Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA

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Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA is …
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scholarly articleQ13442814

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P819ADS bibcode2010PNAS..10720435P
P356DOI10.1073/PNAS.1009784107
P3181OpenCitations bibliographic resource ID4582228
P932PMC publication ID2996696
P698PubMed publication ID21059903
P5875ResearchGate publication ID47717851

P50authorJörg VogelQ1107809
Cynthia SharmaQ22951263
Kai PapenfortQ41716560
Marie BouvierQ58212055
P2093author name stringFranziska Mika
P2860cites workDeep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, HfqQ21145046
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.Q24536474
Fast and effective prediction of microRNA/target duplexesQ24537313
Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destructionQ24546344
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coliQ24563596
A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)Q24594977
Regulatory RNAs in bacteriaQ24595082
Reprogramming of anaerobic metabolism by the FnrS small RNAQ24606364
MicroRNAs: target recognition and regulatory functionsQ24609584
MicA sRNA links the PhoP regulon to cell envelope stressQ24629569
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesisQ24633959
Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coliQ24634637
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUAQ24649054
The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulatorQ24653385
Most mammalian mRNAs are conserved targets of microRNAsQ24655061
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decayQ24669800
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sitesQ24672099
Spot 42 RNA mediates discoordinate expression of the E. coli galactose operonQ24674172
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimuriumQ24683356
Sigma E controls biogenesis of the antisense RNA MicAQ24684061
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coliQ24684800
Translational control and target recognition by Escherichia coli small RNAs in vivoQ24684847
Conserved and variable functions of the sigmaE stress response in related genomesQ24811266
The path of messenger RNA through the ribosomeQ27634165
Global analysis of small RNA and mRNA targets of HfqQ28184898
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiationQ28252581
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by HfqQ28253347
Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteinsQ28265898
Effect of RyhB small RNA on global iron use in Escherichia coliQ28275120
Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesisQ28275777
The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coliQ28280186
Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decodingQ28286135
A rough guide to the non-coding RNA world of SalmonellaQ28300754
Small RNA binding to 5' mRNA coding region inhibits translational initiationQ28305161
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAsQ29619938
The bacterial Sm-like protein Hfq: a key player in RNA transactionsQ29620062
SigmaE regulates and is regulated by a small RNA in Escherichia coliQ33281445
Target identification of small noncoding RNAs in bacteriaQ34004747
Antisense RNAs in bacteria and their genetic elementsQ34121867
Regulatory mechanisms employed by cis-encoded antisense RNAsQ34612437
Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removalQ36377532
Hfq structure, function and ligand bindingQ36774884
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional levelQ37444341
Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella entericaQ37451484
Small RNA-mediated regulation at the level of transcript stabilityQ37706896
mRNA helicase activity of the ribosomeQ38331986
Footprinting mRNA-ribosome complexes with chemical probesQ40792928
Quantifying mRNA synthesis and decay rates using small RNAsQ41005426
An antisense/target RNA duplex or a strong intramolecular RNA structure 5' of a translation initiation signal blocks ribosome binding: the case of plasmid R1.Q41904047
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
A small RNA downregulates LamB maltoporin in SalmonellaQ50070688
How the ribosome moves along the mRNA during protein synthesis.Q53014507
A 5'-terminal stem-loop structure can stabilize mRNA in Escherichia coliQ67531014
Secondary structures of Escherichia coli antisense micF RNA, the 5'-end of the target ompF mRNA, and the RNA/RNA duplexQ71681327
The use of RNAs complementary to specific mRNAs to regulate the expression of individual bacterial genesQ72732718
P433issue47
P407language of work or nameEnglishQ1860
P304page(s)20435-40
P577publication date2010-11-23
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleEvidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
P478volume107

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