Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress

scientific article published on 28 September 2015

Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/MMI.13230
P932PMC publication ID4996119
P698PubMed publication ID26411266

P50authorCarin K VanderpoolQ92147483
P2093author name stringMaksym Bobrovskyy
P2860cites workTranslation enhancing ACA motifs and their silencing by a bacterial small regulatory RNAQ21563354
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coliQ24536169
Fast and effective prediction of microRNA/target duplexesQ24537313
Hfq is necessary for regulation by the untranslated RNA DsrAQ24548921
GadY, a small-RNA regulator of acid response genes in Escherichia coliQ24563573
Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIIIQ24598365
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genesQ24598644
Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coliQ24605734
Comparative genomics boosts target prediction for bacterial small RNAsQ24621557
Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteriaQ24634652
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple lociQ24645507
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUAQ24649054
Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequenceQ24654070
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regionsQ24655171
Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1Q24655392
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sitesQ24672099
RNAhybrid: microRNA target prediction easy, fast and flexibleQ24680189
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptideQ24683800
The novel transcription factor SgrR coordinates the response to glucose-phosphate stressQ24683850
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coliQ24684800
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Regulation of RpoS by a novel small RNA: the characterization of RprAQ28204998
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component systemQ28244233
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiationQ28252581
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by HfqQ28253347
A small RNA activates CFA synthase by isoform-specific mRNA stabilizationQ42883177
Analysis of carbon metabolism in Escherichia coli strains with an inactive phosphotransferase system by (13)C labeling and NMR spectroscopyQ43992565
Accumulation of glucose 6-phosphate or fructose 6-phosphate is responsible for destabilization of glucose transporter mRNA in Escherichia coliQ44310039
Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coliQ45135642
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Evidence for two functional gal promoters in intact Escherichia coli cellsQ72912310
The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivoQ78016733
Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone HfqQ28263595
Combining evidence using p-values: application to sequence homology searchesQ28265811
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasisQ28288849
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase systemQ28291273
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesisQ28304722
Small RNA binding to 5' mRNA coding region inhibits translational initiationQ28305161
Expression of the glucose transporter gene, ptsG, is regulated at the mRNA degradation step in response to glycolytic flux in Escherichia coliQ28343323
Quantitative characteristics of gene regulation by small RNAQ28469313
Inactivation of metabolic genes causes short- and long-range dys-regulation in Escherichia coli metabolic networkQ28537745
Computational analysis of bacterial RNA-Seq dataQ28686251
An efficient recombination system for chromosome engineering in Escherichia coliQ29615038
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interactionQ29619904
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAsQ29619938
The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promotersQ32141063
Structure/function studies on the bacterial carbohydrate transporters, enzymes II, of the phosphoenolpyruvate-dependent phosphotransferase systemQ33678696
Stabilization of Clostridium perfringens collagenase mRNA by VR-RNA-dependent cleavage in 5' leader sequenceQ34122376
Regulation and Function of Escherichia coli Sugar Efflux Transporter A (SetA) during Glucose-Phosphate StressQ34485023
Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella genomesQ35867666
The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pairQ35882335
The role of phosphoenolpyruvate in the simultaneous uptake of fructose and 2-deoxyglucose by Escherichia coliQ35894973
Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA.Q36342728
HEREDITARY DEFECTS IN GALACTOSE METABOLISM IN ESCHERICHIA COLI MUTANTS, II. GALACTOSE-INDUCED SENSITIVITY.Q36431054
Small RNAs controlling iron metabolismQ36769261
Cell lysis of Bacillus subtilis caused by intracellular accumulation of glucose-1-phosphate.Q36773032
RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA.Q36802626
Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coliQ37253130
Characterization of homologs of the small RNA SgrS reveals diversity in functionQ37384780
L-Arabinose-sensitive, L-ribulose 5-phosphate 4-epimerase-deficient mutants of Escherichia coliQ37422123
Cellular stress created by intermediary metabolite imbalancesQ37428955
Metabolite changes signal genetic regulatory mechanisms for robust cell behaviorQ37519874
Regulation of bacterial metabolism by small RNAs using diverse mechanismsQ38135494
Control of acid resistance in Escherichia coliQ39496012
Properties of Escherichia coli Mutants Deficient in Enzymes of GlycolysisQ39989051
Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA.Q40028342
Consequences of phosphoenolpyruvate:sugar phosphotranferase system and pyruvate kinase isozymes inactivation in central carbon metabolism flux distribution in Escherichia coliQ41763416
Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactionsQ42064272
Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coliQ42634341
P4510describes a project that usesImageJQ1659584
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectglucoseQ37525
glycobiologyQ899224
P304page(s)254-273
P577publication date2015-09-28
P1433published inMolecular MicrobiologyQ6895967
P1476titleDiverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress
P478volume99

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cites work (P2860)
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