| review article | Q7318358 |
| scholarly article | Q13442814 |
| P2093 | author name string | Gisela Storz | |
| Lauren S Waters | |||
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| Small RNA gene identification and mRNA target predictions in bacteria | Q37313710 | ||
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| Regulation of gene expression by small non-coding RNAs: a quantitative view | Q41585774 | ||
| Characterization of the role of ribonucleases in Salmonella small RNA decay | Q42059829 | ||
| Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts | Q42779862 | ||
| GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/GadW-specific binding sites | Q45745812 | ||
| Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case. | Q45958746 | ||
| The RNase E of Escherichia coli is a membrane-binding protein | Q46314710 | ||
| A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator | Q48047346 | ||
| Efficient degradation and expression prioritization with small RNAs. | Q54433113 | ||
| Synthesis-mediated release of a small RNA inhibitor of RNA polymerase. | Q54450635 | ||
| The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. | Q54496668 | ||
| Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq. | Q54522553 | ||
| Isolation of small RNA-binding proteins from E. coli: evidence for frequent interaction of RNAs with RNA polymerase | Q57196739 | ||
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| Effect of RyhB small RNA on global iron use in Escherichia coli | Q28275120 | ||
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| Riboswitches as antibacterial drug targets | Q34589699 | ||
| Identification of small RNAs in diverse bacterial species | Q34611996 | ||
| Regulatory mechanisms employed by cis-encoded antisense RNAs | Q34612437 | ||
| Identification of bacterial small non-coding RNAs: experimental approaches | Q34635147 | ||
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| Small non-coding RNAs in Caulobacter crescentus | Q34765262 | ||
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| Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA | Q35320065 | ||
| Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi. | Q35589172 | ||
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| A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode. | Q36367237 | ||
| RNAs involved in copy-number control and incompatibility of plasmid R1 | Q36373184 | ||
| The role of RNAs in the regulation of virulence-gene expression. | Q36418318 | ||
| RNA synthetic biology | Q36470934 | ||
| Bacterial RNase P: a new view of an ancient enzyme | Q36596477 | ||
| From ribosome to riboswitch: control of gene expression in bacteria by RNA structural rearrangements | Q36648410 | ||
| The tmRNA system for translational surveillance and ribosome rescue. | Q36732561 | ||
| TargetRNA: a tool for predicting targets of small RNA action in bacteria | Q36749437 | ||
| Small RNAs controlling outer membrane porins | Q36763357 | ||
| Small noncoding RNAs controlling pathogenesis | Q36769256 | ||
| Small RNAs controlling iron metabolism | Q36769261 | ||
| The role of small RNAs in quorum sensing | Q36771067 | ||
| Hfq structure, function and ligand binding | Q36774884 | ||
| RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA. | Q36802626 | ||
| A quantitative comparison of sRNA-based and protein-based gene regulation | Q36973020 | ||
| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | bacteria | Q10876 |
| P304 | page(s) | 615-28 | |
| P577 | publication date | 2009-02-20 | |
| P1433 | published in | Cell | Q655814 |
| P1476 | title | Regulatory RNAs in bacteria | |
| P478 | volume | 136 |
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| Q34685258 | A global transcriptional switch between the attack and growth forms of Bdellovibrio bacteriovorus |
| Q35040974 | A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq. |
| Q35775149 | A kissing loop is important for btuB riboswitch ligand sensing and regulatory control |
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| Q36022309 | Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation |
| Q36071870 | Constitutive expression of the sRNA GadY decreases acetate production and improves E. coli growth |
| Q48184769 | Contribution of bacterial promoter elements to transcription start site detection accuracy. |
| Q21131396 | Control of virulence by small RNAs in Streptococcus pneumoniae |
| Q35035108 | Convergent transcription confers a bistable switch in Enterococcus faecalis conjugation. |
| Q33963878 | Convergent transcription in the butyrolactone regulon in Streptomyces coelicolor confers a bistable genetic switch for antibiotic biosynthesis |
| Q91594621 | Coordinate regulation of the expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin in Escherichia coli |
| Q51095298 | Corynebacterium glutamicum for Sustainable Bioproduction: From Metabolic Physiology to Systems Metabolic Engineering. |
| Q24612172 | CrfA, a small noncoding RNA regulator of adaptation to carbon starvation in Caulobacter crescentus |
| Q34194742 | Crystal structure of clustered regularly interspaced short palindromic repeats (CRISPR)-associated Csn2 protein revealed Ca2+-dependent double-stranded DNA binding activity. |
| Q46119527 | CsrB, a noncoding regulatory RNA, is required for BarA-dependent expression of biocontrol traits in Rahnella aquatilis HX2. |
| Q38120750 | Current challenges in bacterial transcriptomics |
| Q38087172 | Cycling of RNAs on Hfq. |
| Q39799457 | DNA-damaging agents induce the RecA-independent homologous recombination functions of integrating conjugative elements of the SXT/R391 family |
| Q33564641 | Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. |
| Q34001909 | Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli |
| Q42115225 | Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens |
| Q21134930 | Deep sequencing whole transcriptome exploration of the σE regulon in Neisseria meningitidis |
| Q33633681 | Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome |
| Q39175035 | Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor. |
| Q28657424 | Deep sequencing-based identification of small regulatory RNAs in Synechocystis sp. PCC 6803 |
| Q42014958 | Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes |
| Q38290074 | Definition and identification of small RNA sponges: Focus on miRNA sequestration |
| Q36480175 | Deletion of the Small RNA Chaperone Protein Hfq down Regulates Genes Related to Virulence and Confers Protection against Wild-Type Brucella Challenge in Mice |
| Q33539990 | Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery |
| Q33882840 | Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element. |
| Q64987846 | Determination of an Interaction Network between an Extracellular Bacterial Pathogen and the Human Host. |
| Q34371534 | Determination of sRNA expressions by RNA-seq in Yersinia pestis grown in vitro and during infection |
| Q92720465 | Development and engineering of artificial RNAs |
| Q24490182 | Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation |
| Q89522028 | Differential evolution in 3'UTRs leads to specific gene expression in Staphylococcus |
| Q28659211 | Differential expression of small RNAs from Burkholderia thailandensis in response to varying environmental and stress conditions |
| Q34504665 | Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli |
| Q41549392 | Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E. |
| Q39614417 | Direct comparison of small RNA and transcription factor signaling |
| Q24633403 | Direct evidence for control of the pheromone-inducible prgQ operon of Enterococcus faecalis plasmid pCF10 by a countertranscript-driven attenuation mechanism |
| Q24633067 | Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution |
| Q34508525 | Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum |
| Q28654461 | Discovery and validation of novel and distinct RNA regulators for ribosomal protein S15 in diverse bacterial phyla |
| Q28648443 | Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures |
| Q35667449 | Discriminating tastes: physiological contributions of the Hfq-binding small RNA Spot 42 to catabolite repression |
| Q55041276 | Distribution of Major Pilin Subunit Genes Among Atypical Enteropathogenic Escherichia coli and Influence of Growth Media on Expression of the ecp Operon. |
| Q46814709 | Diversity of small RNAs expressed in Pseudomonas species. |
| Q34297176 | Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein |
| Q39942454 | Dual nuclease activity of a Cas2 protein in CRISPR-Cas subtype I-B of Leptospira interrogans |
| Q57165385 | Dual-Function RNAs |
| Q36483634 | Dual-acting riboswitch control of translation initiation and mRNA decay |
| Q34711944 | Dynalign II: common secondary structure prediction for RNA homologs with domain insertions |
| Q35088012 | Dynamic competition of DsrA and rpoS fragments for the proximal binding site of Hfq as a means for efficient annealing |
| Q39396236 | Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells |
| Q33878120 | Dynamics of sequestration-based gene regulatory cascades |
| Q34769240 | E. coli DNA associated with isolated Hfq interacts with Hfq's distal surface and C-terminal domain |
| Q41673140 | Early Transcriptome Response of Lactococcus lactis to Environmental Stresses Reveals Differentially Expressed Small Regulatory RNAs and tRNAs |
| Q42500926 | Effect of Crc and Hfq proteins on the transcription, processing, and stability of the Pseudomonas putida CrcZ sRNA. |
| Q47882746 | Effect of RNase E deficiency on translocon protein synthesis in an RNase E-inducible strain of enterohemorrhagic Escherichia coli O157:H7. |
| Q34229939 | Effects of the cryptochrome CryB from Rhodobacter sphaeroides on global gene expression in the dark or blue light or in the presence of singlet oxygen |
| Q34018930 | Ehrlichia chaffeensis transcriptome in mammalian and arthropod hosts reveals differential gene expression and post transcriptional regulation |
| Q35069174 | Emerging functions for the Staphylococcus aureus RNome |
| Q40469381 | Enhancement of the pathogenicity of Staphylococcus aureus strain Newman by a small noncoding RNA SprX1. |
| Q34580779 | Envelope stress is a trigger of CRISPR RNA-mediated DNA silencing in Escherichia coli |
| Q39749470 | Epidemiology and virulence insights from MRSA and MSSA genome analysis |
| Q92904656 | EsR240, a non-coding sRNA, is required for the resistance of Edwardsiella tarda to stresses in macrophages and for virulence |
| Q34274050 | Esre: a novel essential non-coding RNA in Escherichia coli |
| Q28297881 | Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA |
| Q54363549 | Evidences of autoregulation of hfq expression in Sinorhizobium meliloti strain 2011. |
| Q37454911 | Evolution by leaps: gene duplication in bacteria |
| Q28741397 | Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli |
| Q41902514 | Evolution of transcriptional regulatory circuits in bacteria |
| Q38845010 | Evolutionary Origin and Conserved Structural Building Blocks of Riboswitches and Ribosomal RNAs: Riboswitches as Probable Target Sites for Aminoglycosides Interaction. |
| Q28727263 | Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life |
| Q35867666 | Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella genomes |
| Q42064272 | Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions |
| Q38113930 | Exceptional stories of microRNAs |
| Q27024583 | Experimental approaches to identify small RNAs and their diverse roles in bacteria--what we have learnt in one decade of MicA research |
| Q24622806 | Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism |
| Q43932569 | Experimental identification of small non-coding regulatory RNAs in the opportunistic human pathogen Burkholderia cenocepacia J2315. |
| Q33946185 | Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes |
| Q43181671 | Exploration of the role of the non-coding RNA SbrE in L. monocytogenes stress response |
| Q36740865 | Exploring sRNA-mediated gene silencing mechanisms using artificial small RNAs derived from a natural RNA scaffold in Escherichia coli. |
| Q36043799 | Exploring the Dynamics and Mutational Landscape of Riboregulation with a Minimal Synthetic Circuit in Living Cells |
| Q90753167 | Expression of small RNAs of Bordetella pertussis colonizing murine tracheas |
| Q21266707 | Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida |
| Q30587563 | Extracting intracellular diffusive states and transition rates from single-molecule tracking data |
| Q58553848 | FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol |
| Q34730389 | Fitness costs of synonymous mutations in the rpsT gene can be compensated by restoring mRNA base pairing. |
| Q90213083 | Fitting Pieces into the Puzzle of Pseudomonas aeruginosa Type III Secretion System Gene Expression |
| Q90280750 | Former Orphan Riboswitches Reveal Unexplored Areas of Bacterial Metabolism, Signaling and Gene Control Processes |
| Q29541839 | From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome |
| Q45340768 | Functional Characterization of Acinetobacter baumannii Lacking the RNA Chaperone Hfq. |
| Q28584594 | Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages |
| Q60213473 | Functional annotation and distribution overview of RNA families in 27 Streptococcus agalactiae genomes |
| Q35217099 | Functional characterization of bacterial sRNAs using a network biology approach |
| Q37061489 | Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation |
| Q36762729 | Functionalization of an Antisense Small RNA. |
| Q36397172 | Fur-mediated global regulatory circuits in pathogenic Neisseria species. |
| Q40512113 | Genetic Regulation of Yersinia pestis |
| Q21561015 | Genome sequence and transcriptome analysis of the radioresistant bacterium Deinococcus gobiensis: insights into the extreme environmental adaptations |
| Q28834060 | Genome-Wide Detection of Predicted Non-coding RNAs Related to the Adhesion Process in Vibrio alginolyticus Using High-Throughput Sequencing |
| Q33799810 | Genome-Wide Detection of Small Regulatory RNAs in Deep-Sea Bacterium Shewanella piezotolerans WP3 |
| Q36577159 | Genome-wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus. |
| Q34888345 | Genome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions |
| Q28085500 | Genome-wide analyses of small non-coding RNAs in streptococci |
| Q33525404 | Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array |
| Q34532627 | Genome-wide discovery of small RNAs in Mycobacterium tuberculosis |
| Q64059798 | Genome-wide discovery of structured noncoding RNAs in bacteria |
| Q34245313 | Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa |
| Q34722556 | Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile. |
| Q28247876 | Genome-wide identification of small RNAs in the opportunistic pathogen Enterococcus faecalis V583 |
| Q89763262 | Genome-wide identification of the context-dependent sRNA expression in Mycobacterium tuberculosis |
| Q35160857 | Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti. |
| Q24633132 | Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts |
| Q38994591 | Global Transcriptional Responses to Osmotic, Oxidative, and Imipenem Stress Conditions in Pseudomonas putida |
| Q33419895 | Global analysis of posttranscriptional regulation by GlmY and GlmZ in enterohemorrhagic Escherichia coli O157:H7 |
| Q42947469 | Global approaches for finding small RNA and small open reading frame functions |
| Q38648617 | Global assessment of small RNAs reveals a non-coding transcript involved in biofilm formation and attachment in Acinetobacter baumannii ATCC 17978. |
| Q28246632 | Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence |
| Q59789440 | Global discovery of small RNAs in the fish pathogen Edwardsiella piscicida: key regulator of adversity and pathogenicity |
| Q38025363 | Global discovery of small noncoding RNAs in pathogenic Yersinia species |
| Q33724452 | Global effects of the DEAD-box RNA helicase DeaD (CsdA) on gene expression over a broad range of temperatures |
| Q34623152 | Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021. |
| Q39798384 | Global small RNA chaperone Hfq and regulatory small RNAs are important virulence regulators in Erwinia amylovora |
| Q37833678 | Global survey of mRNA levels and decay rates of Chlamydia trachomatis trachoma and lymphogranuloma venereum biovars. |
| Q35624257 | Global transcriptome analysis reveals small RNAs affecting Neisseria meningitidis bacteremia. |
| Q34362103 | Global transcriptome and physiological responses of Acinetobacter oleivorans DR1 exposed to distinct classes of antibiotics |
| Q33762888 | Global transcriptome responses including small RNAs during mixed-species interactions with methicillin-resistant Staphylococcus aureus and Pseudomonas aeruginosa |
| Q34202709 | Glucose uptake regulation in E. coli by the small RNA SgrS: comparative analysis of E. coli K-12 (JM109 and MG1655) and E. coli B (BL21) |
| Q42092083 | Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs. |
| Q34308667 | Helicobacter pylori 5'ureB-sRNA, a cis-encoded antisense small RNA, negatively regulates ureAB expression by transcription termination |
| Q91935778 | Hfq Globally Binds and Destabilizes sRNAs and mRNAs in Yersinia pestis |
| Q42601067 | Hfq affects the expression of the LEE pathogenicity island in enterohaemorrhagic Escherichia coli |
| Q50030594 | Hfq and Hfq-dependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar Typhimurium |
| Q51271782 | Hfq and three Hfq-dependent small regulatory RNAs-MgrR, RyhB and McaS-coregulate the locus of enterocyte effacement in enteropathogenic Escherichia coli. |
| Q37015883 | Hfq assists small RNAs in binding to the coding sequence of ompD mRNA and in rearranging its structure |
| Q36276430 | Hfq influences multiple transport systems and virulence in the plant pathogen Agrobacterium tumefaciens. |
| Q38351169 | Hfq negatively regulates type III secretion in EHEC and several other pathogens |
| Q42146755 | Hfq restructures RNA-IN and RNA-OUT and facilitates antisense pairing in the Tn10/IS10 system |
| Q64067281 | Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation |
| Q36346667 | Hfq-dependent, co-ordinate control of cyclic diguanylate synthesis and catabolism in the plague pathogen Yersinia pestis |
| Q36224652 | Hierarchical Post-transcriptional Regulation of Colicin E2 Expression in Escherichia coli |
| Q36834654 | High-throughput identification of promoters and screening of highly active promoter-5'-UTR DNA region with different characteristics from Bacillus thuringiensis |
| Q92709550 | High-throughput screen reveals sRNAs regulating crRNA biogenesis by targeting CRISPR leader to repress Rho termination |
| Q34927627 | Honing the message: post-transcriptional and post-translational control in attaching and effacing pathogens |
| Q34571576 | Hot transcriptomics |
| Q52558915 | Human tRNA-Derived Small RNAs Modulate Host-Oral Microbial Interactions. |
| Q45860961 | Hypothesis for heritable, anti-viral immunity in crustaceans and insects |
| Q36978725 | Identification and Characterization of Novel Small RNAs in Rickettsia prowazekii |
| Q55369328 | Identification and Characterization of a Cis Antisense RNA of the rpoH Gene of Salmonella enterica Serovar Typhi. |
| Q34342486 | Identification and characterization of a cis-encoded antisense RNA associated with the replication process of Salmonella enterica serovar Typhi |
| Q33558040 | Identification and characterization of noncoding small RNAs in Streptococcus pneumoniae serotype 2 strain D39. |
| Q36901773 | Identification and characterization of small RNAs in Yersinia pestis |
| Q30657427 | Identification and characterization of three Vibrio alginolyticus non-coding RNAs involved in adhesion, chemotaxis, and motility processes |
| Q34238399 | Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi. |
| Q24621796 | Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae |
| Q34206765 | Identification by cDNA cloning of abundant sRNAs in a human-avirulent Yersinia pestis strain grown under five different growth conditions |
| Q41510653 | Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae. |
| Q33931101 | Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi. |
| Q52595198 | Identification of Plasmid-Encoded sRNAs in a blaNDM-1-Harboring Multidrug-Resistance Plasmid pNDM-HK in Enterobacteriaceae. |
| Q30394052 | Identification of RNAIII-binding proteins in Staphylococcus aureus using tethered RNAs and streptavidin aptamers based pull-down assay. |
| Q34470763 | Identification of a Novel Small Non-Coding RNA Modulating the Intracellular Survival of Brucella melitensis |
| Q24594435 | Identification of a chitin-induced small RNA that regulates translation of the tfoX gene, encoding a positive regulator of natural competence in Vibrio cholerae |
| Q34359360 | Identification of a novel small RNA modulating Francisella tularensis pathogenicity |
| Q36337696 | Identification of bacterial sRNA regulatory targets using ribosome profiling. |
| Q21267202 | Identification of genes for small non-coding RNAs that belong to the regulon of the two-component regulatory system CiaRH in Streptococcus |
| Q43445316 | Identification of microRNA-size, small RNAs in Escherichia coli |
| Q33791116 | Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm |
| Q27496603 | Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays |
| Q28237546 | Identification of novel regulatory small RNAs in Acinetobacter baumannii |
| Q36164568 | Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli |
| Q34425836 | Identification of novel small RNAs and characterization of the 6S RNA of Coxiella burnetii |
| Q24622905 | Identification of regulatory RNAs in Bacillus subtilis |
| Q34056830 | Identification of regulatory elements that control expression of the tbpBA operon in Neisseria gonorrhoeae |
| Q34103665 | Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions. |
| Q24595810 | Identification of small RNAs in Francisella tularensis |
| Q39516571 | Identification of small RNAs in Mycobacterium smegmatis using heterologous Hfq |
| Q24651584 | Identification of small RNAs in Mycobacterium tuberculosis |
| Q35574539 | Identification of the base-pairing requirements for repression of hctA translation by the small RNA IhtA leads to the discovery of a new mRNA target in Chlamydia trachomatis |
| Q37253044 | Identification of the set of genes, including nonannotated morA, under the direct control of ModE in Escherichia coli. |
| Q34740470 | Identifying and characterizing Hfq-RNA interactions |
| Q33968334 | Impact of Hfq on global gene expression and virulence in Klebsiella pneumoniae |
| Q42183406 | Impact of hfq on the intrinsic drug resistance of salmonella enterica serovar typhimurium |
| Q36756338 | Implications of streamlining theory for microbial ecology |
| Q43808341 | Improving E. coli growth performance by manipulating small RNA expression. |
| Q89625583 | In silico prediction and expression profile analysis of small non-coding RNAs in Herbaspirillum seropedicae SmR1 |
| Q35000915 | In vivo expression and purification of aptamer-tagged small RNA regulators |
| Q34026223 | In vivo mRNA profiling of uropathogenic Escherichia coli from diverse phylogroups reveals common and group-specific gene expression profiles |
| Q34837547 | Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti. |
| Q35943211 | Induction of the Pho regulon suppresses the growth defect of an Escherichia coli sgrS mutant, connecting phosphate metabolism to the glucose-phosphate stress response |
| Q28658016 | Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia |
| Q38141997 | Influence of small RNAs on biofilm formation process in bacteria. |
| Q40631587 | Inhibition of Phagocytic Killing of Escherichia coli in Drosophila Hemocytes by RNA Chaperone Hfq. |
| Q42368393 | Insights into transcription termination of Hfq-binding sRNAs of Escherichia coli and characterization of readthrough products |
| Q28289704 | Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA |
| Q33530403 | Integration of 'omics' data: does it lead to new insights into host-microbe interactions? |
| Q24489928 | Integrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responses |
| Q27666877 | Interaction of the Cas6 Riboendonuclease with CRISPR RNAs: Recognition and Cleavage |
| Q50043209 | Interesting twists on small RNA themes in Pseudomonas aeruginosa |
| Q31133192 | Intrinsic noise of microRNA-regulated genes and the ceRNA hypothesis |
| Q35978902 | Intrinsic plasmids influence MicF-mediated translational repression of ompF in Yersinia pestis |
| Q37574204 | Inverse regulation of Fe- and Ni-containing SOD genes by a Fur family regulator Nur through small RNA processed from 3'UTR of the sodF mRNA |
| Q34298528 | Involvement of Enterococcus faecalis small RNAs in stress response and virulence. |
| Q52366712 | Iron and Zinc Regulate Expression of a Putative ABC Metal Transporter in Corynebacterium diphtheriae. |
| Q35627033 | Iron responsive mRNAs: a family of Fe2+ sensitive riboregulators |
| Q24651873 | Is evolution Darwinian or/and Lamarckian? |
| Q44594337 | IscR Regulation of Type 3 Fimbriae Expression in Klebsiella pneumoniae CG43. |
| Q35852136 | Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes |
| Q47262252 | Isolation and Characterization of a microRNA-size Secretable Small RNA in Streptococcus sanguinis. |
| Q50053736 | Kill the messenger: bacterial antisense RNA promotes mRNA decay |
| Q44402746 | Kinetic Monte Carlo approach to RNA folding dynamics using structure-based models |
| Q24619082 | LC/MS analysis of cellular RNA reveals NAD-linked RNA |
| Q35016688 | Lactobacillus reuteri-specific immunoregulatory gene rsiR modulates histamine production and immunomodulation by Lactobacillus reuteri |
| Q36538725 | Lambda Red-mediated Recombineering in the Attaching and Effacing Pathogen Escherichia albertii |
| Q34523444 | Large-scale identification of small noncoding RNA with strand-specific deep sequencing and characterization of a novel virulence-related sRNA in Brucella melitensis |
| Q34510047 | Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity |
| Q38237997 | Latent tuberculosis infection: what we know about its genetic control? |
| Q33842112 | Legionella pneumophila 6S RNA optimizes intracellular multiplication |
| Q64976673 | Ligand recognition and helical stacking formation are intimately linked in the SAM-I riboswitch regulatory mechanism. |
| Q38269558 | Lipid nanoparticles for short interfering RNA delivery |
| Q38964423 | LoaP is a broadly conserved antiterminator protein that regulates antibiotic gene clusters in Bacillus amyloliquefaciens |
| Q35665329 | Locked nucleic acid and flow cytometry-fluorescence in situ hybridization for the detection of bacterial small noncoding RNAs |
| Q36015507 | Locked nucleic acid flow cytometry-fluorescence in situ hybridization (LNA flow-FISH): a method for bacterial small RNA detection |
| Q51535962 | Loop structures in the 5' untranslated region and antisense RNA mediate pilE gene expression in Neisseria gonorrhoeae. |
| Q36655548 | Loss of Conserved Noncoding RNAs in Genomes of Bacterial Endosymbionts |
| Q37771970 | LuxR-type quorum-sensing regulators that are detached from common scents |
| Q52656206 | Maestro of regulation: Riboswitches orchestrate gene expression at the levels of translation, transcription and mRNA decay. |
| Q37236308 | Mapping the Regulatory Network for Salmonella enterica Serovar Typhimurium Invasion |
| Q40542112 | Maturation of 6S regulatory RNA to a highly elongated structure |
| Q34192636 | Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation |
| Q64928887 | Mechanisms for Hfq-Independent Activation of rpoS by DsrA, a Small RNA, in Escherichia coli. |
| Q53606806 | Mechanisms of Evolutionary Innovation Point to Genetic Control Logic as the Key Difference Between Prokaryotes and Eukaryotes. |
| Q37676483 | Mechanisms of post-transcriptional gene regulation in bacterial biofilms |
| Q38969993 | Mechanistic study of base-pairing small regulatory RNAs in bacteria. |
| Q27311533 | Membrane recognition and dynamics of the RNA degradosome |
| Q38591792 | Metabolic engineering of Escherichia coli to improve recombinant protein production |
| Q57016801 | Metabolomic analysis of a synthetic metabolic switch in Streptomyces coelicolor A3(2) |
| Q90286101 | Methods and advances in RNA characterization and design |
| Q24629569 | MicA sRNA links the PhoP regulon to cell envelope stress |
| Q93017711 | MicroRNA-486-5p and microRNA-486-3p: Multifaceted pleiotropic mediators in oncological and non-oncological conditions |
| Q33719374 | Mining regulatory 5'UTRs from cDNA deep sequencing datasets |
| Q36248878 | Modeling sRNA-Regulated Plasmid Maintenance |
| Q49980737 | Modeling the interactions of sense and antisense Period transcripts in the mammalian circadian clock network. |
| Q42751615 | Modelling translation initiation under the influence of sRNA |
| Q33755567 | Modularity of Escherichia coli sRNA regulation revealed by sRNA-target and protein network analysis |
| Q61810923 | Modulation of Bacterial sRNAs Activity by Epigenetic Modifications: Inputs from the Eukaryotic miRNAs |
| Q27681865 | Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition |
| Q27003237 | Molecular call and response: the physiology of bacterial small RNAs |
| Q34327076 | Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria |
| Q33500688 | Motifs from the deep |
| Q34395461 | Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior |
| Q59000580 | Multiple Roles for the sRNA GcvB in the Regulation of Slp Levels in Escherichia coli |
| Q35931768 | Multiple factors dictate target selection by Hfq-binding small RNAs |
| Q42321810 | Multiple transcription-activating sequences regulate the RsmZ regulatory small RNA of Pseudomonas brassicacearum |
| Q37621287 | Mutational robustness accelerates the origin of novel RNA phenotypes through phenotypic plasticity |
| Q34322538 | Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets |
| Q39325488 | Natural antisense RNAs as mRNA regulatory elements in bacteria: a review on function and applications |
| Q40285241 | Neisseria meningitidis Uses Sibling Small Regulatory RNAs To Switch from Cataplerotic to Anaplerotic Metabolism |
| Q33533378 | Network inference and network response identification: moving genome-scale data to the next level of biological discovery |
| Q37863212 | New insights into riboswitch regulation mechanisms |
| Q38588199 | New insights on molecular regulation of biofilm formation in plant-associated bacteria |
| Q37576055 | New levels of sophistication in the transcriptional landscape of bacteria |
| Q57340332 | New molecular techniques for pathogen analysis, in silico determination of RND efflux pump substrate specificity, shotgun proteomic monitoring of bioremediation and yeast bio-applications |
| Q38062722 | New type I toxin-antitoxin families from "wild" and laboratory strains of E. coli: Ibs-Sib, ShoB-OhsC and Zor-Orz |
| Q91928891 | NfiR, a New Regulatory Noncoding RNA (ncRNA), Is Required in Concert with the NfiS ncRNA for Optimal Expression of Nitrogenase Genes in Pseudomonas stutzeri A1501 |
| Q40080150 | Non-Coding RNAs are Differentially Expressed by Nocardia brasiliensis in Vitro and in Experimental Actinomycetoma |
| Q28727945 | Non-coding RNA and its potential role in Mycobacterium tuberculosis pathogenesis |
| Q33844577 | Non-coding RNAs as regulators of embryogenesis |
| Q38109600 | Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective |
| Q42242509 | Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions |
| Q28263595 | Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq |
| Q35016286 | Noncoding RNA of glutamine synthetase I modulates antibiotic production in Streptomyces coelicolor A3(2). |
| Q26700139 | Novel Insights into Insect-Microbe Interactions-Role of Epigenomics and Small RNAs |
| Q40091765 | Novel small RNA (sRNA) landscape of the starvation-stress response transcriptome of Salmonella enterica serovar typhimurium |
| Q34389899 | NrsZ: a novel, processed, nitrogen-dependent, small non-coding RNA that regulates Pseudomonas aeruginosa PAO1 virulence |
| Q36144898 | OLE RNA protects extremophilic bacteria from alcohol toxicity |
| Q28710346 | Omics strategies for revealing Yersinia pestis virulence |
| Q89824505 | On a stake-out: Mycobacterial small RNA identification and regulation |
| Q33710429 | Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA. |
| Q42131924 | Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro |
| Q41933545 | PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences |
| Q33352676 | Pathway engineering via quorum sensing and sRNA riboregulators-interconnected networks and controllers |
| Q35004344 | Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications |
| Q43497874 | Pervasive transcription: illuminating the dark matter of bacterial transcriptomes |
| Q24605734 | Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli |
| Q36095406 | Plasmid pPCP1-derived sRNA HmsA promotes biofilm formation of Yersinia pestis |
| Q34056874 | Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile |
| Q58702556 | Poly(A) polymerase is required for RyhB sRNA stability and function in |
| Q35164771 | PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action |
| Q57281642 | Polynucleotide phosphorylase: Not merely an RNase but a pivotal post-transcriptional regulator |
| Q34006620 | Positive regulation by small RNAs and the role of Hfq |
| Q46254732 | Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803. |
| Q57344163 | Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus |
| Q38016604 | Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems. |
| Q37519884 | Posttranscriptional control of microbe-induced rearrangement of host cell actin |
| Q38201636 | Posttranscriptional regulation of oral bacterial adaptive responses |
| Q47096824 | Potential and use of bacterial small RNAs to combat drug resistance: a systematic review. |
| Q34385341 | Prediction and characterization of small non-coding RNAs related to secondary metabolites in Saccharopolyspora erythraea |
| Q33963708 | Prevalence of Haemophilus influenzae type b genetic islands among clinical and commensal H. influenzae and H. haemolyticus isolates |
| Q47243718 | Primary Characterization of Small RNAs in Symbiotic Nitrogen-Fixing Bacteria. |
| Q39216080 | ProQ/FinO-domain proteins: another ubiquitous family of RNA matchmakers? |
| Q33798373 | Probing bacterial pathogenesis with genetics, genomics, and chemical biology: past, present, and future approaches |
| Q24490074 | Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens |
| Q30490196 | Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements |
| Q84947079 | Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity |
| Q41919680 | Prokaryotic whole-transcriptome analysis: deep sequencing and tiling arrays |
| Q28654385 | Prospects for riboswitch discovery and analysis |
| Q90560683 | Proteins That Chaperone RNA Regulation |
| Q42120575 | Proteome-wide alterations in Escherichia coli translation rates upon anaerobiosis. |
| Q33705174 | Proteomic alterations explain phenotypic changes in Sinorhizobium meliloti lacking the RNA chaperone Hfq. |
| Q34122263 | Proteomics identification of Drosophila small interfering RNA-associated factors. |
| Q41005426 | Quantifying mRNA synthesis and decay rates using small RNAs |
| Q28742043 | Quantifying the sequence-function relation in gene silencing by bacterial small RNAs |
| Q34510098 | Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction |
| Q35683145 | Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets. |
| Q33785428 | R2R--software to speed the depiction of aesthetic consensus RNA secondary structures |
| Q54253141 | RETRACTED: A small non-coding RNA AbcR2 regulate gntR transcription factor that modulate the intracellular survival of Brucella melitensis. |
| Q42413406 | RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model |
| Q64249042 | RNA Regulatory Networks as a Control of Stochasticity in Biological Systems |
| Q35224362 | RNA degradome--its biogenesis and functions |
| Q39436206 | RNA search engines empower the bacterial intranet |
| Q29114114 | RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes |
| Q37590464 | RNA-Seq for Plant Pathogenic Bacteria |
| Q28299505 | RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation |
| Q36153900 | RNA-Seq of Borrelia burgdorferi in Multiple Phases of Growth Reveals Insights into the Dynamics of Gene Expression, Transcriptome Architecture, and Noncoding RNAs |
| Q89975694 | RNA-Sequencing Analyses of Small Bacterial RNAs and their Emergence as Virulence Factors in Host-Pathogen Interactions |
| Q37392994 | RNA-based computation in live cells |
| Q38839256 | RNA-based mechanisms of virulence control in Enterobacteriaceae |
| Q103027678 | RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae |
| Q35183286 | RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri |
| Q39346536 | RNA-seq-based comparative transcriptome analysis of the syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528 grown autotrophically and heterotrophically |
| Q41429696 | RNAs actively cycle on the Sm-like protein Hfq. |
| Q45095625 | RNAs: regulators of bacterial virulence |
| Q33735198 | RNAseq Reveals Complex Response of Campylobacter jejuni to Ovine Bile and In vivo Gallbladder Environment |
| Q38782283 | RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA. |
| Q42618064 | RNase E action at a distance: degradation of target mRNAs mediated by an Hfq-binding small RNA in bacteria |
| Q38067568 | RNase E: at the interface of bacterial RNA processing and decay |
| Q34538123 | RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA. |
| Q49238453 | RNase III-Binding-mRNAs Revealed Novel Complementary Transcripts in Streptomyces |
| Q50673090 | RT-qPCR with chimeric dU stem-loop primer is efficient for the detection of bacterial small RNAs. |
| Q28658954 | RalR (a DNase) and RalA (a small RNA) form a type I toxin-antitoxin system in Escherichia coli |
| Q37111565 | RaoN, a small RNA encoded within Salmonella pathogenicity island-11, confers resistance to macrophage-induced stress |
| Q38349121 | Rapid cleavage of RNA by RNase E in the absence of 5' monophosphate stimulation |
| Q98164077 | Reading between the Lines: Utilizing RNA-Seq Data for Global Analysis of sRNAs in Staphylococcus aureus |
| Q27025849 | Recent molecular insights into rickettsial pathogenesis and immunity |
| Q24603059 | Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family |
| Q35377223 | Reduced heme levels underlie the exponential growth defect of the Shewanella oneidensis hfq mutant |
| Q35878107 | Reducing acetate excretion from E. coli K-12 by over-expressing the small RNA SgrS. |
| Q34809856 | Regulated RNA stability in the Gram positives |
| Q37906535 | Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis |
| Q37362802 | Regulating the regulator: an RNA decoy acts as an OFF switch for the regulation of an sRNA. |
| Q34485023 | Regulation and Function of Escherichia coli Sugar Efflux Transporter A (SetA) during Glucose-Phosphate Stress |
| Q27009044 | Regulation by small RNAs in bacteria: expanding frontiers |
| Q40047509 | Regulation of Neisseria meningitidis cytochrome bc1 components by NrrF, a Fur-controlled small noncoding RNA. |
| Q40162070 | Regulation of a muralytic enzyme-encoding gene by two non-coding RNAs |
| Q36343036 | Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ. |
| Q33979818 | Regulation of oxidative stress response by CosR, an essential response regulator in Campylobacter jejuni |
| Q40112616 | Regulation of the Locus of Enterocyte Effacement in Attaching and Effacing Pathogens |
| Q42714248 | Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway |
| Q39455740 | Regulatory 3' Untranslated Regions of Bacterial mRNAs |
| Q38435296 | Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression. |
| Q43030235 | Regulatory RNAs in Haloferax volcanii |
| Q38077251 | Regulatory RNAs in archaea: first target identification in Methanoarchaea. |
| Q37835848 | Regulatory RNAs in cyanobacteria: developmental decisions, stress responses and a plethora of chromosomally encoded cis-antisense RNAs. |
| Q35233789 | Regulatory RNAs involved in bacterial antibiotic resistance |
| Q38172811 | Regulatory RNAs: charming gene management styles for synthetic biology applications |
| Q38819727 | Regulatory mechanisms related to biofuel tolerance in producing microbes |
| Q58587570 | Regulatory sRNAs in Cyanobacteria |
| Q24606364 | Reprogramming of anaerobic metabolism by the FnrS small RNA |
| Q36228436 | Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY. |
| Q37340855 | Rho directs widespread termination of intragenic and stable RNA transcription. |
| Q34420254 | RiboMaker: computational design of conformation-based riboregulation |
| Q43183108 | Riboswitches. A riboswitch-containing sRNA controls gene expression by sequestration of a response regulator. |
| Q39103598 | Role of Non-coding Regulatory RNA in the Virulence of Human Pathogenic Vibrios. |
| Q26766030 | Role of Small Noncoding RNAs in Bacterial Metabolism |
| Q34985832 | Role of polynucleotide phosphorylase in sRNA function in Escherichia coli |
| Q35100510 | Role of the Streptococcus mutans CRISPR-Cas systems in immunity and cell physiology. |
| Q41432718 | Role of the terminator hairpin in the biogenesis of functional Hfq-binding sRNAs |
| Q40624537 | RpoS-dependent sRNA RgsA regulates Fis and AcpP in Pseudomonas aeruginosa. |
| Q24655392 | Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1 |
| Q28477804 | Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis |
| Q60937451 | Sequence-based bacterial small RNAs prediction using ensemble learning strategies |
| Q37676227 | Sibling sRNA RyfA1 Influences Shigella dysenteriae Pathogenesis |
| Q34335618 | Significant rewiring of the transcriptome and proteome of an Escherichia coli strain harboring a tailored exogenous global regulator IrrE. |
| Q30364328 | Silencing of natural transformation by an RNA chaperone and a multitarget small RNA. |
| Q41568951 | Single-nucleotide resolution of RNAs up to 59 nucleotides by high-performance liquid chromatography |
| Q28074775 | Small Non-Coding RNAs: New Insights in Modulation of Host Immune Response by Intracellular Bacterial Pathogens |
| Q36709429 | Small RNA Regulation of TolC, the Outer Membrane Component of Bacterial Multidrug Transporters |
| Q35696021 | Small RNA Transcriptome of the Oral Microbiome during Periodontitis Progression |
| Q28727846 | Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition |
| Q36342728 | Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA. |
| Q64259739 | Small RNA expression from viruses, bacteria and human miRNAs in colon cancer tissue and its association with microsatellite instability and tumor location |
| Q38235406 | Small RNA functions in carbon metabolism and virulence of enteric pathogens |
| Q38187359 | Small RNA regulators in bacteria: powerful tools for metabolic engineering and synthetic biology |
| Q46246769 | Small RNA repertoires and their intraspecies variation in Aggregatibacter actinomycetemcomitans |
| Q21131371 | Small RNA sX13: a multifaceted regulator of virulence in the plant pathogen Xanthomonas |
| Q50082693 | Small RNA-mediated Cry toxin silencing allows Bacillus thuringiensis to evade Caenorhabditis elegans avoidance behavioral defenses |
| Q34164476 | Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein |
| Q37587009 | Small RNA-mediated regulation of host-pathogen interactions |
| Q24654108 | Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection |
| Q96954783 | Small RNAs as Fundamental Players in the Transference of Information During Bacterial Infectious Diseases |
| Q37878988 | Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species |
| Q26998827 | Small RNAs for defence and regulation in archaea |
| Q97518411 | Small RNAs in Outer Membrane Vesicles and Their Function in Host-Microbe Interactions |
| Q38230079 | Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli |
| Q34514381 | Small RNAs in the genus Clostridium |
| Q95355807 | Small RNAs of Borrelia burgdorferi: Characterizing Functional Regulators in a Sea of sRNAs |
| Q41295271 | Small RNAs regulating biofilm formation and outer membrane homeostasis |
| Q26852464 | Small RNAs, 5' UTR elements and RNA-binding proteins in intracellular bacteria: impact on metabolism and virulence |
| Q35155330 | Small Regulatory RNA and Legionella pneumophila. |
| Q93129030 | Small non-coding RNA STnc640 regulates expression of fimA fimbrial gene and virulence of Salmonella enterica serovar Enteritidis |
| Q38199304 | Small non-coding RNAs in plant-pathogenic Xanthomonas spp. |
| Q38418062 | Small regulatory RNAs and the fine-tuning of plant–bacteria interactions |
| Q42500644 | Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli. |
| Q34122750 | Small regulatory RNAs in Archaea |
| Q34254544 | Small regulatory RNAs in Pseudomonas aeruginosa |
| Q39014913 | Small regulatory RNAs in Streptococcus pneumoniae: discovery and biological functions |
| Q39579428 | Small transcriptome analysis indicates that the enzyme RppH influences both the quality and quantity of sRNAs in Neisseria gonorrhoeae |
| Q21131561 | Staphylococcus aureus RNAIII binds to two distant regions of coa mRNA to arrest translation and promote mRNA degradation |
| Q44978997 | Stochastic modeling of regulation of gene expression by multiple small RNAs |
| Q52424559 | Strand-specific RNA-seq analysis of the Lactobacillus delbrueckii subsp. bulgaricus transcriptome. |
| Q38828644 | Strategies of genome editing in mycobacteria: Achievements and challenges |
| Q27670724 | Structural basis for RNA 3'-end recognition by Hfq |
| Q27690232 | Structural basis of the non-coding RNA RsmZ acting as a protein sponge |
| Q48663511 | Structural messenger RNA contains cytokeratin polymerization and depolymerization signals |
| Q38093756 | Structure and RNA-binding properties of the bacterial LSm protein Hfq. |
| Q90068768 | Surface association sensitizes Pseudomonas aeruginosa to quorum sensing |
| Q34532946 | SwiSpot: modeling riboswitches by spotting out switching sequences |
| Q34797301 | Synthetic RNA Silencing of Actinorhodin Biosynthesis in Streptomyces coelicolor A3(2). |
| Q37937449 | Synthetic RNA silencing in bacteria - antimicrobial discovery and resistance breaking |
| Q58742109 | Synthetic negative feedback circuits using engineered small RNAs |
| Q35569225 | Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics |
| Q37685981 | Systematic and functional identification of small non-coding RNAs associated with exogenous biofuel stress in cyanobacterium Synechocystis sp. PCC 6803. |
| Q21093236 | Taming of the shrewd: novel eukaryotic genes from RNA viruses |
| Q28081126 | Target activation by regulatory RNAs in bacteria |
| Q44821305 | Target evaluation of the non-coding csRNAs reveals a link of the two-component regulatory system CiaRH to competence control in Streptococcus pneumoniae R6. |
| Q28260482 | Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli |
| Q36240637 | Temperature-dependent sRNA transcriptome of the Lyme disease spirochete |
| Q91807373 | The Bacterial Amyloid-Like Hfq Promotes In Vitro DNA Alignment |
| Q41676477 | The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli |
| Q37442314 | The CCA anticodon specifies separate functions inside and outside translation in Bacillus cereus |
| Q36179317 | The Conserved Dcw Gene Cluster of R. sphaeroides Is Preceded by an Uncommonly Extended 5' Leader Featuring the sRNA UpsM |
| Q58111704 | The Distinctive Regulation of Cyanobacterial Glutamine Synthetase |
| Q36159650 | The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress |
| Q51627824 | The Non-Coding RNA Ncr0700/PmgR1 is Required for Photomixotrophic Growth and the Regulation of Glycogen Accumulation in the Cyanobacterium Synechocystis sp. PCC 6803. |
| Q53706119 | The PhyR homolog RSP_1274 of Rhodobacter sphaeroides is involved in defense of membrane stress and has a moderate effect on RpoE (RSP_1092) activity. |
| Q47907885 | The RNA chaperone Hfq enables the environmental stress tolerance super-phenotype of Pseudomonas putida |
| Q28538741 | The RNA chaperone Hfq impacts growth, metabolism and production of virulence factors in Yersinia enterocolitica |
| Q37264875 | The RNA chaperone Hfq is required for virulence of Bordetella pertussis |
| Q35943252 | The RNA chaperone Hfq regulates antibiotic biosynthesis in the rhizobacterium Pseudomonas aeruginosa M18. |
| Q82660003 | The RNA structurome: high-throughput probing |
| Q41930343 | The Regulatory Small RNA MarS Supports Virulence of Streptococcus pyogenes. |
| Q33705134 | The Sinorhizobium meliloti RNA chaperone Hfq mediates symbiosis of S. meliloti and alfalfa |
| Q39326888 | The Small RNA GcvB Promotes Mutagenic Break Repair by Opposing the Membrane Stress Response |
| Q48188896 | The Small RNA ncS35 Regulates Growth in Burkholderia cenocepacia J2315. |
| Q55249589 | The Small Regulatory Antisense RNA PilR Affects Pilus Formation and Cell Motility by Negatively Regulating pilA11 in Synechocystis sp. PCC 6803. |
| Q47161340 | The Small Regulatory RNA Spot42 Inhibits Indole Biosynthesis to Negatively Regulate the Locus of Enterocyte Effacement of Enteropathogenic Escherichia coli |
| Q33851489 | The Staphylococcus aureus RNome and its commitment to virulence |
| Q33626250 | The Streptococcus suis transcriptional landscape reveals adaptation mechanisms in pig blood and cerebrospinal fluid. |
| Q64976693 | The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi. |
| Q28067397 | The Tip of the Iceberg: On the Roles of Regulatory Small RNAs in the Virulence of Enterohemorrhagic and Enteropathogenic Escherichia coli |
| Q60307884 | The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence |
| Q36191630 | The VrrA sRNA controls a stationary phase survival factor Vrp of Vibrio cholerae |
| Q24606909 | The ZorO-OrzO type I toxin-antitoxin locus: repression by the OrzO antitoxin |
| Q34431840 | The accessory genome of Pseudomonas aeruginosa |
| Q42744238 | The adaptation of temperate bacteriophages to their host genomes. |
| Q90196530 | The bacterial endoribonuclease RNase E can cleave RNA in the absence of the RNA chaperone Hfq |
| Q24622607 | The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli |
| Q33661903 | The centrality of RNA for engineering gene expression |
| Q31133769 | The complete Campylobacter jejuni transcriptome during colonization of a natural host determined by RNAseq |
| Q38102646 | The contribution of proteomics to the unveiling of the survival strategies used by Pseudomonas putida in changing and hostile environments |
| Q42103322 | The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq. |
| Q38119536 | The dark matter rises: the expanding world of regulatory RNAs. |
| Q41830706 | The dawning era of comprehensive transcriptome analysis in cellular microbiology |
| Q38341985 | The delta subunit of RNA polymerase, RpoE, is a global modulator of Streptococcus mutans environmental adaptation |
| Q42730189 | The evolution of gene regulation, the RNA universe, and the vexed questions of artefact and noise |
| Q44674694 | The excludon: a new concept in bacterial antisense RNA-mediated gene regulation |
| Q34228096 | The expanding view of RNA and DNA function |
| Q34281829 | The expression of small regulatory RNAs in clinical samples reflects the different life styles of Staphylococcus aureus in colonization vs. infection |
| Q35286036 | The gastrointestinal tract microbiome, probiotics, and mood |
| Q21092408 | The genome organization of Thermotoga maritima reflects its lifestyle |
| Q24624170 | The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript |
| Q41370345 | The hmsT 3' untranslated region mediates c-di-GMP metabolism and biofilm formation in Yersinia pestis |
| Q41199610 | The identification and functional annotation of RNA structures conserved in vertebrates. |
| Q36032844 | The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex |
| Q34045712 | The importance of the small RNA chaperone Hfq for growth of epidemic Yersinia pestis, but not Yersinia pseudotuberculosis, with implications for plague biology |
| Q47767055 | The important conformational plasticity of DsrA sRNA for adapting multiple target regulation |
| Q35017796 | The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages |
| Q34115395 | The iron-sensing aconitase B binds its own mRNA to prevent sRNA-induced mRNA cleavage |
| Q36180214 | The magnitude and colour of noise in genetic negative feedback systems |
| Q49955783 | The malS-5'UTR regulates hisG, a key gene in the histidine biosynthetic pathway in Salmonella enterica serovar Typhi |
| Q36189994 | The multicopy sRNA LhrC controls expression of the oligopeptide-binding protein OppA in Listeria monocytogenes |
| Q37983037 | The mysterious RAMP proteins and their roles in small RNA-based immunity |
| Q37984186 | The non-coding RNA world of the bacterial pathogen Listeria monocytogenes |
| Q34497080 | The novel cis-encoded antisense RNA AsrC positively regulates the expression of rpoE-rseABC operon and thus enhances the motility of Salmonella enterica serovar typhi |
| Q47945575 | The novel sRNA s015 improves nisin yield by increasing acid tolerance of Lactococcus lactis F44. |
| Q28273545 | The primary transcriptome of the major human pathogen Helicobacter pylori |
| Q92902297 | The protein regulator ArgR and the sRNA derived from the 3'-UTR region of its gene, ArgX, both regulate the arginine deiminase pathway in Lactococcus lactis |
| Q37800058 | The roles of pathogen small RNAs |
| Q34499150 | The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7. |
| Q34469894 | The sRNA SorY confers resistance during photooxidative stress by affecting a metabolite transporter in Rhodobacter sphaeroides |
| Q34426518 | The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature |
| Q36276342 | The small RNA RteR inhibits transfer of the Bacteroides conjugative transposon CTnDOT. |
| Q50030555 | The small RNA RybA regulates key-genes in the biosynthesis of aromatic amino acids under peroxide stress in E. coli. |
| Q24598644 | The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes |
| Q34293312 | The small regulatory RNA FasX controls pilus expression and adherence in the human bacterial pathogen group A Streptococcus |
| Q34440092 | The small regulatory RNA SyR1/PsrR1 controls photosynthetic functions in cyanobacteria |
| Q21263115 | The small regulatory RNA molecule MicA is involved in Salmonella enterica serovar Typhimurium biofilm formation |
| Q33785527 | The stoichiometry of the Escherichia coli Hfq protein bound to RNA. |
| Q28277062 | The target spectrum of SdsR small RNA in Salmonella |
| Q34307929 | The toxin-antitoxin system tisB-istR1: Expression, regulation, and biological role in persister phenotypes |
| Q34337685 | The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems |
| Q21266691 | The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain |
| Q36767589 | The unmasking of 'junk' RNA reveals novel sRNAs: from processed RNA fragments to marooned riboswitches |
| Q54516256 | The yields of transcripts for a RNA polymerase regulated by hairpin structures in nascent RNAs. |
| Q36147132 | Thermal control of virulence factors in bacteria: a hot topic |
| Q33621553 | Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses |
| Q31089832 | Tigecycline challenge triggers sRNA production in Salmonella enterica serovar Typhimurium |
| Q38557121 | Tiny RNAs and their voyage via extracellular vesicles: Secretion of bacterial small RNA and eukaryotic microRNA. |
| Q52603392 | Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA‐binding protein Hfq |
| Q26865951 | To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems |
| Q34112189 | TonB-dependent transporters: regulation, structure, and function. |
| Q37658060 | Towards the complete small RNome of Acinetobacter baumannii |
| Q93143179 | Transcription attenuation-derived small RNA rnTrpL regulates tryptophan biosynthesis gene expression in trans |
| Q34561876 | Transcription of a cis-acting, noncoding, small RNA is required for pilin antigenic variation in Neisseria gonorrhoeae |
| Q35075071 | Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation |
| Q41912818 | Transcriptional and posttranscriptional events control copper-responsive expression of a Rhodobacter capsulatus multicopper oxidase. |
| Q49791507 | Transcriptional landscape and regulatory roles of small non-coding RNAs in the oxidative stress response of the haloarchaeon Haloferax volcanii |
| Q42018354 | Transcriptional pausing at the translation start site operates as a critical checkpoint for riboswitch regulation |
| Q40134314 | Transcriptional profiling of Rickettsia prowazekii coding and non-coding transcripts during in vitro host-pathogen and vector-pathogen interactions |
| Q94569499 | Transcriptome and translatome profiles of Streptomyces species in different growth phases |
| Q27016195 | Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori |
| Q35177800 | Transcriptome dynamics-based operon prediction in prokaryotes. |
| Q34517200 | Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism |
| Q28277185 | Translation inhibition of the developmental cycle protein HctA by the small RNA IhtA is conserved across Chlamydia |
| Q24620677 | Translation on demand by a simple RNA-based thermosensor |
| Q24634637 | Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli |
| Q44379430 | TubercuList--10 years after |
| Q94461584 | Tunable genetic devices through simultaneous control of transcription and translation |
| Q24633959 | Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis |
| Q37237994 | Two novel members of the LhrC family of small RNAs in Listeria monocytogenes with overlapping regulatory functions but distinctive expression profiles |
| Q37548346 | Ultra deep sequencing of Listeria monocytogenes sRNA transcriptome revealed new antisense RNAs |
| Q26796753 | Use of siRNA molecular beacons to detect and attenuate mycobacterial infection in macrophages |
| Q26865694 | Vitamin B12 as a modulator of gut microbial ecology |
| Q47888861 | What history tells us XXXIX. CRISPR-Cas: From a prokaryotic immune system to a universal genome editing tool |
| Q41915657 | Where to begin? Mapping transcription start sites genome-wide in Escherichia coli |
| Q39933027 | Whole-genome mapping of 5' RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis |
| Q91884806 | Widespread Utilization of Peptide Communication in Phages Infecting Soil and Pathogenic Bacteria |
| Q41895141 | Widespread antisense transcription in Escherichia coli. |
| Q42545665 | Widespread expression of conserved small RNAs in small symbiont genomes |
| Q26781380 | Yersinia pestis and Yersinia pseudotuberculosis infection: a regulatory RNA perspective |
| Q24490214 | dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42 |
| Q28277943 | ncRNAs and thermoregulation: a view in prokaryotes and eukaryotes |
| Q41207283 | sRNA-Mediated Control of Transcription Termination in E. coli |
| Q35751282 | sRNA-Mediated Regulation of P-Fimbriae Phase Variation in Uropathogenic Escherichia coli. |
| Q24611347 | sRNA-Xcc1, an integron-encoded transposon- and plasmid-transferred trans-acting sRNA, is under the positive control of the key virulence regulators HrpG and HrpX of Xanthomonas campestris pathovar campestris |
| Q34376087 | sRNAdb: a small non-coding RNA database for gram-positive bacteria |
| Q37480875 | tRNAs: cellular barcodes for amino acids. |
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