Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction

scientific article

Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKU889
P932PMC publication ID4231754
P698PubMed publication ID25294829
P5875ResearchGate publication ID266627319

P50authorDaniel JostQ39865867
P2093author name stringErel Levine
Anat Lavi-Itzkovitz
Neil Peterman
P2860cites workDeterminant of cistron specificity in bacterial ribosomesQ22122424
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome bindingQ24533360
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coliQ24536169
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.Q24536474
Target prediction for small, noncoding RNAs in bacteriaQ24544245
Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destructionQ24546344
GadY, a small-RNA regulator of acid response genes in Escherichia coliQ24563573
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coliQ24563596
Regulatory RNAs in bacteriaQ24595082
Intrinsic noise in gene regulatory networksQ24630461
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesisQ24633959
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple lociQ24645507
The Vienna RNA websuiteQ24646014
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUAQ24649054
A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structuresQ24652762
Small silencing RNAs: an expanding universeQ24653997
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sitesQ24672099
Spot 42 RNA mediates discoordinate expression of the E. coli galactose operonQ24674172
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coliQ24684800
Translational control and target recognition by Escherichia coli small RNAs in vivoQ24684847
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Stochastic gene expression in a single cellQ28131784
Vienna RNA secondary structure serverQ28131816
Interactions of the non-coding RNA DsrA and RpoS mRNA with the 30 S ribosomal subunitQ28211455
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experimentsQ28236560
Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control.Q53647064
Theoretical analysis of catalytic-sRNA-mediated gene silencing.Q54429133
Efficient degradation and expression prioritization with small RNAs.Q54433113
Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq.Q54522553
The host factor required for RNA phage Qbeta RNA replication in vitro. Intracellular location, quantitation, and purification by polyadenylate-cellulose chromatographyQ67508261
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiationQ28252581
Micros for microbes: non-coding regulatory RNAs in bacteriaQ28252632
Interactions of ribosomal protein S1 with DsrA and rpoS mRNAQ28256030
Effect of RyhB small RNA on global iron use in Escherichia coliQ28275120
The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coliQ28280186
Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decodingQ28286135
Mechanism of RNA silencing by Hfq-binding small RNAsQ28294833
An antisense RNA inhibits translation by competing with standby ribosomesQ28302101
Small RNA binding to 5' mRNA coding region inhibits translational initiationQ28305161
Quantitative characteristics of gene regulation by small RNAQ28469313
mRNA turnover rate limits siRNA and microRNA efficacyQ28914778
Intrinsic and extrinsic contributions to stochasticity in gene expressionQ29615956
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elementsQ29615996
Regulation of noise in the expression of a single geneQ29616626
Stochastic mechanisms in gene expressionQ29617407
Fast evaluation of fluctuations in biochemical networks with the linear noise approximationQ31022744
Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulatorQ34107548
Summing up the noise in gene networksQ34293479
Engineering and characterization of a superfolder green fluorescent proteinQ34478574
Thermodynamics of RNA-RNA bindingQ34489593
Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularityQ34510047
Lost in translation: the influence of ribosomes on bacterial mRNA decayQ36303663
Regulating the many to benefit the few: role of weak small RNA targets.Q36770458
Hfq structure, function and ligand bindingQ36774884
A quantitative comparison of sRNA-based and protein-based gene regulationQ36973020
Small RNAs establish gene expression thresholdsQ37303336
Automated design of synthetic ribosome binding sites to control protein expressionQ37436696
Small RNA biology is systems biologyQ37832305
Antisense micF RNA and 5'-UTR of the target ompF RNA: phylogenetic conservation of primary and secondary structuresQ38349628
Spanning high-dimensional expression space using ribosome-binding site combinatoricsQ40366148
Host factor for coliphage Qβ RNA replication: Presence in procaryotes and association with the 30S ribosomal subunit inEscherichia coliQ40792012
Regulation of gene expression by small non-coding RNAs: a quantitative viewQ41585774
Regulation by small RNAs via coupled degradation: mean-field and variational approaches.Q44969271
Analysis of RNA decay, processing, and polyadenylation in Escherichia coli and other prokaryotesQ46151939
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue19
P407language of work or nameEnglishQ1860
P304page(s)12200-12211
P577publication date2014-10-07
P1433published inNucleic Acids ResearchQ135122
P1476titleQuantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction
P478volume42

Reverse relations

cites work (P2860)
Q58761799Codon usage and modular interactions between messenger RNA coding regions and small RNAs in Escherichia coli
Q47332263Dynamics of translation can determine the spatial organization of membrane-bound proteins and their mRNA.
Q33598537Genetic variation in the 3'-untranslated region of PAK1 influences schizophrenia susceptibility
Q36224652Hierarchical Post-transcriptional Regulation of Colicin E2 Expression in Escherichia coli
Q27346857Quantification of the gene silencing performances of rationally-designed synthetic small RNAs

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