GadY, a small-RNA regulator of acid response genes in Escherichia coli

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GadY, a small-RNA regulator of acid response genes in Escherichia coli is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JB.186.20.6698-6705.2004
P3181OpenCitations bibliographic resource ID3753477
P932PMC publication ID522195
P698PubMed publication ID15466020
P5875ResearchGate publication ID8249681

P50authorGisela StorzQ29470553
P2093author name stringJu-Gyeong Kang
Jason A Opdyke
P2860cites workThe Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome bindingQ24533360
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coliQ24536169
Identification of novel small RNAs using comparative genomics and microarraysQ24601229
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Spot 42 RNA mediates discoordinate expression of the E. coli galactose operonQ24674172
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coliQ24684800
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Global analysis of small RNA and mRNA targets of HfqQ28184898
Regulation of RpoS by a novel small RNA: the characterization of RprAQ28204998
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genomeQ28205081
Novel small RNA-encoding genes in the intergenic regions of Escherichia coliQ28205853
Regulation and mode of action of the second small RNA activator of RpoS translation, RprAQ28212671
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interactionQ29619904
An activator of glutamate decarboxylase genes regulates the expression of enteropathogenic Escherichia coli virulence genes through control of the plasmid-encoded regulator, Per.Q30716869
Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW)Q34321388
The microRNA world: small is mightyQ35559723
Controlling mRNA stability and translation with small, noncoding RNAsQ35737955
pH-Dependent Modulation of Cyclic AMP Levels and GadW-Dependent Repression of RpoS Affect Synthesis of the GadX Regulator andEscherichia coliAcid ResistanceQ37062814
Control of acid resistance in Escherichia coliQ39496012
Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase systemQ39679110
Genetic mapping of katF, a locus that with katE affects the synthesis of a second catalase species in Escherichia coliQ39966075
mRNA degradation by processive 3'-5' exoribonucleases in vitro and the implications for prokaryotic mRNA decay in vivoQ44119539
GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12.Q44563370
Anticipating an alkaline stress through the Tor phosphorelay system in Escherichia coli.Q51680573
Mini-λ: a tractable system for chromosome and BAC engineeringQ51812826
Decarboxylation of gamma-hydroxyglutamate by glutamate decarboxylase of Escherichia coli (ATCC 11246).Q54445725
Overexpression, purification, and properties of Escherichia coli ribonuclease IIQ70889882
fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complexQ74027600
P433issue20
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)6698-705
P577publication date2004-10-01
P1433published inJournal of BacteriologyQ478419
P1476titleGadY, a small-RNA regulator of acid response genes in Escherichia coli
P478volume186

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cites work (P2860)
Q92257337A Novel Noncoding RNA dsr11 Involved in Heat Stress Tolerance in Deinococcus radiodurans
Q33653390A broadening world of bacterial small RNAs
Q41949572A cis-encoded sRNA, Hfq and mRNA secondary structure act independently to suppress IS200 transposition
Q34296188A complex network of small non-coding RNAs regulate motility in Escherichia coli
Q28255704A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
Q34040392A eukaryotic-like 3' untranslated region in Salmonella enterica hilD mRNA.
Q94452341A framework for the computational prediction and analysis of non-coding RNAs in microbial environmental populations and their experimental validation
Q28244233A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system
Q21093388A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
Q24631171A screen for non-coding RNA in Mycobacterium tuberculosis reveals a cAMP-responsive RNA that is expressed during infection
Q42883177A small RNA activates CFA synthase by isoform-specific mRNA stabilization
Q35854632A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli.
Q28299894A small bacterial RNA regulates a putative ABC transporter
Q35224307A systems biology approach sheds new light on Escherichia coli acid resistance
Q35096256ATP requirement for acidic resistance in Escherichia coli
Q60958281AU-Rich Long 3' Untranslated Region Regulates Gene Expression in Bacteria
Q24633108Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families
Q37746998Acid stress response in enteropathogenic gammaproteobacteria: an aptitude for survival
Q34145427Acis-Encoded Antisense Small RNA Regulated by the HP0165-HP0166 Two-Component System Controls Expression ofureBinHelicobacter pylori
Q30995484Activators of the glutamate-dependent acid resistance system alleviate deleterious effects of YidC depletion in Escherichia coli
Q56344646After the fact(or): post-transcriptional gene regulation in enterohemorrhagic O157:H7
Q48194060Alternative pathways for Escherichia coli biofilm formation revealed by sRNA overproduction.
Q42132536An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding
Q34549972An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.
Q41575569Analysis of the regulated transcriptome of Neisseria meningitidis in human blood using a tiling array
Q36858009Antagonistic Roles for GcvA and GcvB in hdeAB Expression in Escherichia coli
Q42276914Antisense transcription is pervasive but rarely conserved in enteric bacteria
Q45903544ArtR, a novel sRNA of Staphylococcus aureus, regulates α-toxin expression by targeting the 5' UTR of sarT mRNA.
Q34865022Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria.
Q34537427Bacterial antisense RNAs: how many are there, and what are they doing?
Q37389545Bacterial chromosome-encoded small regulatory RNAs
Q27692531Bacterial small RNA regulators: versatile roles and rapidly evolving variations
Q55160826CRP-cAMP mediates silencing of Salmonella virulence at the post-transcriptional level.
Q37480965Canonical and non-canonical EcfG sigma factors control the general stress response in Rhizobium etli
Q28268374Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of ryhB in biofilm formation
Q33946841Characterization of enterohemorrhagic Escherichia coli strains based on acid resistance phenotypes
Q43065961Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli
Q28254721Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae
Q35722762Cis-Antisense Transcription Gives Rise to Tunable Genetic Switch Behavior: A Mathematical Modeling Approach
Q34400220Complex intra-operonic dynamics mediated by a small RNA in Streptomyces coelicolor.
Q30579994Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032
Q38327247Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
Q41962413Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales
Q36340064Conserved small protein associates with the multidrug efflux pump AcrB and differentially affects antibiotic resistance
Q36071870Constitutive expression of the sRNA GadY decreases acetate production and improves E. coli growth
Q28742620CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers
Q38261031Current status of antisense RNA-mediated gene regulation in Listeria monocytogenes
Q37031893Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli.
Q34001909Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli
Q24556624Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
Q34699793Developmental expression of non-coding RNAs in Chlamydia trachomatis during normal and persistent growth
Q37200460Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress
Q34798228Effects of different target sites on antisense RNA-mediated regulation of gene expression
Q52575121Enzymes Involved in Posttranscriptional RNA Metabolism in Gram-Negative Bacteria.
Q25256852Experimental approaches to identify non-coding RNAs
Q33575820Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi
Q28247175Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli
Q29541839From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome
Q35217099Functional characterization of bacterial sRNAs using a network biology approach
Q41936173Gains and unexpected lessons from genome-scale promoter mapping.
Q54256188Gene network analysis identifies a central post-transcriptional regulator of cellular stress survival.
Q27316993Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli
Q41863185Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
Q24633132Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts
Q41926065Global Mapping of Small RNA-Target Interactions in Bacteria
Q57795908Global analysis of sRNA target genes in Mycoplasma hyopneumoniae
Q34418585Glutamate decarboxylase-dependent acid resistance in orally acquired bacteria: function, distribution and biomedical implications of the gadBC operon.
Q42577973Growth phase-dependent expression of drug exporters in Escherichia coli and its contribution to drug tolerance
Q42601067Hfq affects the expression of the LEE pathogenicity island in enterohaemorrhagic Escherichia coli
Q24680586Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli
Q54293188Hfq reduces envelope stress by controlling expression of envelope-localized proteins and protein complexes in enteropathogenic Escherichia coli.
Q42146755Hfq restructures RNA-IN and RNA-OUT and facilitates antisense pairing in the Tn10/IS10 system
Q34473835How to find small non-coding RNAs in bacteria
Q24631254Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris
Q24684824Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
Q30821606Identification of small non-coding RNAs from mitochondria and chloroplasts
Q43808341Improving E. coli growth performance by manipulating small RNA expression.
Q28658016Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia
Q64110598Insights Into Non-coding RNAs as Novel Antimicrobial Drugs
Q28289704Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA
Q41877362IscR controls iron-dependent biofilm formation in Escherichia coli by regulating type I fimbria expression
Q34471767Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
Q34192636Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation
Q41063822Mechanisms of transcription activation exerted by GadX and GadW at the gadA and gadBC gene promoters of the glutamate-based acid resistance system in Escherichia coli
Q42578265N-acetyl-d-glucosamine induces the expression of multidrug exporter genes, mdtEF, via catabolite activation in Escherichia coli
Q34455262NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs
Q89824505On a stake-out: Mycobacterial small RNA identification and regulation
Q33259655Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12.
Q37392501Poly(A)-assisted RNA decay and modulators of RNA stability
Q37333696Polyamines are critical for the induction of the glutamate decarboxylase-dependent acid resistance system in Escherichia coli
Q50079191Predicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatProm
Q34526027Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA.
Q26824684Protein targeting via mRNA in bacteria
Q28469313Quantitative characteristics of gene regulation by small RNA
Q34510098Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction
Q50705038RNAs regulate biology.
Q24684056RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA
Q34538123RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA.
Q28471595Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networks
Q34146403Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3'-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation
Q24603059Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family
Q40162070Regulation of a muralytic enzyme-encoding gene by two non-coding RNAs
Q34740460Regulation of acid resistance by connectors of two-component signal transduction systems in Escherichia coli
Q39455740Regulatory 3' Untranslated Regions of Bacterial mRNAs
Q24595082Regulatory RNAs in bacteria
Q26738280Regulatory RNAs in the Less Studied Streptococcal Species: From Nomenclature to Identification
Q40175884Regulatory small RNAs: the key to coordinating global regulatory circuits
Q33818681Repression of btuB gene transcription in Escherichia coli by the GadX protein
Q24648490Repression of small toxic protein synthesis by the Sib and OhsC small RNAs
Q24606364Reprogramming of anaerobic metabolism by the FnrS small RNA
Q34122762Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation
Q36464974Rho and NusG suppress pervasive antisense transcription in Escherichia coli
Q26766030Role of Small Noncoding RNAs in Bacterial Metabolism
Q35759435Role of mRNA stability in growth phase regulation of gene expression in the group A streptococcus
Q36452790Role of the multidrug resistance regulator MarA in global regulation of the hdeAB acid resistance operon in Escherichia coli
Q37608634Roles of rpoS-activating small RNAs in pathways leading to acid resistance of Escherichia coli.
Q24653055S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum
Q36668567Small RNA regulators and the bacterial response to stress
Q46246769Small RNA repertoires and their intraspecies variation in Aggregatibacter actinomycetemcomitans
Q24641915Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
Q38230079Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli
Q38084831Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella
Q34765262Small non-coding RNAs in Caulobacter crescentus
Q24651398Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli
Q37348337Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects
Q53861487SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli.
Q21131561Staphylococcus aureus RNAIII binds to two distant regions of coa mRNA to arrest translation and promote mRNA degradation
Q41001786Strand specific RNA-sequencing and membrane lipid profiling reveals growth phase-dependent cold stress response mechanisms in Listeria monocytogenes
Q58742109Synthetic negative feedback circuits using engineered small RNAs
Q28081126Target activation by regulatory RNAs in bacteria
Q44821305Target evaluation of the non-coding csRNAs reveals a link of the two-component regulatory system CiaRH to competence control in Streptococcus pneumoniae R6.
Q42291027The 5΄ UTR of the type I toxin ZorO can both inhibit and enhance translation
Q36723203The Emerging Function and Mechanism of ceRNAs in Cancer
Q34215344The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis
Q35174764The PurR regulon in Escherichia coli K-12 MG1655.
Q34189650The RpoS-mediated general stress response in Escherichia coli
Q35833760The Staphylococcus aureus protein-coding gene gdpS modulates sarS expression via mRNA-mRNA interaction
Q34150768The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA.
Q28292941The Vibrio parahaemolyticus small RNA RyhB promotes production of the siderophore vibrioferrin by stabilizing the polycistronic mRNA
Q24606909The ZorO-OrzO type I toxin-antitoxin locus: repression by the OrzO antitoxin
Q41844706The antisense RNA As1_flv4 in the Cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply
Q37995707The bacterial protein Hfq: much more than a mere RNA-binding factor
Q33661903The centrality of RNA for engineering gene expression
Q44674694The excludon: a new concept in bacterial antisense RNA-mediated gene regulation
Q24624170The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript
Q47945575The novel sRNA s015 improves nisin yield by increasing acid tolerance of Lactococcus lactis F44.
Q39519699The small RNA SraG participates in PNPase homeostasis
Q57183085The small RNA, SdsR, acts as a novel type of toxin in Escherichia coli
Q34571457The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism.
Q28277062The target spectrum of SdsR small RNA in Salmonella
Q83929165This paper has been retracted.Retraction notice is found at http://nar.oxfordjournals.org/cgi/content/full/37/15/5234
Q90657919Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica
Q46049554Transcription of an antisense RNA of a gadE mRNA is regulated by GadE, the central activator of the acid resistance system in Escherichia coli
Q24684847Translational control and target recognition by Escherichia coli small RNAs in vivo
Q42753882Translational regulation by an intramolecular stem-loop is required for intermolecular RNA regulation of the par addiction module
Q35746855Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome
Q26796753Use of siRNA molecular beacons to detect and attenuate mycobacterial infection in macrophages
Q37850790cis-antisense RNA, another level of gene regulation in bacteria.
Q50624742miR168 influences phase transition, leaf epinasty, and fruit development via SlAGO1s in tomato.

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