Quantifying the sequence-function relation in gene silencing by bacterial small RNAs

scientific article (publication date: 26 July 2011)

Quantifying the sequence-function relation in gene silencing by bacterial small RNAs is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2011PNAS..10812473H
P356DOI10.1073/PNAS.1100432108
P3181OpenCitations bibliographic resource ID4898058
P932PMC publication ID3145688
P698PubMed publication ID21742981
P5875ResearchGate publication ID51480530

P50authorTerence HwaQ30505121
P2093author name stringMin Huang
Junbai Li
Yue Hao
David W Erickson
Hualin Shi
Yingwu Huang
Zhongge J Zhang
P2860cites workDeep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, HfqQ21145046
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coliQ24536169
Predicting oligonucleotide affinity to nucleic acid targetsQ24539440
Hfq is necessary for regulation by the untranslated RNA DsrAQ24548921
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coliQ24563596
Regulatory RNAs in bacteriaQ24595082
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesiclesQ24647335
Spot 42 RNA mediates discoordinate expression of the E. coli galactose operonQ24674172
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coliQ24684800
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiationQ28252581
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by HfqQ28253347
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNAQ28257497
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio choleraeQ28270975
Effect of RyhB small RNA on global iron use in Escherichia coliQ28275120
A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNAQ28277876
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNAQ28288672
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase systemQ28291273
RNA antitoxinsQ28294158
Mechanism of RNA silencing by Hfq-binding small RNAsQ28294833
Small RNA binding to 5' mRNA coding region inhibits translational initiationQ28305161
Quantitative characteristics of gene regulation by small RNAQ28469313
The small RNA regulators of Escherichia coli: roles and mechanisms*Q29618536
Small non-coding RNAs and the bacterial outer membraneQ34000397
Positive regulation by small RNAs and the role of HfqQ34006620
Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulatorQ34107548
Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.Q34115908
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Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNAQ34179717
Novel sequence-based method for identifying transcription factor binding sites in prokaryotic genomesQ34310649
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Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide designQ36740097
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A quantitative comparison of sRNA-based and protein-based gene regulationQ36973020
Dynamic features of gene expression control by small regulatory RNAs.Q37249990
Biological principles of microRNA-mediated regulation: shared themes amid diversityQ37293110
Small RNAs establish gene expression thresholdsQ37303336
Computational prediction of sRNAs and their targets in bacteria.Q37671500
Prediction of antisense oligonucleotide binding affinity to a structured RNA targetQ38321843
Quantitative specificity of the Mnt repressorQ38343476
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAsQ39784092
Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sitesQ41373606
Regulation of gene expression by small non-coding RNAs: a quantitative viewQ41585774
Computational approaches for the discovery of bacterial small RNAsQ44932493
On the selection and evolution of regulatory DNA motifsQ46295487
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control.Q53647064
Base substitution mutants of the lac operator: in vivo and in vitro affinities for lac repressor.Q54785600
P433issue30
P407language of work or nameEnglishQ1860
P921main subjectgene silencingQ1431332
P304page(s)12473-12478
P577publication date2011-07-08
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleQuantifying the sequence-function relation in gene silencing by bacterial small RNAs
P478volume108

Reverse relations

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