Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites.

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Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites. is …
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scholarly articleQ13442814

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P356DOI10.1093/NAR/GKT1139
P932PMC publication ID3936740
P698PubMed publication ID24234441
P5875ResearchGate publication ID258529624

P50authorHoward M. SalisQ42402423
P2093author name stringAmin Espah Borujeni
Anirudh S Channarasappa
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Structured mRNAs regulate translation initiation by binding to the platform of the ribosomeQ27648434
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structureQ27860806
Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader regionQ28295584
An antisense RNA inhibits translation by competing with standby ribosomesQ28302101
Quantifying the sequence-function relation in gene silencing by bacterial small RNAsQ28742043
A high-throughput screen for synthetic riboswitches reveals mechanistic insights into their functionQ28762830
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairsQ29617637
Design principles for riboswitch functionQ33432715
Induced fit in RNA-protein recognitionQ34052500
Fine-tuning gene networks using simple sequence repeats.Q34395078
Ribozyme-based insulator parts buffer synthetic circuits from genetic contextQ34433193
Structure of the 30S translation initiation complex.Q34596426
Composability of regulatory sequences controlling transcription and translation in Escherichia coliQ34909198
Folding energy landscape of the thiamine pyrophosphate riboswitch aptamerQ35749577
Entropic origin of Mg2+-facilitated RNA foldingQ35779053
Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitchQ35807600
Genetic switchboard for synthetic biology applicationsQ35889325
Multiple factors dictate target selection by Hfq-binding small RNAsQ35931768
Ribosomal protein S1 unwinds double-stranded RNA in multiple stepsQ36221990
Contextualizing context for synthetic biology--identifying causes of failure of synthetic biological systemsQ36230279
De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cellsQ36280099
Dual-acting riboswitch control of translation initiation and mRNA decayQ36483634
Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature dataQ36727373
A structural view of translation initiation in bacteriaQ37326466
Automated design of synthetic ribosome binding sites to control protein expressionQ37436696
Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAsQ37587211
New insights into riboswitch regulation mechanismsQ37863212
The Escherichia coli threonyl-tRNA synthetase gene contains a split ribosomal binding site interrupted by a hairpin structure that is essential for autoregulationQ38332568
Comparison of mRNA features affecting translation initiation and reinitiation.Q41431209
Structure and structural variations of the Escherichia coli 30 S ribosomal subunit as revealed by three-dimensional cryo-electron microscopyQ41632921
Heterogeneous pathways and timing of factor departure during translation initiationQ42484795
Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III.Q42590004
Reprogramming bacteria to seek and destroy an herbicideQ42776359
Model-driven engineering of RNA devices to quantitatively program gene expressionQ46041667
Rationally designed families of orthogonal RNA regulators of translationQ46091999
Unfolding of mRNA secondary structure by the bacterial translation initiation complexQ46838029
Translation enhancer improves the ribosome liberation from translation initiation.Q47828153
Quantitative estimation of activity and quality for collections of functional genetic elementsQ48733771
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P304page(s)2646-2659
P577publication date2013-11-14
P1433published inNucleic Acids ResearchQ135122
P1476titleTranslation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
P478volume42

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