and strength measurement of stationary-phase promoters by use of a newly developed promoter cloning vector
Q38760531Cleavage of poly(A) tails on the 3'-end of RNA by ribonuclease E of Escherichia coli
Q34240883Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function
Q39784092Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
Q38469100Competition among Hfq-binding small RNAs in Escherichia coli
Q33996659Computation-directed identification of OxyR DNA binding sites in Escherichia coli
Q39997770Constitutive Activation of the Escherichia coli Pho Regulon Upregulates rpoS Translation in an Hfq-Dependent Fashion
Q22122301Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Q90380584Contribution of GO System Glycosylases to Mutation Prevention in Caulobacter crescentus
Q40130460Controlled Expression of an rpoS Antisense RNA Can Inhibit RpoS Function in Escherichia coli
Q24684800Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
Q90057977Crystal structure of an Escherichia coli Hfq Core (residues 2-69)-DNA complex reveals multifunctional nucleic acid binding sites
Q33996654DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide
Q21145046Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
Q34508819Disruption of small RNA signaling caused by competition for Hfq.
Q42721560Dissecting RNA chaperone activity
Q34316573DksA affects ppGpp induction of RpoS at a translational level
Q48281391Emergence of New sRNAs in Enteric Bacteria is Associated with Low Expression and Rapid Evolution
Q54978504Engineering bacterial motility towards hydrogen-peroxide.
Q24670375Environmental signal integration by a modular AND gate
Q28292183Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs
Q34005271Essential requirements for robust signaling in Hfq dependent small RNA networks
Q35217099Functional characterization of bacterial sRNAs using a network biology approach
Q33996373Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
Q29615791Hfq and its constellation of RNA
Q28293533Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS
Q40987473Hfq binds directly to the ribosome-binding site of IS10 transposase mRNA to inhibit translation
Q24548921Hfq is necessary for regulation by the untranslated RNA DsrA
Q54293188Hfq reduces envelope stress by controlling expression of envelope-localized proteins and protein complexes in enteropathogenic Escherichia coli.
Q33370700Hfq regulates the expression of the thermostable direct hemolysin gene in Vibrio parahaemolyticus
Q29619904Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction
Q24672423Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Q37105983Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I.
Q34473835How to find small non-coding RNAs in bacteria
Q36337696Identification of bacterial sRNA regulatory targets using ribosome profiling.
Q24601229Identification of novel small RNAs using comparative genomics and microarrays
Q24540168Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure
Q36747192Impact of the RNA chaperone Hfq on the fitness and virulence potential of uropathogenic Escherichia coli.
Q24557422Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli
Q43808341Improving E. coli growth performance by manipulating small RNA expression.
Q34165784In vivo analysis of the overlapping functions of DnaK and trigger factor
Q28289704Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA
Q28211455Interactions of the non-coding RNA DsrA and RpoS mRNA with the 30 S ribosomal subunit
Q38602982Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.
Q33632476Interplay of global regulators and cell physiology in the general stress response of Escherichia coli
Q35852136Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes
Q24679480Limited role for the DsrA and RprA regulatory RNAs in rpoS regulation in Salmonella enterica
Q27680705Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching
Q38654086Mapping Transcription Regulatory Networks with ChIP-seq and RNA-seq.
Q90271711Mechanism for coordinate regulation of rpoS by sRNA-sRNA interaction in Escherichia coli
Q51471220Medicinal plant extracts can variously modify biofilm formation in Escherichia coli.
Q42751615Modelling translation initiation under the influence of sRNA
Q34811166Modification of the RpoS network with a synthetic small RNA.
Q35931768Multiple factors dictate target selection by Hfq-binding small RNAs
Q35589172Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi.
Q34322538Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets
Q58694980Negative Control of RpoS Synthesis by the sRNA ReaL in
Q90262566Non-lethal exposure to H2O2 boosts bacterial survival and evolvability against oxidative stress
Q28263595Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq
Q33801550Noncoding RNA genes
Q47296673OxyS small RNA induces cell cycle arrest to allow DNA damage repair
Q38935351Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding
Q36281008Peroxide-sensing transcriptional regulators in bacteria
Q43576806Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.
Q46077892Phenotypic consequences of RNA polymerase dysregulation in Escherichia coli.
Q37392501Poly(A)-assisted RNA decay and modulators of RNA stability
Q34006620Positive regulation by small RNAs and the role of Hfq
Q33879783Post-transcriptional control by global regulators of gene expression in bacteria.
Q21144899Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB
Q35554051Prominent roles of the NorR and Fur regulators in the Escherichia coli transcriptional response to reactive nitrogen species
Q42727261Pseudomonas aeruginosa SoxR does not conform to the archetypal paradigm for SoxR-dependent regulation of the bacterial oxidative stress adaptive response
Q39367031Quick change: post-transcriptional regulation in Pseudomonas
Q33742173RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins
Q40666181RNA chaperone activity of the Sm-like Hfq protein
Q35012331RNA loop-loop interactions as dynamic functional motifs.
Q24656891RNA misfolding and the action of chaperones
Q42618064RNase E action at a distance: degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteria
Q34240871Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes.
Q34141396Redox-operated genetic switches: the SoxR and OxyR transcription factors
Q35624262Regulation by RNA.
Q52568649Regulation of Global Transcription in Escherichia coli by Rsd and 6S RNA.
Q37211276Regulation of RpoS proteolysis in Escherichia coli: the response regulator RssB is a recognition factor that interacts with the turnover element in RpoS
Q43030235Regulatory RNAs in Haloferax volcanii
Q34194972Regulatory roles for small RNAs in bacteria
Q40175884Regulatory small RNAs: the key to coordinating global regulatory circuits
Q35849677RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq.
Q28140236Riboregulation by DsrA RNA: trans-actions for global economy
Q41073564Ribosomal protein S1 specifically binds to the 5' untranslated region of the Pseudomonas aeruginosa stationary-phase sigma factor rpoS mRNA in the logarithmic phase of growth
Q28603616Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
Q38344415Role of Hfq in iron-dependent and -independent gene regulation in Neisseria meningitidis.
Q26766030Role of Small Noncoding RNAs in Bacterial Metabolism
Q39680255Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli
Q24539073Roles for replichores and macrodomains in segregation of the Escherichia coli chromosome
Q39321244Roles of Regulatory RNAs for Antibiotic Resistance in Bacteria and Their Potential Value as Novel Drug Targets
Q36049793RpoS-dependent stress response and exoenzyme production in Vibrio vulnificus
Q30498342Self-organized partitioning of dynamically localized proteins in bacterial cell division
Q40397577Several Hfq-dependent alterations in physiology of Yersinia enterocolitica O:3 are mediated by derepression of the transcriptional regulator RovM.
Q34581112Shewanella oneidensis Hfq promotes exponential phase growth, stationary phase culture density, and cell survival
Q28220384Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase
Q28200768Signal transduction cascade for regulation of RpoS: temperature regulation of DsrA
Q27641658Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli
Q36668567Small RNA regulators and the bacterial response to stress
Q38187359Small RNA regulators in bacteria: powerful tools for metabolic engineering and synthetic biology
Q35133724Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs.
Q38230079Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli
Q41295271Small RNAs regulating biofilm formation and outer membrane homeostasis
Q38084831Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella
Q24651398Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli
Q42500644Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli.
Q37348337Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects
Q33558107Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies
Q53861487SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli.
Q33632463Starvation, cessation of growth and bacterial aging
Q37710717Stationary phase in gram-negative bacteria.
Q35131127Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq.
Q27672887Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract
Q35553899Structure and functional properties of prokaryotic small noncoding RNAs
Q27658064Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
Q24536928Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein
Q38707587Survival guide: Escherichia coli in the stationary phase
Q34017427Switching on and off with RNA.
Q33688009The Archaeal Lsm Protein Binds to Small RNAs
Q47910975The Brucella abortus host factor I (HF-I) protein contributes to stress resistance during stationary phase and is a major determinant of virulence in mice
Q38296490The C-terminal domain of Escherichia coli Hfq is required for regulation
Q24533360The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding
Q54016367The Escherichia coli histone-like protein HU regulates rpoS translation.
Q40943228The Hfq homolog in Legionella pneumophila demonstrates regulation by LetA and RpoS and interacts with the global regulator CsrA.
Q37545684The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coli
Q24683356The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
Q37264875The RNA chaperone Hfq is required for virulence of Bordetella pertussis
Q35943252The RNA chaperone Hfq regulates antibiotic biosynthesis in the rhizobacterium Pseudomonas aeruginosa M18.
Q34189650The RpoS-mediated general stress response in Escherichia coli
Q28216159The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs
Q38301581The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs
Q28145321The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli
Q45217038The inner membrane protein, YhiM, is necessary for Escherichia coli (E. coli) survival in acidic conditions
Q34053758The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation
Q50126760The regulation and role of the periplasmic copper, zinc superoxide dismutase of Escherichia coli
Q28288672The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA
Q24655343The small RNA GcvB regulates sstT mRNA expression in Escherichia coli
Q34571457The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism.
Q38647767The spectrum of activity of the small RNA DsrA: not so narrow after all.
Q33864299The stationary-phase morphogene bolA from Escherichia coli is induced by stress during early stages of growth.
Q27663220The structures of mutant forms of Hfq fromPseudomonas aeruginosareveal the importance of the conserved His57 for the protein hexamer organization
Q83929165This paper has been retracted.Retraction notice is found at http://nar.oxfordjournals.org/cgi/content/full/37/15/5234
Q52603392Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA‐binding protein Hfq
Q90657919Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica
Q92375921Transcription of the Subtilase Cytotoxin Gene subAB 1 in Shiga Toxin-Producing Escherichia coli Is Dependent on hfq and hns
Q36953406Transcriptional activation by MarA, SoxS and Rob of two tolC promoters using one binding site: a complex promoter configuration for tolC in Escherichia coli
Q34501223Transcriptome-Wide Identification of Hfq-Associated RNAs in Brucella suis by Deep Sequencing
Q33837698TrmL and TusA Are Necessary for rpoS and MiaA Is Required for hfq Expression in Escherichia coli
Q92732858Trouble is coming: Signaling pathways that regulate general stress responses in bacteria
Q33879789U-turns and regulatory RNAs
Q42676209Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations
Q34785700mRNA expression profiles for Escherichia coli ingested by normal and phagocyte oxidase-deficient human neutrophils
Q33807840nocoRNAc: characterization of non-coding RNAs in prokaryotes
Q37210961sRNA roles in regulating transcriptional regulators: Lrp and SoxS regulation by sRNAs
Q41207283sRNA-Mediated Control of Transcription Termination in E. coli
Q24597091sRNAs and the virulence of Salmonella enterica serovar Typhimurium
Q38193405sigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition.

Search more.