review article | Q7318358 |
scholarly article | Q13442814 |
P50 | author | Udo Bläsi | Q33273810 |
P2093 | author name string | Vladimir R Kaberdin | |
P2860 | cites work | A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli | Q24536169 |
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. | Q24536474 | ||
Emerging features of mRNA decay in bacteria | Q24539798 | ||
Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation | Q24540337 | ||
An mRNA structure that controls gene expression by binding FMN | Q24541465 | ||
Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction | Q24546344 | ||
A mRNA-based thermosensor controls expression of rhizobial heat shock genes | Q24548824 | ||
A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria | Q24555765 | ||
Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression | Q24556609 | ||
Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli | Q24557422 | ||
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli | Q24563596 | ||
Translational induction of heat shock transcription factor sigma32: evidence for a built-in RNA thermosensor | Q24606736 | ||
FinO is an RNA chaperone that facilitates sense-antisense RNA interactions | Q24633970 | ||
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription | Q24645477 | ||
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci | Q24645507 | ||
A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures | Q24652762 | ||
Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon | Q24674172 | ||
The riboswitch-mediated control of sulfur metabolism in bacteria | Q24678031 | ||
Chloramphenicol-induced stabilization of cat messenger RNA in Bacillus subtilis | Q48197675 | ||
Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover | Q48549450 | ||
The relationship between translational control and mRNA degradation for the Escherichia coli threonyl-tRNA synthetase gene | Q49203292 | ||
Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA. | Q50146292 | ||
Co-existing structures of an mRNA stability determinant. The 5' region of the Escherichia coli and Serratia marcescens ompA mRNA. | Q52400957 | ||
STAB-SD: a Shine-Dalgarno sequence in the 5' untranslated region is a determinant of mRNA stability. | Q52549133 | ||
What constitutes the signal for the initiation of protein synthesis on Escherichia coli mRNAs? | Q52867105 | ||
Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. | Q53647064 | ||
The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. | Q54512187 | ||
Temperature-dependent stability and translation of Escherichia coli ompA mRNA. | Q54515311 | ||
Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA. | Q54538982 | ||
Promoter-independent cold-shock induction of cspA and its derepression at 37 degrees C by mRNA stabilization. | Q54574151 | ||
Structural and functional analyses of the FinP antisense RNA regulatory system of the F conjugative plasmid. | Q54650931 | ||
The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo | Q54695436 | ||
Site-specific endonucleolytic cleavages and the regulation of stability of E. coli ompA mRNA. | Q54751287 | ||
Regulation of the promoters and transcripts of rpoH, the Escherichia coli heat shock regulatory gene. | Q54763507 | ||
TheEscherichia coliRNA degradosome: structure, function and relationship to other ribonucleolytic multienyzme complexes | Q57486494 | ||
Translational Operator of mRNA on the Ribosome: How Repressor Proteins Exclude Ribosome Binding | Q57980827 | ||
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli | Q24684800 | ||
Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E. | Q24796978 | ||
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB. | Q24804862 | ||
Riboregulation by DsrA RNA: trans-actions for global economy | Q28140236 | ||
Mechanism of killer gene activation. Antisense RNA-dependent RNase III cleavage ensures rapid turn-over of the stable hok, srnB and pndA effector messenger RNAs | Q28187970 | ||
MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors | Q28198553 | ||
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes | Q28201771 | ||
Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm | Q28204689 | ||
Regulation of RpoS by a novel small RNA: the characterization of RprA | Q28204998 | ||
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression | Q28212624 | ||
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs | Q28216159 | ||
Adenine riboswitches and gene activation by disruption of a transcription terminator | Q28238433 | ||
Micros for microbes: non-coding regulatory RNAs in bacteria | Q28252632 | ||
Antisense RNA-regulated programmed cell death | Q28259967 | ||
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae | Q28270975 | ||
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system | Q28291273 | ||
RNA thermometers | Q28293883 | ||
Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E | Q28295080 | ||
Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa | Q28492730 | ||
Sensing Small Molecules by Nascent RNA | Q29039420 | ||
Ribonuclease III: new sense from nuisance | Q29041137 | ||
Regulation of bacterial gene expression by riboswitches | Q29617849 | ||
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs | Q29619938 | ||
The bacterial Sm-like protein Hfq: a key player in RNA transactions | Q29620062 | ||
mRNA degradation. A tale of poly(A) and multiprotein machines. | Q33543980 | ||
Evidence in vivo that the DEAD-box RNA helicase RhlB facilitates the degradation of ribosome-free mRNA by RNase E | Q33784479 | ||
Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis | Q33789986 | ||
Retroregulation of the synthesis of ribosomal proteins L14 and L24 by feedback repressor S8 in Escherichia coli | Q33830880 | ||
Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA. | Q33947279 | ||
The poly(A) tail of mRNAs: bodyguard in eukaryotes, scavenger in bacteria | Q33962914 | ||
The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide | Q33984064 | ||
Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator | Q34107548 | ||
Antisense RNAs in bacteria and their genetic elements | Q34121867 | ||
Preferential translation of cold-shock mRNAs during cold adaptation | Q41842082 | ||
Translational autocontrol of the Escherichia coli hfq RNA chaperone gene | Q42140013 | ||
Analysis of the in vivo decay of the Escherichia coli dicistronic pyrF-orfF transcript: evidence for multiple degradation pathways | Q42656645 | ||
Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli | Q43622963 | ||
Interaction of the RNA chaperone Hfq with mRNAs: direct and indirect roles of Hfq in iron metabolism of Escherichia coli | Q44655567 | ||
RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation | Q46556739 | ||
Enhancement of translation initiation by A/T-rich sequences downstream of the initiation codon in Escherichia coli | Q47577551 | ||
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator | Q48047346 | ||
RNase III-dependent hydrolysis of lambda cII-O gene mRNA mediated by lambda OOP antisense RNA. | Q34177654 | ||
Transcriptional and post-transcriptional control of cold-shock genes | Q34219818 | ||
mRNA decay in Escherichia coli comes of age. | Q34317343 | ||
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. | Q34327163 | ||
Bacterial small RNA regulators | Q34409384 | ||
Riboswitches as versatile gene control elements | Q34421740 | ||
Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control | Q34534609 | ||
Shutdown decay of mRNA. | Q34542254 | ||
Induced mRNA stability in Bacillus subtilis | Q34589447 | ||
Effect of premature termination of translation on mRNA stability depends on the site of ribosome release | Q34639006 | ||
Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA. | Q34866390 | ||
Bacterial translational control at atomic resolution | Q35076949 | ||
Initiation factors in the early events of mRNA translation in bacteria | Q35133729 | ||
Degradation of targeted mRNAs in Escherichia coli: regulation by a small antisense RNA. | Q35549054 | ||
A polypurine sequence that acts as a 5' mRNA stabilizer in Bacillus subtilis | Q35588185 | ||
Genetic definition of the translational operator of the threonine-tRNA ligase gene in Escherichia coli | Q35611381 | ||
Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12. | Q35633546 | ||
The cleavage specificity of RNase III. | Q35870756 | ||
Effect of translational signals on mRNA decay in Bacillus subtilis | Q35921943 | ||
Lost in translation: the influence of ribosomes on bacterial mRNA decay | Q36303663 | ||
Triple post-transcriptional control | Q36627703 | ||
Global analysis of Escherichia coli RNA degradosome function using DNA microarrays | Q36852086 | ||
A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs | Q37087763 | ||
Initiation of mRNA translation in prokaryotes | Q37946610 | ||
Biological regulation by antisense RNA in prokaryotes | Q38199963 | ||
Ribonuclease E is a 5'-end-dependent endonuclease | Q38332068 | ||
Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1. | Q38337095 | ||
Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates | Q38350987 | ||
Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay | Q38351633 | ||
The phylogenetic distribution of bacterial ribonucleases. | Q39696551 | ||
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs | Q39784092 | ||
Identification of endonucleolytic cleavage sites involved in decay of Escherichia coli trxA mRNA | Q39884591 | ||
An efficient Shine-Dalgarno sequence but not translation is necessary for lacZ mRNA stability in Escherichia coli | Q39931015 | ||
Temperature sensing in Yersinia pestis: translation of the LcrF activator protein is thermally regulated | Q39938127 | ||
Lack of a 5' non-coding region in Tn1721encodedtetRmRNA is associated with a low efficiency of translation and a short half-life inEscherichia coil | Q40506498 | ||
RNA chaperone activity of the Sm-like Hfq protein | Q40666181 | ||
AU-rich sequences within 5' untranslated leaders enhance translation and stabilize mRNA in Escherichia coli. | Q40942881 | ||
P433 | issue | 6 | |
P304 | page(s) | 967-979 | |
P577 | publication date | 2006-09-21 | |
P1433 | published in | FEMS Microbiology Reviews | Q15762226 |
P1476 | title | Translation initiation and the fate of bacterial mRNAs | |
P478 | volume | 30 |
Q41634870 | 3' Untranslated region-dependent degradation of the aceA mRNA, encoding the glyoxylate cycle enzyme isocitrate lyase, by RNase E/G in Corynebacterium glutamicum |
Q30678474 | A genome-scale integration and analysis of Lactococcus lactis translation data |
Q39758162 | A new custom microarray for sRNA profiling in Escherichia coli. |
Q54299148 | A secondary structure in the 5' untranslated region of adhE mRNA required for RNase G-dependent regulation. |
Q49309498 | A set of synthetic versatile genetic control elements for the efficient expression of genes in Actinobacteria |
Q36219862 | Acidic Residues in the Hfq Chaperone Increase the Selectivity of sRNA Binding and Annealing |
Q92351356 | Activator of one protease transforms into inhibitor of another in response to nutritional signals |
Q47612981 | An A/U-Rich Enhancer Region Is Required for High-Level Protein Secretion through the HlyA Type I Secretion System. |
Q42142374 | Antisense regulation by transposon-derived RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus |
Q42753757 | Arginine Patch Predicts the RNA Annealing Activity of Hfq from Gram-Negative and Gram-Positive Bacteria |
Q43173275 | Autogenous regulation of Escherichia coli polynucleotide phosphorylase expression revisited |
Q37735901 | Carbon catabolite repression in Pseudomonas : optimizing metabolic versatility and interactions with the environment. |
Q34388505 | Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling |
Q36904243 | Compensating the Fitness Costs of Synonymous Mutations |
Q34767703 | Composition and conservation of the mRNA-degrading machinery in bacteria |
Q37122110 | Conserved arginines on the rim of Hfq catalyze base pair formation and exchange |
Q90148693 | Control of Type III Secretion System Effector/Chaperone Ratio Fosters Pathogen Adaptation to Host-Adherent Lifestyle |
Q39175035 | Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor. |
Q93037439 | Defining the transcription landscape of the Gram-negative marine bacterium Vibrio harveyi |
Q42852143 | Design and optimization of short DNA sequences that can be used as 5' fusion partners for high-level expression of heterologous genes in Escherichia coli |
Q21090049 | Design parameters to control synthetic gene expression in Escherichia coli |
Q33851728 | Differential expression of type III effector BteA protein due to IS481 insertion in Bordetella pertussis |
Q37606927 | Dual role of transcription and transcript stability in the regulation of gene expression in Escherichia coli cells cultured on glucose at different growth rates. |
Q37545363 | Engineering ligand-responsive gene-control elements: lessons learned from natural riboswitches |
Q54376808 | Escherichia coli glycogen genes are organized in a single glgBXCAP transcriptional unit possessing an alternative suboperonic promoter within glgC that directs glgAP expression. |
Q42069373 | Fluorescence reporters for Hfq oligomerization and RNA annealing |
Q58732064 | Functional Genetic Elements for Controlling Gene Expression in Cupriavidus necator H16 |
Q35575315 | Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates. |
Q33878203 | Genome-wide mRNA processing in methanogenic archaea reveals post-transcriptional regulation of ribosomal protein synthesis. |
Q37652276 | Genome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1. |
Q42582045 | Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing |
Q36280714 | Hfq proximity and orientation controls RNA annealing |
Q54342974 | High growth rate downregulates fumA mRNA transcription but is dramatically compensated by its mRNA stability in Escherichia coli. |
Q37392525 | Killer and protective ribosomes |
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Q54390428 | Mutation of GOGAT prevents pea bacteroid formation and N2 fixation by globally downregulating transport of organic nitrogen sources. |
Q34805431 | Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR. |
Q34463415 | Novel targets of the CbrAB/Crc carbon catabolite control system revealed by transcript abundance in Pseudomonas aeruginosa |
Q58115498 | Optimization of carbon and energy utilization through differential translational efficiency |
Q42254765 | Optimization of gene expression through divergent mutational paths. |
Q42075370 | Polynucleotide phosphorylase hinders mRNA degradation upon ribosomal protein S1 overexpression in Escherichia coli |
Q38016604 | Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems. |
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Q33545436 | Promoter knock-in: a novel rational method for the fine tuning of genes |
Q33705174 | Proteomic alterations explain phenotypic changes in Sinorhizobium meliloti lacking the RNA chaperone Hfq. |
Q41780483 | Quantitative transcript analysis of the inducible expression system pSIP: comparison of the overexpression of Lactobacillus spp. β-galactosidases in Lactobacillus plantarum |
Q58611902 | RNA polyadenylation and its consequences in prokaryotes |
Q28299505 | RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation |
Q52892141 | RNase III mediated cleavage of the coding region of mraZ mRNA is required for efficient cell division in Corynebacterium glutamicum. |
Q35088007 | Rapid binding and release of Hfq from ternary complexes during RNA annealing |
Q21144870 | Regulation of Hfq by the RNA CrcZ in Pseudomonas aeruginosa carbon catabolite repression |
Q42714248 | Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway |
Q42713382 | Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA |
Q36221990 | Ribosomal protein S1 unwinds double-stranded RNA in multiple steps |
Q52313848 | Ribosome maturation by the endoribonuclease YbeY stabilises a type III secretion system transcript required for virulence of enterohemorrhagic Escherichia coli. |
Q37264135 | Role for cis-acting RNA sequences in the temperature-dependent expression of the multiadhesive lig proteins in Leptospira interrogans |
Q35224326 | S1 ribosomal protein and the interplay between translation and mRNA decay |
Q41988721 | Silencing of Essential Genes within a Highly Coordinated Operon in Escherichia coli. |
Q34254544 | Small regulatory RNAs in Pseudomonas aeruginosa |
Q35040942 | Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. |
Q39662098 | Temperature-sensitive mutants of RNase E in Salmonella enterica |
Q43266122 | The Corynebacterium glutamicum NCgl2281 gene encoding an RNase E/G family endoribonuclease can complement the Escherichia coli rng::cat mutation but not the rne-1 mutation |
Q28292941 | The Vibrio parahaemolyticus small RNA RyhB promotes production of the siderophore vibrioferrin by stabilizing the polycistronic mRNA |
Q38102646 | The contribution of proteomics to the unveiling of the survival strategies used by Pseudomonas putida in changing and hostile environments |
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Q33310587 | The translation of recombinant proteins in E. coli can be improved by in silico generating and screening random libraries of a -70/+96 mRNA region with respect to the translation initiation codon. |
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Q28264495 | Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5'-leader |
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