Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

scientific article

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode1998PNAS...9512456L
P356DOI10.1073/PNAS.95.21.12456
P3181OpenCitations bibliographic resource ID2072038
P932PMC publication ID22852
P698PubMed publication ID9770507
P5875ResearchGate publication ID13514698

P50authorMarlene BelfortQ6771718
P2093author name stringM E Cusick
R A Lease
P2860cites workBOTANY: An RNA-Based Information Superhighway in PlantsQ59645679
RNA and the epigenetic regulation of X chromosome inactivationQ74557357
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coliQ24562141
A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coliQ24563821
High resolution two-dimensional electrophoresis of proteinsQ24608190
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4Q25938983
The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNAQ28304935
Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmidQ29614535
Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coliQ29615309
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNAQ29617951
Expression of a sodium proton antiporter (NhaA) in Escherichia coli is induced by Na+ and Li+ ionsQ33994569
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.Q34327163
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coliQ34383062
On the statistical significance of nucleic acid similaritiesQ35533172
Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12.Q35633546
Escherichia coli protein analogs StpA and H-NS: regulatory loops, similar and disparate effects on nucleic acid dynamicsQ35846232
New method for generating deletions and gene replacements in Escherichia coliQ36181236
Altered 3'-terminal RNA structure in phage Qbeta adapted to host factor-less Escherichia coliQ36584728
Small RNAs in the prokaryotes: a growing list of diverse rolesQ38186134
Biological regulation by antisense RNA in prokaryotesQ38199963
Domain structure and RNA annealing activity of the Escherichia coli regulatory protein StpA.Q38336063
H-NS regulates OmpF expression through micF antisense RNA in Escherichia coliQ39841844
Na+-induced transcription of nhaA, which encodes an Na+/H+ antiporter in Escherichia coli, is positively regulated by nhaR and affected by hnsQ39843424
The RNA-binding protein HF-I plays a global regulatory role which is largely, but not exclusively, due to its role in expression of the sigmaS subunit of RNA polymerase in Escherichia coliQ39843978
Mutations that increase expression of the rpoS gene and decrease its dependence on hfq function in Salmonella typhimuriumQ39844182
Identification of osmoresponsive genes in Escherichia coli: evidence for participation of potassium and proline transport systems in osmoregulation.Q39964115
Regulation of gene expression by trans-encoded antisense RNAs.Q40401688
The role of the sigma factor sigma S (KatF) in bacterial global regulationQ40572983
Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coliQ41181646
Control of transcription termination in prokaryotesQ41291164
H-NS: a modulator of environmentally regulated gene expression.Q41462412
Tumor suppression by RNA from the 3' untranslated region of alpha-tropomyosinQ41508362
Molecular aspects of the E. coli nucleoid protein, H-NS: a central controller of gene regulatory networksQ41726003
Two dimensional gel electrophoresis and computer analysis of proteins synthesized by clonal cell linesQ41739616
Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coliQ42607498
Escherichia coli protein StpA stimulates self-splicing by promoting RNA assembly in vitro.Q43205795
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
A role for a small stable RNA in modulating the activity of DNA-binding proteinsQ54601441
Autoregulatory expression of the Escherichia coli hns gene encoding a nucleoid protein: H-NS functions as a repressor of its own transcription.Q54664095
Genetic and molecular analysis of RNA splicing in Escherichia coliQ59622212
P4510describes a project that usesImageQuantQ112270642
P433issue21
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)12456-12461
P577publication date1998-10-01
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleRiboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci
P478volume95

Reverse relations

cites work (P2860)
Q31112446A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium
Q28255704A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
Q35089014A defense-offense multi-layered regulatory switch in a pathogenic bacterium
Q43979758A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machinery
Q38293281A game of tag: MAPS catches up on RNA interactomes.
Q38307599A role for the Escherichia coli H-NS-like protein StpA in OmpF porin expression through modulation of micF RNA stability
Q33886315A small RNA controls expression of the chitinase ChiA in Listeria monocytogenes
Q24672099A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
Q24536169A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
Q24652762A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures
Q42706878Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions
Q48194060Alternative pathways for Escherichia coli biofilm formation revealed by sRNA overproduction.
Q41963002An improved method for surface immobilisation of RNA: application to small non-coding RNA-mRNA pairing.
Q34865022Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria.
Q26766027Bacterial Small Regulatory RNAs and Hfq Protein
Q34409384Bacterial small RNA regulators
Q27692531Bacterial small RNA regulators: versatile roles and rapidly evolving variations
Q28253347Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq
Q24791802Beyond the proteome: non-coding regulatory RNAs
Q64885783Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation.
Q39741264Chloride, a new environmental signal molecule involved in gene regulation in a moderately halophilic bacterium, Halobacillus halophilus
Q40211943Classification and strength measurement of stationary-phase promoters by use of a newly developed promoter cloning vector
Q39784092Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
Q37122110Conserved arginines on the rim of Hfq catalyze base pair formation and exchange
Q39997770Constitutive Activation of the Escherichia coli Pho Regulon Upregulates rpoS Translation in an Hfq-Dependent Fashion
Q40130460Controlled Expression of an rpoS Antisense RNA Can Inhibit RpoS Function in Escherichia coli
Q27674771Cooperation of Escherichia coli Hfq hexamers in DsrA binding
Q24612172CrfA, a small noncoding RNA regulator of adaptation to carbon starvation in Caulobacter crescentus
Q28742620CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers
Q35631720Differential protease-mediated turnover of H-NS and StpA revealed by a mutation altering protein stability and stationary-phase survival of Escherichia coli
Q41905494Discovery and characterization of the first non-coding RNA that regulates gene expression, micF RNA: A historical perspective
Q42721560Dissecting RNA chaperone activity
Q37200460Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress
Q33594386Domain organization and oligomerization among H-NS-like nucleoid-associated proteins in bacteria.
Q24645477DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
Q40736188DsrA regulatory RNA represses both hns and rbsD mRNAs through distinct mechanisms in Escherichia coli.
Q24607427Duplex formation between the sRNA DsrA and rpoS mRNA is not sufficient for efficient RpoS synthesis at low temperature
Q99616572Early termination of the Shiga toxin transcript generates a regulatory small RNA
Q37393528Effect of salt and RNA structure on annealing and strand displacement by Hfq.
Q28292183Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs
Q41911664Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD.
Q38358978Genome-wide identification of H-NS-controlled, temperature-regulated genes in Escherichia coli K-12.
Q98566333Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
Q40583832H-NS represses Salmonella enterica serovar Typhimurium dsbA expression during exponential growth
Q42601067Hfq affects the expression of the LEE pathogenicity island in enterohaemorrhagic Escherichia coli
Q28293533Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS
Q40724195Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli.
Q24548921Hfq is necessary for regulation by the untranslated RNA DsrA
Q24680586Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli
Q27677477Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA
Q52623099High-throughput sequencing identification and characterization of potentially adhesion-related small RNAs in Streptococcus mutans.
Q34927627Honing the message: post-transcriptional and post-translational control in attaching and effacing pathogens
Q35620619How do base-pairing small RNAs evolve?
Q34473835How to find small non-coding RNAs in bacteria
Q24540168Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure
Q33994152Identification, cloning, and initial characterization of rot, a locus encoding a regulator of virulence factor expression in Staphylococcus aureus
Q47102732Impact of bacterial sRNAs in stress responses.
Q24557422Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli
Q29618237Initiation of translation in prokaryotes and eukaryotes
Q34556231IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions
Q28289704Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA
Q28211455Interactions of the non-coding RNA DsrA and RpoS mRNA with the 30 S ribosomal subunit
Q50043209Interesting twists on small RNA themes in Pseudomonas aeruginosa
Q42180716Locus of enterocyte effacement: a pathogenicity island involved in the virulence of enteropathogenic and enterohemorragic Escherichia coli subjected to a complex network of gene regulation
Q64928887Mechanisms for Hfq-Independent Activation of rpoS by DsrA, a Small RNA, in Escherichia coli.
Q24629569MicA sRNA links the PhoP regulon to cell envelope stress
Q34811166Modification of the RpoS network with a synthetic small RNA.
Q34395461Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior
Q59000580Multiple Roles for the sRNA GcvB in the Regulation of Slp Levels in Escherichia coli
Q34455262NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs
Q40285241Neisseria meningitidis Uses Sibling Small Regulatory RNAs To Switch from Cataplerotic to Anaplerotic Metabolism
Q34801141Non-coding ribonucleic acids--a class of their own?
Q33801550Noncoding RNA genes
Q22122367Non–coding RNA genes and the modern RNA world
Q42291805Nucleoid and cytoplasmic localization of small RNAs in Escherichia coli.
Q38935351Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding
Q43576806Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.
Q92075560Polynucleotide phosphorylase promotes the stability and function of Hfq-binding sRNAs by degrading target mRNA-derived fragments
Q41548584Polysialic and colanic acids metabolism in Escherichia coli K92 is regulated by RcsA and RcsB.
Q34006620Positive regulation by small RNAs and the role of Hfq
Q38305641Positive regulation of fur gene expression via direct interaction of fur in a pathogenic bacterium, Vibrio vulnificus.
Q27680589Post-Transcriptional Regulator Hfq Binds Catalase HPII: Crystal Structure of the Complex
Q33879783Post-transcriptional control by global regulators of gene expression in bacteria.
Q34510098Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction
Q37309280RNA switches regulate initiation of translation in bacteria.
Q35161552RNA-mediated control of virulence gene expression in bacterial pathogens
Q43409460RNAplex: a fast tool for RNA-RNA interaction search
Q24603023RNApredator: fast accessibility-based prediction of sRNA targets
Q38067568RNase E: at the interface of bacterial RNA processing and decay
Q38324094RNase footprinting of protein binding sites on an mRNA target of small RNAs
Q35088007Rapid binding and release of Hfq from ternary complexes during RNA annealing
Q37137209Reduced Protein Synthesis Fidelity Inhibits Flagellar Biosynthesis and Motility
Q35624262Regulation by RNA.
Q41911369Regulation of the yjjQ-bglJ operon, encoding LuxR-type transcription factors, and the divergent yjjP gene by H-NS and LeuO.
Q34194972Regulatory roles for small RNAs in bacteria
Q30362198Regulatory small RNAs circumvent the conventional quorum sensing pathway in pandemic Vibrio cholerae.
Q40175884Regulatory small RNAs: the key to coordinating global regulatory circuits
Q24606364Reprogramming of anaerobic metabolism by the FnrS small RNA
Q42713382Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA
Q50913509Resistance to environmental stress requires the RNA chaperones CspC and CspE.
Q59126981Revised role for Hfq bacterial regulator on DNA topology
Q28140236Riboregulation by DsrA RNA: trans-actions for global economy
Q28603616Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
Q34985832Role of polynucleotide phosphorylase in sRNA function in Escherichia coli
Q34581112Shewanella oneidensis Hfq promotes exponential phase growth, stationary phase culture density, and cell survival
Q28220384Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase
Q28200768Signal transduction cascade for regulation of RpoS: temperature regulation of DsrA
Q35133724Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs.
Q34164476Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein
Q38230079Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli
Q38084831Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella
Q24651398Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli
Q24674172Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon
Q53861487SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli.
Q42324804Structural flexibility of RNA as molecular basis for Hfq chaperone function
Q34661444Structural model of an mRNA in complex with the bacterial chaperone Hfq.
Q34017427Switching on and off with RNA.
Q36685861Synthetic RNA circuits
Q28081126Target activation by regulatory RNAs in bacteria
Q24544245Target prediction for small, noncoding RNAs in bacteria
Q38296490The C-terminal domain of Escherichia coli Hfq is required for regulation
Q54016367The Escherichia coli histone-like protein HU regulates rpoS translation.
Q37425414The Phosphorolytic Exoribonucleases Polynucleotide Phosphorylase and RNase PH Stabilize sRNAs and Facilitate Regulation of Their mRNA Targets
Q39750811The Small RNA DsrA Influences the Acid Tolerance Response and Virulence of Salmonella enterica Serovar Typhimurium.
Q28292941The Vibrio parahaemolyticus small RNA RyhB promotes production of the siderophore vibrioferrin by stabilizing the polycistronic mRNA
Q34128081The bacterial histone-like protein HU specifically recognizes similar structures in all nucleic acids. DNA, RNA, and their hybrids
Q34835579The bacterial regulatory protein H-NS--a versatile modulator of nucleic acid structures
Q47767055The important conformational plasticity of DsrA sRNA for adapting multiple target regulation
Q40763627The protease Lon and the RNA-binding protein Hfq reduce silencing of the Escherichia coli bgl operon by H-NS.
Q26746091The role of mRNA structure in bacterial translational regulation
Q28288672The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA
Q28058215The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal
Q21131294The small RNA SgrS: roles in metabolism and pathogenesis of enteric bacteria
Q33826038The small RNA chaperone Hfq is required for the virulence of Yersinia pseudotuberculosis
Q28280186The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coli
Q38647767The spectrum of activity of the small RNA DsrA: not so narrow after all.
Q28207541Thioredoxin post-transcriptional regulation by H19 provides a new function to mRNA-like non-coding RNA
Q83929165This paper has been retracted.Retraction notice is found at http://nar.oxfordjournals.org/cgi/content/full/37/15/5234
Q43616437Three-dimensional interaction of Phi29 pRNA dimer probed by chemical modification interference, cryo-AFM, and cross-linking
Q36600386Translation initiation and the fate of bacterial mRNAs
Q28266867Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome binding
Q24684847Translational control and target recognition by Escherichia coli small RNAs in vivo
Q52401284Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism.
Q92732858Trouble is coming: Signaling pathways that regulate general stress responses in bacteria
Q21145881Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation
Q42665602Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region.
Q33879789U-turns and regulatory RNAs
Q28277943ncRNAs and thermoregulation: a view in prokaryotes and eukaryotes
Q37210961sRNA roles in regulating transcriptional regulators: Lrp and SoxS regulation by sRNAs
Q37202654sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes

Search more.