Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress

scientific article published on 27 July 2013

Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKT651
P932PMC publication ID3794604
P698PubMed publication ID23892399
P5875ResearchGate publication ID253333965

P50authorSavvas NicolaouQ59680398
P2093author name stringEleftherios T Papoutsakis
Stefan M Gaida
Dinesh C Indurthi
Mohab A Al-Hinai
P2860cites workpH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coliQ24539204
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Solventogenesis in Clostridium acetobutylicum fermentations related to carboxylic acid and proton concentrationsQ81545562
Perturbation of anion balance during inhibition of growth of Escherichia coli by weak acidsQ39564551
Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase systemQ39679110
Gene expression profiling of the pH response in Escherichia coliQ39680649
Modelling the growth rate of Escherichia coli as a function of pH and lactic acid concentrationQ39802346
Nucleotide sequence of the Escherichia coli cad operon: a system for neutralization of low extracellular pH.Q39933772
Regulation of katF and katE in Escherichia coli K-12 by weak acidsQ39935387
H-NS: a modulator of environmentally regulated gene expression.Q41462412
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivityQ41863185
Inactivation of σE and σG in Clostridium acetobutylicum illuminates their roles in clostridial-cell-form biogenesis, granulose synthesis, solventogenesis, and spore morphogenesisQ42706860
RcsB plays a central role in H-NS-dependent regulation of motility and acid stress resistance in Escherichia coliQ43077368
GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/GadW-specific binding sitesQ45745812
Acid response of exponentially growing Escherichia coli K-12.Q46843405
Transcriptional analysis of the acid-inducible asr gene in enterobacteriaQ50097513
Novel aspects of the acid response network of E. coli K-12 are revealed by a study of transcriptional dynamics.Q54383140
Signal transduction cascade for regulation of RpoS: temperature regulation of DsrAQ28200768
Regulation and mode of action of the second small RNA activator of RpoS translation, RprAQ28212671
Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymeraseQ28220384
The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coliQ28280186
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNAQ28289704
Cellular defenses against superoxide and hydrogen peroxideQ29615306
Gene splicing and mutagenesis by PCR-driven overlap extensionQ29615338
Engineering complex phenotypes in industrial strainsQ33301464
Starvation for different nutrients in Escherichia coli results in differential modulation of RpoS levels and stabilityQ33700399
Coexisting/Coexpressing Genomic Libraries (CoGeL) identify interactions among distantly located genetic loci for developing complex microbial phenotypesQ34041452
Tools for genome-wide strain design and constructionQ34167109
The RpoS-mediated general stress response in Escherichia coliQ34189650
Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradationQ34192636
Decrypting the H-NS-dependent regulatory cascade of acid stress resistance in Escherichia coliQ34321853
Glutamate decarboxylase-dependent acid resistance in orally acquired bacteria: function, distribution and biomedical implications of the gadBC operon.Q34418585
Mechanisms of acid resistance in enterohemorrhagic Escherichia coliQ35192892
Acid resistance in Escherichia coli.Q35215224
A systems biology approach sheds new light on Escherichia coli acid resistanceQ35224307
H-NS: a universal regulator for a dynamic genomeQ35752413
Intracellular copper does not catalyze the formation of oxidative DNA damage in Escherichia coliQ35759338
Escherichia coli acid resistance: tales of an amateur acidophileQ35923268
Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH.Q36106069
Escherichia coli glutamate- and arginine-dependent acid resistance systems increase internal pH and reverse transmembrane potentialQ37494481
Metabolic engineering of Saccharomyces cerevisiae for production of carboxylic acids: current status and challenges.Q37536188
A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediationQ37719837
Molecular targets of oxidative stress.Q37839122
Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.Q38302084
Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymeraseQ38308470
Antagonistic role of H-NS and GadX in the regulation of the glutamate decarboxylase-dependent acid resistance system in Escherichia coliQ38328783
Negative regulation by RpoS: a case of sigma factor competitionQ38332573
The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivoQ38341060
RcsB is required for inducible acid resistance in Escherichia coli and acts at gadE-dependent and -independent promotersQ38438706
Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicumQ38508084
Modelling the growth limits (growth/no growth interface) of Escherichia coli as a function of temperature, pH, lactic acid concentration, and water activity.Q39560633
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P433issue18
P407language of work or nameEnglishQ1860
P304page(s)8726-8737
P577publication date2013-07-27
P1433published inNucleic Acids ResearchQ135122
P1476titleSynthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress
P478volume41

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