Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

scientific article

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1111/J.1365-2958.2011.07589.X
P698PubMed publication ID21320185
P5875ResearchGate publication ID49835208

P50authorWolfgang René HessQ1583375
Lars Ingo Ole LeichertQ51537804
Björn VossQ56999237
P2093author name stringFranz Narberhaus
Ina Wilms
P2860cites workA Conserved Mechanism of GABA Binding and Antagonism Is Revealed by Structure-Function Analysis of the Periplasmic Binding Protein Atu2422 in Agrobacterium tumefaciensQ27663447
Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDaQ27861105
The Listeria transcriptional landscape from saprophytism to virulence.Q28131414
6S RNA regulates E. coli RNA polymerase activityQ28140651
The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coliQ28145321
A novel sRNA component of the carbon storage regulatory system of Escherichia coliQ28190971
Regulation and mode of action of the second small RNA activator of RpoS translation, RprAQ28212671
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNAQ28238977
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by HfqQ28253347
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio choleraeQ28270975
The primary transcriptome of the major human pathogen Helicobacter pyloriQ28273545
Mechanism of RNA silencing by Hfq-binding small RNAsQ28294833
Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella entericaQ28296796
A small bacterial RNA regulates a putative ABC transporterQ28299894
Small RNA binding to 5' mRNA coding region inhibits translational initiationQ28305161
The genome of the natural genetic engineer Agrobacterium tumefaciens C58Q28492352
Biocomputational prediction of non-coding RNAs in model cyanobacteriaQ33421117
Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling arrayQ33525404
Differential proteome analysis of human gliomas stratified for loss of heterozygosity on chromosomal arms 1p and 19q.Q33532354
The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfaQ33537458
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.Q33564641
A fine control of quorum-sensing communication in Agrobacterium tumefaciensQ33930992
RNA thermometers are common in alpha- and gamma-proteobacteriaQ33991965
The transfer of DNA from agrobacterium tumefaciens into plants: a feast of fundamental insightsQ33992852
Target identification of small noncoding RNAs in bacteriaQ34004747
Bacterial ABC transporters of amino acidsQ34290776
ATP-binding cassette transporters in bacteriaQ34326023
Bacterial small RNA regulatorsQ34409384
Extension inhibition analysis of translation initiation complexesQ34412702
Indoleacetic acid, a product of transferred DNA, inhibits vir gene expression and growth of Agrobacterium tumefaciens C58Q34574908
GABA controls the level of quorum-sensing signal in Agrobacterium tumefaciens.Q34624603
Different regulation and roles of lactonases AiiB and AttM in Agrobacterium tumefaciens C58.Q34974389
Identification of cyanobacterial non-coding RNAs by comparative genome analysisQ21092872
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium melilotiQ21093388
Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translationQ21145881
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021Q21263198
Mfold web server for nucleic acid folding and hybridization predictionQ24498105
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome bindingQ24533360
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.Q24536474
Fast and effective prediction of microRNA/target duplexesQ24537313
Target prediction for small, noncoding RNAs in bacteriaQ24544245
Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expressionQ24556609
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coliQ24563596
Regulatory RNAs in bacteriaQ24595082
Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulenceQ24641915
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcriptionQ24645477
Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple lociQ24645507
The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulatorQ24653385
Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomicsQ24653390
The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coliQ24656262
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sitesQ24672099
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanismQ24681092
Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targetsQ24684824
Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011Q27496618
Experimental approaches for the discovery and characterization of regulatory small RNA.Q35003330
Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroidesQ35012388
Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi.Q35589172
The plant signal salicylic acid shuts down expression of the vir regulon and activates quormone-quenching genes in AgrobacteriumQ35867643
Bacterial RNase P: a new view of an ancient enzymeQ36596477
Cell-cell communication in the plant pathogen Agrobacterium tumefaciensQ36732525
Hfq structure, function and ligand bindingQ36774884
Role of the Sinorhizobium meliloti global regulator Hfq in gene regulation and symbiosisQ36787504
sRNATarget: a web server for prediction of bacterial sRNA targets.Q37288745
Proline antagonizes GABA-induced quenching of quorum-sensing in Agrobacterium tumefaciensQ37321144
Computational prediction of sRNAs and their targets in bacteria.Q37671500
Rhizobium leguminosarum has a second general amino acid permease with unusually broad substrate specificity and high similarity to branched-chain amino acid transporters (Bra/LIV) of the ABC family.Q39679783
Cloning, purification, crystallization and preliminary X-ray analysis of a bacterial GABA receptor with a Venus flytrap foldQ41339389
A bacterial RNA that functions as both a tRNA and an mRNA.Q41710118
Pathway of gamma-aminobutyrate metabolism in Rhizobium leguminosarum 3841 and its role in symbiosis.Q43163216
Comparison of protein enrichment strategies for proteome analysis of plasmaQ43176129
The BlcC (AttM) lactonase of Agrobacterium tumefaciens does not quench the quorum-sensing system that regulates Ti plasmid conjugative transferQ43192635
The assimilation of gamma-butyrolactone in Agrobacterium tumefaciens C58 interferes with the accumulation of the N-acyl-homoserine lactone signal.Q45071904
Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case.Q45958746
Comparative transcriptome analysis of Agrobacterium tumefaciens in response to plant signal salicylic acid, indole-3-acetic acid and gamma-amino butyric acid reveals signalling cross-talk and Agrobacterium--plant co-evolutionQ46451545
Salicylic acid and systemic acquired resistance play a role in attenuating crown gall disease caused by Agrobacterium tumefaciens.Q46835213
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Regulatory RNAs in prokaryotes: here, there and everywhere.Q52422301
Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti.Q54397715
A small antisense RNA downregulates expression of an essential replicase protein of an Agrobacterium tumefaciens Ti plasmid.Q54485663
Two different mechanisms are involved in the heat-shock regulation of chaperonin gene expression in Bradyrhizobium japonicum.Q54594299
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectAgrobacterium tumefaciensQ131472
P304page(s)492-506
P577publication date2011-03-03
P1433published inMolecular MicrobiologyQ6895967
P1476titleSmall RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein
P478volume80

Reverse relations

cites work (P2860)
Q33770622A 6-Nucleotide Regulatory Motif within the AbcR Small RNAs of Brucella abortus Mediates Host-Pathogen Interactions
Q41108078A LysR-family transcriptional regulator required for virulence in Brucella abortus is highly conserved among the α-proteobacteria
Q59137636A Small Regulatory RNA Controls Cell Wall Biosynthesis and Antibiotic Resistance
Q99365552A central role for the transcriptional regulator VtlR in small RNA-mediated gene regulation in Agrobacterium tumefaciens
Q38841045A conserved α-proteobacterial small RNA contributes to osmoadaptation and symbiotic efficiency of rhizobia on legume roots.
Q28535217A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens
Q28730090A survey of sRNA families in α-proteobacteria
Q38234958Agrobacterium tumefaciens responses to plant-derived signaling molecules
Q45071137An account of evolutionary specialization: the AbcR small RNAs in the Rhizobiales
Q40818234Conditional Proteolysis of the Membrane Protein YfgM by the FtsH Protease Depends on a Novel N-terminal Degron.
Q41962413Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales
Q42115225Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens
Q28657424Deep sequencing-based identification of small regulatory RNAs in Synechocystis sp. PCC 6803
Q34510504Ecological dynamics and complex interactions of Agrobacterium megaplasmids
Q28241086Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function
Q35160857Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.
Q36276430Hfq influences multiple transport systems and virulence in the plant pathogen Agrobacterium tumefaciens.
Q35620619How do base-pairing small RNAs evolve?
Q34280799Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308.
Q36849699In planta fitness-cost of the Atu4232-regulon encoding for a selective GABA-binding sensor in Agrobacterium.
Q34837547Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti.
Q55283323Origin, Evolution, and Loss of Bacterial Small RNAs.
Q44958351Pepper arginine decarboxylase is required for polyamine and γ-aminobutyric acid signaling in cell death and defense response
Q43576806Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.
Q24490074Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens
Q28714377Quantitative proteomic analysis of the Hfq-regulon in Sinorhizobium meliloti 2011
Q52320401Quorum Sensing and Quorum Quenching in Agrobacterium: A "Go/No Go System"?
Q38598251Quorum quenching: role in nature and applied developments
Q54253141RETRACTED: A small non-coding RNA AbcR2 regulate gntR transcription factor that modulate the intracellular survival of Brucella melitensis.
Q35243430RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shock.
Q90270007Riboregulation in Nitrogen-Fixing Endosymbiotic Bacteria
Q26864663Riboregulation in plant-associated α-proteobacteria
Q21131292Sibling rivalry: related bacterial small RNAs and their redundant and non-redundant roles
Q33554177Sinorhizobium meliloti YbeY is an endoribonuclease with unprecedented catalytic features, acting as silencing enzyme in riboregulation
Q21131371Small RNA sX13: a multifaceted regulator of virulence in the plant pathogen Xanthomonas
Q96954783Small RNAs as Fundamental Players in the Transference of Information During Bacterial Infectious Diseases
Q57826063Small RNAs of theBradyrhizobium/Rhodopseudomonaslineage and their analysis
Q36634938Succinic Semialdehyde Promotes Prosurvival Capability of Agrobacterium tumefaciens
Q64019873The RNase YbeY Is Vital for Ribosome Maturation, Stress Resistance, and Virulence of the Natural Genetic Engineer Agrobacterium tumefaciens
Q28651512The evolutionary fate of the horizontally transferred agrobacterial mikimopine synthase gene in the genera Nicotiana and Linaria
Q42665602Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region.

Search more.