A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures

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A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2000PNAS...97.9919L
P356DOI10.1073/PNAS.170281497
P3181OpenCitations bibliographic resource ID2072037
P932PMC publication ID27626
P698PubMed publication ID10954740
P5875ResearchGate publication ID12365745

P2093author name stringM Belfort
R A Lease
P2860cites workThe small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coliQ24563821
Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNAQ24568364
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple lociQ24645507
Circularization of mRNA by eukaryotic translation initiation factorsQ28279463
The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNAQ28304935
Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmidQ29614535
Small RNAs in Escherichia coli.Q33539353
Database of non-canonical base pairs found in known RNA structuresQ33610410
Noncoding RNA genesQ33801550
The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) proteinQ33889724
3'-terminal labelling of RNA with T4 RNA ligaseQ34273342
Escherichia coli protein analogs StpA and H-NS: regulatory loops, similar and disparate effects on nucleic acid dynamicsQ35846232
Probing the structure of RNAs in solutionQ38181797
T4 RNA Ligase joins 2'-deoxyribonucleoside 3',5'-bisphosphates to oligodeoxyribonucleotidesQ38357930
Use of cis- and trans-ribozymes to remove 5' and 3' heterogeneities from milligrams of in vitro transcribed RNA.Q39715689
Mutations that increase expression of the rpoS gene and decrease its dependence on hfq function in Salmonella typhimuriumQ39844182
Specificity of the S1 nuclease from Aspergillus oryzaeQ39957475
Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coliQ41181646
H-NS: a modulator of environmentally regulated gene expression.Q41462412
Molecular aspects of the E. coli nucleoid protein, H-NS: a central controller of gene regulatory networksQ41726003
SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).Q42108460
Analysis of the in vivo decay of the Escherichia coli dicistronic pyrF-orfF transcript: evidence for multiple degradation pathwaysQ42656645
T4 ribonucleic acid ligase joins single-strand oligo(deoxyribonucleotides).Q54557522
Genetic and molecular analysis of RNA splicing in Escherichia coliQ59622212
Enzymatic RNA sequencingQ69127602
P433issue18
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)9919-24
P577publication date2000-08-29
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleA trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures
P478volume97

Reverse relations

cites work (P2860)
Q38333799A multifactor regulatory circuit involving H-NS, VirF and an antisense RNA modulates transcription of the virulence gene icsA of Shigella flexneri.
Q48194060Alternative pathways for Escherichia coli biofilm formation revealed by sRNA overproduction.
Q39679366An N-terminally truncated RpoS (sigma(S)) protein in Escherichia coli is active in vivo and exhibits normal environmental regulation even in the absence of rpoS transcriptional and translational control signals
Q38373563An assessment of bacterial small RNA target prediction programs
Q37513682Antisense RNA regulation by stable complex formation in the Enterococcus faecalis plasmid pAD1 par addiction system
Q34129310Antisense-RNA regulation and RNA interference
Q34443429Applications of DNA microarrays in microbial systems
Q34409384Bacterial small RNA regulators
Q34061171Base pairing small RNAs and their roles in global regulatory networks
Q92525223Cell-Free Synthetic Biology Platform for Engineering Synthetic Biological Circuits and Systems
Q41123093Characterization of MicA interactions suggests a potential novel means of gene regulation by small non-coding RNAs.
Q40130460Controlled Expression of an rpoS Antisense RNA Can Inhibit RpoS Function in Escherichia coli
Q27674771Cooperation of Escherichia coli Hfq hexamers in DsrA binding
Q24684800Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
Q36120284DNA microarrays--techniques and applications in microbial systems.
Q36280099De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells
Q34231842Describing the structural robustness landscape of bacterial small RNAs.
Q47194252Design rules of synthetic non-coding RNAs in bacteria
Q34316573DksA affects ppGpp induction of RpoS at a translational level
Q40736188DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli.
Q24567581Dual RNA regulatory control of a Staphylococcus aureus virulence factor
Q33750947Effect of overexpression of small non-coding DsrA RNA on multidrug efflux in Escherichia coli
Q37393528Effect of salt and RNA structure on annealing and strand displacement by Hfq.
Q28267834Engineered riboregulators enable post-transcriptional control of gene expression
Q54256188Gene network analysis identifies a central post-transcriptional regulator of cellular stress survival.
Q37658736Gene regulation and molecular toxicology
Q39418355Gene regulation by H-NS as a function of growth conditions depends on chromosomal position in Escherichia coli
Q35132362Global repression of host-associated genes of the Lyme disease spirochete through post-transcriptional modulation of the alternative sigma factor RpoS
Q24548921Hfq is necessary for regulation by the untranslated RNA DsrA
Q29619904Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction
Q34473835How to find small non-coding RNAs in bacteria
Q24684824Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
Q24540168Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure
Q24683587In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA
Q28211455Interactions of the non-coding RNA DsrA and RpoS mRNA with the 30 S ribosomal subunit
Q50070212Intragenic promotor-like sites in the genome of Escherichia coli discovery and functional implication
Q36520912Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme
Q35852136Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes
Q38107681Key role of lipids in heat stress management.
Q34510047Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity
Q24679480Limited role for the DsrA and RprA regulatory RNAs in rpoS regulation in Salmonella enterica
Q34780379Low-temperature sensors in bacteria
Q34192636Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation
Q37638237Messenger RNA Turnover Processes in Escherichia coli, Bacillus subtilis, and Emerging Studies in Staphylococcus aureus
Q34883490Microarrays for identifying binding sites and probing structure of RNAs
Q30487595Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli
Q34811166Modification of the RpoS network with a synthetic small RNA.
Q21342831Molecular processes in biological thermosensation
Q35931768Multiple factors dictate target selection by Hfq-binding small RNAs
Q34455262NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs
Q64263275Nucleoid-Associated Protein HU: A Lilliputian in Gene Regulation of Bacterial Virulence
Q37392501Poly(A)-assisted RNA decay and modulators of RNA stability
Q34006620Positive regulation by small RNAs and the role of Hfq
Q51393409Positive regulatory dynamics by a small noncoding RNA: speeding up responses under temperature stress.
Q50079191Predicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatProm
Q34369421Proteome analysis of the UVB-resistant marine bacterium Photobacterium angustum S14
Q34510098Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction
Q35949964Quorum sensing in Escherichia coli is signaled by AI-2/LsrR: effects on small RNA and biofilm architecture.
Q36470934RNA synthetic biology
Q24603023RNApredator: fast accessibility-based prediction of sRNA targets
Q35624262Regulation by RNA.
Q90249916Regulatory non-coding sRNAs in bacterial metabolic pathway engineering
Q40175884Regulatory small RNAs: the key to coordinating global regulatory circuits
Q50913509Resistance to environmental stress requires the RNA chaperones CspC and CspE.
Q59126981Revised role for Hfq bacterial regulator on DNA topology
Q28140236Riboregulation by DsrA RNA: trans-actions for global economy
Q26769016Riboregulation of bacterial and archaeal transposition
Q54278546Riboregulation of the bacterial actin-homolog MreB by DsrA small noncoding RNA.
Q41073564Ribosomal protein S1 specifically binds to the 5' untranslated region of the Pseudomonas aeruginosa stationary-phase sigma factor rpoS mRNA in the logarithmic phase of growth
Q28603616Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
Q36197324Salmonella stress management and its relevance to behaviour during intestinal colonisation and infection
Q28220384Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase
Q28200768Signal transduction cascade for regulation of RpoS: temperature regulation of DsrA
Q38230079Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli
Q37348337Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects
Q39361630Stationary-phase regulation of RpoS translation in Escherichia coli
Q35553899Structure and functional properties of prokaryotic small noncoding RNAs
Q45592804Subgenomic RNA as a riboregulator: negative regulation of RNA replication by Barley yellow dwarf virus subgenomic RNA 2.
Q38707587Survival guide: Escherichia coli in the stationary phase
Q34017427Switching on and off with RNA.
Q33958771Synthetic biology: applications come of age
Q37224748Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress
Q36226404Systematic characterization of artificial small RNA-mediated inhibition of Escherichia coli growth
Q40943228The Hfq homolog in Legionella pneumophila demonstrates regulation by LetA and RpoS and interacts with the global regulator CsrA.
Q36470338The RNA binding protein Hfq interacts specifically with tRNAs.
Q39750811The Small RNA DsrA Influences the Acid Tolerance Response and Virulence of Salmonella enterica Serovar Typhimurium.
Q91650136The architects of bacterial DNA bridges: a structurally and functionally conserved family of proteins
Q34128081The bacterial histone-like protein HU specifically recognizes similar structures in all nucleic acids. DNA, RNA, and their hybrids
Q34835579The bacterial regulatory protein H-NS--a versatile modulator of nucleic acid structures
Q42323312The dynamic mechanism of noisy signal decoding in gene regulation
Q42282508The free-energy cost of interaction between DNA loops
Q89865029The impact of leadered and leaderless gene structures on translation efficiency, transcript stability, and predicted transcription rates in Mycobacterium smegmatis
Q47767055The important conformational plasticity of DsrA sRNA for adapting multiple target regulation
Q24607004The non-coding RNAs as riboregulators
Q34156086The phage lambda CII transcriptional activator carries a C-terminal domain signaling for rapid proteolysis
Q40763627The protease Lon and the RNA-binding protein Hfq reduce silencing of the Escherichia coli bgl operon by H-NS.
Q28280186The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coli
Q34571457The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism.
Q52603392Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA‐binding protein Hfq
Q36859245Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation
Q36600386Translation initiation and the fate of bacterial mRNAs
Q37606918Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites.
Q24684847Translational control and target recognition by Escherichia coli small RNAs in vivo
Q37051423Twins, quadruplexes, and more: functional aspects of native and engineered RNA self-assembly in vivo
Q37210961sRNA roles in regulating transcriptional regulators: Lrp and SoxS regulation by sRNAs

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