scholarly article | Q13442814 |
P819 | ADS bibcode | 2010PNAS..107.9602S |
P356 | DOI | 10.1073/PNAS.1004435107 |
P932 | PMC publication ID | 2906882 |
P698 | PubMed publication ID | 20457943 |
P5875 | ResearchGate publication ID | 44587780 |
P50 | author | Susan Gottesman | Q19642513 |
Sarah A Woodson | Q42220722 | ||
Pierre Mandin | Q58327583 | ||
P2093 | author name string | Nadim Majdalani | |
Toby Soper | |||
P2860 | cites work | The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli | Q34383062 |
Controlling mRNA stability and translation with small, noncoding RNAs | Q35737955 | ||
A rapid and convenient method for the preparation and storage of competent bacterial cells | Q36001361 | ||
Effect of salt and RNA structure on annealing and strand displacement by Hfq. | Q37393528 | ||
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs | Q39784092 | ||
Mutations that increase expression of the rpoS gene and decrease its dependence on hfq function in Salmonella typhimurium | Q39844182 | ||
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq | Q21145046 | ||
Mfold web server for nucleic acid folding and hybridization prediction | Q24498105 | ||
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein | Q24536928 | ||
Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure | Q24540168 | ||
Hfq is necessary for regulation by the untranslated RNA DsrA | Q24548921 | ||
Regulatory RNAs in bacteria | Q24595082 | ||
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene | Q24643457 | ||
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription | Q24645477 | ||
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci | Q24645507 | ||
A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures | Q24652762 | ||
Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli | Q27641658 | ||
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA | Q27658064 | ||
Global analysis of small RNA and mRNA targets of Hfq | Q28184898 | ||
Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm | Q28204689 | ||
Regulation of RpoS by a novel small RNA: the characterization of RprA | Q28204998 | ||
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli | Q28205853 | ||
Regulation and mode of action of the second small RNA activator of RpoS translation, RprA | Q28212671 | ||
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs | Q28216159 | ||
Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase | Q28220384 | ||
A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system | Q28244233 | ||
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq | Q28253347 | ||
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA | Q28257497 | ||
Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome binding | Q28266867 | ||
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs | Q28287313 | ||
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA | Q28288672 | ||
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs | Q28292183 | ||
Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA | Q28294752 | ||
Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region | Q28295584 | ||
The small RNA regulators of Escherichia coli: roles and mechanisms* | Q29618536 | ||
The bacterial Sm-like protein Hfq: a key player in RNA transactions | Q29620062 | ||
Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes | Q30461610 | ||
The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein | Q33889724 | ||
P433 | issue | 21 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 9602-9607 | |
P577 | publication date | 2010-05-10 | |
P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
P1476 | title | Positive regulation by small RNAs and the role of Hfq | |
P478 | volume | 107 |
Q55457570 | A Canonical Biophysical Model of the CsrA Global Regulator Suggests Flexible Regulator-Target Interactions. |
Q40617343 | A computational strategy for the search of regulatory small RNAs in Actinobacillus pleuropneumoniae |
Q28255704 | A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD |
Q34680627 | A method for in vivo identification of bacterial small RNA-binding proteins |
Q28546717 | A nitric oxide regulated small RNA controls expression of genes involved in redox homeostasis in Bacillus subtilis |
Q42883177 | A small RNA activates CFA synthase by isoform-specific mRNA stabilization |
Q41526489 | A small RNA serving both the Hfq and CsrA regulons |
Q35854632 | A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli. |
Q35591154 | A small, microRNA-size, ribonucleic acid regulating gene expression and development of Shiga toxin-converting bacteriophage Φ24Β. |
Q36219862 | Acidic Residues in the Hfq Chaperone Increase the Selectivity of sRNA Binding and Annealing |
Q36172268 | Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition |
Q33712153 | An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interaction |
Q41639297 | Antibacterial activity of silver nanoparticles target sara through srna-teg49, a key mediator of hfq, in staphylococcus aureus |
Q54350084 | Antitoxin DinJ influences the general stress response through transcript stabilizer CspE. |
Q30418101 | Archaeal and eukaryotic homologs of Hfq: A structural and evolutionary perspective on Sm function |
Q42753757 | Arginine Patch Predicts the RNA Annealing Activity of Hfq from Gram-Negative and Gram-Positive Bacteria |
Q34606300 | Association of RNAs with Bacillus subtilis Hfq. |
Q36400621 | Balancing gene expression without library construction via a reusable sRNA pool |
Q34061171 | Base pairing small RNAs and their roles in global regulatory networks |
Q41953572 | Biosynthesis of the antifungal haterumalide, oocydin A, in Serratia, and its regulation by quorum sensing, RpoS and Hfq. |
Q42357060 | Classic Spotlight: Hfq, from a Specific Host Factor for Phage Replication to a Global Player in Riboregulation |
Q34388505 | Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling |
Q37122110 | Conserved arginines on the rim of Hfq catalyze base pair formation and exchange |
Q42772740 | Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides |
Q30252727 | Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode |
Q38087172 | Cycling of RNAs on Hfq. |
Q36280099 | De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells |
Q34504665 | Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli |
Q34508819 | Disruption of small RNA signaling caused by competition for Hfq. |
Q46276966 | DksA and ppGpp Regulate the σS Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP. |
Q38295541 | Domain swapping between homologous bacterial small RNAs dissects processing and Hfq binding determinants and uncovers an aptamer for conditional RNase E cleavage. |
Q40736188 | DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli. |
Q24567581 | Dual RNA regulatory control of a Staphylococcus aureus virulence factor |
Q24607427 | Duplex formation between the sRNA DsrA and rpoS mRNA is not sufficient for efficient RpoS synthesis at low temperature |
Q35088012 | Dynamic competition of DsrA and rpoS fragments for the proximal binding site of Hfq as a means for efficient annealing |
Q99616572 | Early termination of the Shiga toxin transcript generates a regulatory small RNA |
Q61449803 | Enteropathogens: Tuning Their Gene Expression for Hassle-Free Survival |
Q52575121 | Enzymes Involved in Posttranscriptional RNA Metabolism in Gram-Negative Bacteria. |
Q36740865 | Exploring sRNA-mediated gene silencing mechanisms using artificial small RNAs derived from a natural RNA scaffold in Escherichia coli. |
Q40164975 | Expression of IroN, the salmochelin siderophore receptor, requires mRNA activation by RyhB small RNA homologues. |
Q98192446 | Gene autoregulation by 3' UTR-derived bacterial small RNAs |
Q28241086 | Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function |
Q28246632 | Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence |
Q39798384 | Global small RNA chaperone Hfq and regulatory small RNAs are important virulence regulators in Erwinia amylovora |
Q35624257 | Global transcriptome analysis reveals small RNAs affecting Neisseria meningitidis bacteremia. |
Q91935778 | Hfq Globally Binds and Destabilizes sRNAs and mRNAs in Yersinia pestis |
Q50030594 | Hfq and Hfq-dependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar Typhimurium |
Q29615791 | Hfq and its constellation of RNA |
Q51271782 | Hfq and three Hfq-dependent small regulatory RNAs-MgrR, RyhB and McaS-coregulate the locus of enterocyte effacement in enteropathogenic Escherichia coli. |
Q37015883 | Hfq assists small RNAs in binding to the coding sequence of ompD mRNA and in rearranging its structure |
Q28293533 | Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS |
Q40987473 | Hfq binds directly to the ribosome-binding site of IS10 transposase mRNA to inhibit translation |
Q27685299 | Hfq binds ribonucleotides in three different RNA-binding sites |
Q57260318 | Hfq chaperone brings speed dating to bacterial sRNA |
Q47104096 | Hfq links translation repression to stress-induced mutagenesis in E. coli |
Q36280714 | Hfq proximity and orientation controls RNA annealing |
Q42146755 | Hfq restructures RNA-IN and RNA-OUT and facilitates antisense pairing in the Tn10/IS10 system |
Q27677477 | Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA |
Q34927627 | Honing the message: post-transcriptional and post-translational control in attaching and effacing pathogens |
Q34103665 | Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions. |
Q34740470 | Identifying and characterizing Hfq-RNA interactions |
Q34026223 | In vivo mRNA profiling of uropathogenic Escherichia coli from diverse phylogroups reveals common and group-specific gene expression profiles |
Q38141997 | Influence of small RNAs on biofilm formation process in bacteria. |
Q40631587 | Inhibition of Phagocytic Killing of Escherichia coli in Drosophila Hemocytes by RNA Chaperone Hfq. |
Q35190035 | Integrated stress responses in Salmonella |
Q28289704 | Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA |
Q28583172 | In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways |
Q35852136 | Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes |
Q34510047 | Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity |
Q42174762 | Major role for mRNA binding and restructuring in sRNA recruitment by Hfq. |
Q27680705 | Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching |
Q90271711 | Mechanism for coordinate regulation of rpoS by sRNA-sRNA interaction in Escherichia coli |
Q64928887 | Mechanisms for Hfq-Independent Activation of rpoS by DsrA, a Small RNA, in Escherichia coli. |
Q34811166 | Modification of the RpoS network with a synthetic small RNA. |
Q40280690 | Molecular mechanism of mRNA repression in trans by a ProQ-dependent small RNA. |
Q34322538 | Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets |
Q38199289 | Ménage à trois: post-transcriptional control of the key enzyme for cell envelope synthesis by a base-pairing small RNA, an RNase adaptor protein, and a small RNA mimic |
Q50561896 | Natural RNA Polymerase Aptamers Regulate Transcription in E. coli. |
Q36901756 | New developments in post-transcriptional regulation of operons by small RNAs |
Q34271960 | Non-coding sRNAs regulate virulence in the bacterial pathogen Vibrio cholerae. |
Q42291805 | Nucleoid and cytoplasmic localization of small RNAs in Escherichia coli. |
Q89824505 | On a stake-out: Mycobacterial small RNA identification and regulation |
Q38153167 | On the importance of cotranscriptional RNA structure formation |
Q38935351 | Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding |
Q33352676 | Pathway engineering via quorum sensing and sRNA riboregulators-interconnected networks and controllers |
Q34056874 | Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile |
Q35859490 | Polyamines Stimulate the Level of the σ38 Subunit (RpoS) of Escherichia coli RNA Polymerase, Resulting in the Induction of the Glutamate Decarboxylase-dependent Acid Response System via the gadE Regulon |
Q34372359 | Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq. |
Q37254225 | Post-transcriptional activation of a diguanylate cyclase by quorum sensing small RNAs promotes biofilm formation in Vibrio cholerae. |
Q57344163 | Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus |
Q90138932 | Prevalence of small base-pairing RNAs derived from diverse genomic loci |
Q34526027 | Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA. |
Q35089000 | Protein mistranslation protects bacteria against oxidative stress |
Q90560683 | Proteins That Chaperone RNA Regulation |
Q28742043 | Quantifying the sequence-function relation in gene silencing by bacterial small RNAs |
Q37806517 | RNA folding in living cells |
Q38324094 | RNase footprinting of protein binding sites on an mRNA target of small RNAs |
Q35088007 | Rapid binding and release of Hfq from ternary complexes during RNA annealing |
Q27009044 | Regulation by small RNAs in bacteria: expanding frontiers |
Q42713382 | Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA |
Q36228436 | Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY. |
Q34122762 | Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation |
Q48058614 | Roles of Hfq in the stress adaptation and virulence in fish pathogen Vibrio alginolyticus and its potential application as a target for live attenuated vaccine |
Q36709429 | Small RNA Regulation of TolC, the Outer Membrane Component of Bacterial Multidrug Transporters |
Q37618005 | Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E. |
Q21131371 | Small RNA sX13: a multifaceted regulator of virulence in the plant pathogen Xanthomonas |
Q36008348 | Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella |
Q37878988 | Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species |
Q38230079 | Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli |
Q38084831 | Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella |
Q93270719 | Stem-loops direct precise processing of 3' UTR-derived small RNA MicL |
Q42324804 | Structural flexibility of RNA as molecular basis for Hfq chaperone function |
Q35131127 | Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq. |
Q27672887 | Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract |
Q34661444 | Structural model of an mRNA in complex with the bacterial chaperone Hfq. |
Q41430016 | Study of E. coli Hfq's RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents |
Q57072123 | Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E |
Q28081126 | Target activation by regulatory RNAs in bacteria |
Q28286931 | Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA |
Q34428089 | The Listeria Small RNA Rli27 Regulates a Cell Wall Protein inside Eukaryotic Cells by Targeting a Long 5'-UTR Variant |
Q37545684 | The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coli |
Q54261857 | The Pseudomonas aeruginosa PrrF1 and PrrF2 Small Regulatory RNAs Promote 2-Alkyl-4-Quinolone Production through Redundant Regulation of the antR mRNA. |
Q30470671 | The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing |
Q48529084 | The RNA chaperone, Hfq, controls two luxR-type regulators and plays a key role in pathogenesis and production of antibiotics in Serratia sp. ATCC 39006. |
Q34189650 | The RpoS-mediated general stress response in Escherichia coli |
Q34026379 | The Vibrio cholerae quorum sensing response is mediated by Hfq-dependent sRNA/mRNA base pairing interactions. |
Q90196530 | The bacterial endoribonuclease RNase E can cleave RNA in the absence of the RNA chaperone Hfq |
Q37995707 | The bacterial protein Hfq: much more than a mere RNA-binding factor |
Q42103322 | The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq. |
Q24624170 | The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript |
Q26852007 | The interplay of Hfq, poly(A) polymerase I and exoribonucleases at the 3' ends of RNAs resulting from Rho-independent termination: A tentative model |
Q37142772 | The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501 |
Q35107832 | The phzA2-G2 transcript exhibits direct RsmA-mediated activation in Pseudomonas aeruginosa M18. |
Q21131294 | The small RNA SgrS: roles in metabolism and pathogenesis of enteric bacteria |
Q38647767 | The spectrum of activity of the small RNA DsrA: not so narrow after all. |
Q90657919 | Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica |
Q35987861 | Transcriptomic analysis of the stationary phase response regulator SpdR in Caulobacter crescentus |
Q92732858 | Trouble is coming: Signaling pathways that regulate general stress responses in bacteria |
Q94461584 | Tunable genetic devices through simultaneous control of transcription and translation |
Q61806336 | sRNA Target Prediction Organizing Tool (SPOT) Integrates Computational and Experimental Data To Facilitate Functional Characterization of Bacterial Small RNAs |
Q41207283 | sRNA-Mediated Control of Transcription Termination in E. coli |
Q35751282 | sRNA-Mediated Regulation of P-Fimbriae Phase Variation in Uropathogenic Escherichia coli. |
Q24597091 | sRNAs and the virulence of Salmonella enterica serovar Typhimurium |
Search more.