Hfq and its constellation of RNA

scientific article (publication date: 15 August 2011)

Hfq and its constellation of RNA is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P6179Dimensions Publication ID1019983583
P356DOI10.1038/NRMICRO2615
P3181OpenCitations bibliographic resource ID176351
P932PMC publication ID4615618
P698PubMed publication ID21760622

P50authorJörg VogelQ1107809
Ben LuisiQ63346640
P2860cites workDeep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, HfqQ21145046
Global functional atlas of Escherichia coli encompassing previously uncharacterized proteinsQ21145830
Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translationQ21145881
Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membraneQ21562607
Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNAQ24311910
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.Q34327163
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coliQ34383062
Disruption of small RNA signaling caused by competition for Hfq.Q34508819
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genomeQ34707860
RETRACTED: The second RNA chaperone, Hfq2, is also required for survival under stress and full virulence of Burkholderia cenocepacia J2315.Q34740838
E. coli DNA associated with isolated Hfq interacts with Hfq's distal surface and C-terminal domainQ34769240
Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypesQ34971662
Role of polynucleotide phosphorylase in sRNA function in Escherichia coliQ34985832
Activation of gene expression by small RNA.Q35010723
Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.Q35040942
All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decayQ35133366
Hfq affects the length and the frequency of short oligo(A) tails at the 3' end of Escherichia coli rpsO mRNAsQ35164605
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq actionQ35164771
Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q betaQ36104877
Regulation of translation via mRNA structure in prokaryotes and eukaryotesQ36280619
Eukaryotic Lsm proteins: lessons from bacteriaQ36331209
The RNA binding protein Hfq interacts specifically with tRNAs.Q36470338
RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA.Q36802626
Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I.Q37105983
Evolutionary diversification of the Sm family of RNA-associated proteinsQ37238158
Structure of Escherichia coli Hfq bound to polyriboadenylate RNAQ27658064
Structural analysis of full-length Hfq fromEscherichia coliQ27667727
Structural basis for RNA 3'-end recognition by HfqQ27670724
Bacterial small RNA regulators: versatile roles and rapidly evolving variationsQ27692531
Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms.Q27931642
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signalQ28058215
Global analysis of small RNA and mRNA targets of HfqQ28184898
Novel small RNA-encoding genes in the intergenic regions of Escherichia coliQ28205853
Interactions of the non-coding RNA DsrA and RpoS mRNA with the 30 S ribosomal subunitQ28211455
The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAsQ28216159
Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coliQ28247175
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiationQ28252581
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by HfqQ28253347
Switching off small RNA regulation with trap-mRNAQ28255082
Interactions of ribosomal protein S1 with DsrA and rpoS mRNAQ28256030
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNAQ28257497
Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome bindingQ28266867
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio choleraeQ28270975
Effect of RyhB small RNA on global iron use in Escherichia coliQ28275120
Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesisQ28275777
A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNAQ28277876
Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decodingQ28286135
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAsQ28287313
Regulatory RNA in bacterial pathogensQ28288142
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNAQ28288672
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNAQ28289704
Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarityQ28290812
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase systemQ28291273
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAsQ28292183
Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNAQ28294752
Mechanism of RNA silencing by Hfq-binding small RNAsQ28294833
Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella entericaQ28296796
Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNAQ28297881
A small bacterial RNA regulates a putative ABC transporterQ28299894
Small RNA binding to 5' mRNA coding region inhibits translational initiationQ28305161
Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single CellsQ29039105
What is Cooperativity?Q29302467
The many pathways of RNA degradationQ29615760
Interaction network containing conserved and essential protein complexes in Escherichia coliQ29615776
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interactionQ29619904
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAsQ29619938
The bacterial Sm-like protein Hfq: a key player in RNA transactionsQ29620062
Hfq stimulates the activity of the CCA-adding enzyme.Q33303248
Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic toolsQ33373607
Hfq affects mRNA levels independently of degradationQ33532281
The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitorsQ33575093
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoidQ33638020
Mobility of cytoplasmic, membrane, and DNA-binding proteins in Escherichia coliQ33647888
The Archaeal Lsm Protein Binds to Small RNAsQ33688009
An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interactionQ33712153
RNase E autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5' untranslated regionQ33801212
The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) proteinQ33889724
Spatial organization of the flow of genetic information in bacteriaQ33959096
The response regulator SprE (RssB) is required for maintaining poly(A) polymerase I-degradosome association during stationary phaseQ33962944
Positive regulation by small RNAs and the role of HfqQ34006620
Base pairing small RNAs and their roles in global regulatory networksQ34061171
Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulatorQ34107548
Antisense RNAs in bacteria and their genetic elementsQ34121867
Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi.Q34238399
snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactionsQ24317255
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome bindingQ24533360
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.Q24536474
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like proteinQ24536928
Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structureQ24540168
Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destructionQ24546344
Identification of small Hfq-binding RNAs in Listeria monocytogenesQ24548795
Hfq is necessary for regulation by the untranslated RNA DsrAQ24548921
Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coliQ24557422
HITS-CLIP: panoramic views of protein-RNA regulation in living cellsQ24594553
Identification of novel small RNAs using comparative genomics and microarraysQ24601229
Interactions of the RNA-binding protein Hfq with cspA mRNA, encoding the major cold shock proteinQ24629257
Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcriptsQ24633132
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesisQ24633959
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteriaQ24641843
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq geneQ24643457
Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its targetQ24647466
The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulatorQ24653385
The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coliQ24656262
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decayQ24669800
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sitesQ24672099
Spot 42 RNA mediates discoordinate expression of the E. coli galactose operonQ24674172
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptideQ24683800
RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNAQ24684056
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coliQ24684800
Translational control and target recognition by Escherichia coli small RNAs in vivoQ24684847
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB.Q24804862
Structure of the DNA binding domain of E. coli SSB bound to ssDNAQ27626150
Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPsQ27639794
Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 Å resolutionQ27653537
Crystal structure of human spliceosomal U1 snRNP at 5.5 Å resolutionQ27654469
Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding propertiesQ27657545
Linking folding and bindingQ37373866
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional levelQ37444341
The role of Hfq in bacterial pathogensQ37676558
Small RNA-mediated regulation at the level of transcript stabilityQ37706896
The Sm-like RNA chaperone Hfq mediates transcription antitermination at Rho-dependent terminators.Q38254988
The C-terminal domain of Escherichia coli Hfq is required for regulationQ38296490
C-Terminally Truncated Derivatives of Escherichia coli Hfq Are Proficient in RiboregulationQ38340396
Rapid cleavage of RNA by RNase E in the absence of 5' monophosphate stimulationQ38349121
Interaction of Escherichia coli host factor protein with oligoriboadenylatesQ38356573
Site-specific interaction of Qbeta host factor and ribosomal protein S1 with Qbeta and R17 bacteriophage RNAsQ38359700
Moraxella catarrhalis expresses an unusual Hfq proteinQ39023611
Translation-independent localization of mRNA in E. coliQ39778989
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAsQ39784092
Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome bindingQ40443123
RNA chaperone activity of the Sm-like Hfq proteinQ40666181
Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli.Q40724195
Host factor for coliphage Qβ RNA replication: Presence in procaryotes and association with the 30S ribosomal subunit inEscherichia coliQ40792012
RNAs actively cycle on the Sm-like protein Hfq.Q41429696
Small RNA-induced mRNA degradation achieved through both translation block and activated cleavageQ41912798
Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenesQ42014958
Translational autocontrol of the Escherichia coli hfq RNA chaperone geneQ42140013
Oligomerization behavior of the archaeal Sm2-type protein from Archaeoglobus fulgidusQ42144774
Multifactorial Determinants of Protein Expression in Prokaryotic Open Reading FramesQ42399631
The Acinetobacter baylyi Hfq gene encodes a large protein with an unusual C terminusQ42626033
Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathwayQ42714248
Bacterial proteins required for replication of phage Q ribonucleic acid. Pruification and properties of host factor I, a ribonucleic acid-binding proteinQ44199523
Interaction of the RNA chaperone Hfq with mRNAs: direct and indirect roles of Hfq in iron metabolism of Escherichia coliQ44655567
The Brucella abortus host factor I (HF-I) protein contributes to stress resistance during stationary phase and is a major determinant of virulence in miceQ47910975
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome.Q48539149
Despite similar binding to the Hfq protein regulatory RNAs widely differ in their competition performance.Q50109326
Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli.Q54372530
CspC regulates rpoS transcript levels and complements hfq deletions.Q54382552
The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.Q54496668
Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq.Q54522553
Factor Fraction required for the Synthesis of Bacteriophage Qβ-RNAQ59097796
Functional effects of variants of the RNA chaperone HfqQ61758808
What are the molecular ties that maintain genomic loops?Q64938361
The host factor required for RNA phage Qbeta RNA replication in vitro. Intracellular location, quantitation, and purification by polyadenylate-cellulose chromatographyQ67508261
Nucleotide sequence specific interaction of host factor I with bacteriophage Qβ RNAQ69355452
Interaction of Escherichia coli host factor protein with Q.beta. ribonucleic acidQ72628492
Synergism of mutations in bacteriophage Qbeta RNA affecting host factor dependence of Qbeta replicaseQ73329876
Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoidQ74187557
P433issue8
P407language of work or nameEnglishQ1860
P304page(s)578-589
P577publication date2011-08-15
P1433published inNature Reviews MicrobiologyQ1071797
P1476titleHfq and its constellation of RNA
P478volume9

Reverse relations

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Q35983412Gifsy-1 Prophage IsrK with Dual Function as Small and Messenger RNA Modulates Vital Bacterial Machineries
Q24490554Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
Q55112803Global Regulation by CsrA and Its RNA Antagonists.
Q35765795Global analysis of Salmonella alternative sigma factor E on protein translation.
Q39798384Global small RNA chaperone Hfq and regulatory small RNAs are important virulence regulators in Erwinia amylovora
Q35624257Global transcriptome analysis reveals small RNAs affecting Neisseria meningitidis bacteremia.
Q27243322Grad-seq guides the discovery of ProQ as a major small RNA-binding protein
Q37631509Haemophilus ducreyi Hfq contributes to virulence gene regulation as cells enter stationary phase
Q36888586Haemophilus ducreyi Seeks Alternative Carbon Sources and Adapts to Nutrient Stress and Anaerobiosis during Experimental Infection of Human Volunteers
Q38817044HexA is a versatile regulator involved in the control of phenotypic heterogeneity of Photorhabdus luminescens.
Q42582045Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing
Q91935778Hfq Globally Binds and Destabilizes sRNAs and mRNAs in Yersinia pestis
Q40987473Hfq binds directly to the ribosome-binding site of IS10 transposase mRNA to inhibit translation
Q27685299Hfq binds ribonucleotides in three different RNA-binding sites
Q57260318Hfq chaperone brings speed dating to bacterial sRNA
Q36276430Hfq influences multiple transport systems and virulence in the plant pathogen Agrobacterium tumefaciens.
Q47104096Hfq links translation repression to stress-induced mutagenesis in E. coli
Q35439991Hfq plays important roles in virulence and stress adaptation in Cronobacter sakazakii ATCC 29544.
Q36280714Hfq proximity and orientation controls RNA annealing
Q54293188Hfq reduces envelope stress by controlling expression of envelope-localized proteins and protein complexes in enteropathogenic Escherichia coli.
Q41418730Hfq regulates biofilm gut blockage that facilitates flea-borne transmission of Yersinia pestis
Q42146755Hfq restructures RNA-IN and RNA-OUT and facilitates antisense pairing in the Tn10/IS10 system
Q27677477Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA
Q64067281Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation
Q38674091Hfq: a multifaceted RNA chaperone involved in virulence
Q35933178Hfq: the flexible RNA matchmaker
Q36211969Hfqs in Bacillus anthracis: Role of protein sequence variation in the structure and function of proteins in the Hfq family
Q90044685Hierarchy in Hfq Chaperon Occupancy of Small RNA Targets Plays a Major Role in Their Regulation
Q33723134Hierarchy of RNA functional dynamics
Q24489927High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates
Q35974741How bacterial cells keep ribonucleases under control
Q35620619How do base-pairing small RNAs evolve?
Q36901773Identification and characterization of small RNAs in Yersinia pestis
Q37402292Identification of YbeY-Protein Interactions Involved in 16S rRNA Maturation and Stress Regulation in Escherichia coli
Q36337696Identification of bacterial sRNA regulatory targets using ribosome profiling.
Q36164568Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli
Q90426271Identification of protein-protein and ribonucleoprotein complexes containing Hfq
Q46851301Identification of small RNAs abundant in Burkholderia cenocepacia biofilms reveal putative regulators with a potential role in carbon and iron metabolism
Q34740470Identifying and characterizing Hfq-RNA interactions
Q34972692Impact of Hfq on global gene expression and intracellular survival in Brucella melitensis
Q35188712Impact of Hfq on the Bacillus subtilis transcriptome
Q47102732Impact of bacterial sRNAs in stress responses.
Q50262826Improving fold activation of small transcription activating RNAs (STARs) with rational RNA engineering strategies
Q36306550In vivo characterization of an Hfq protein encoded by the Bacillus anthracis virulence plasmid pXO1
Q34837547Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti.
Q40631587Inhibition of Phagocytic Killing of Escherichia coli in Drosophila Hemocytes by RNA Chaperone Hfq.
Q38142683Initiation of mRNA decay in bacteria
Q42368393Insights into transcription termination of Hfq-binding sRNAs of Escherichia coli and characterization of readthrough products
Q38602982Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.
Q47290490Interplay between the catabolite repression control protein Crc, Hfq and RNA in Hfq-dependent translational regulation in Pseudomonas aeruginosa
Q38846031Interplay of regulatory RNAs and mobile genetic elements in enteric pathogens
Q31133192Intrinsic noise of microRNA-regulated genes and the ceRNA hypothesis
Q35978902Intrinsic plasmids influence MicF-mediated translational repression of ompF in Yersinia pestis
Q28583172In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways
Q47723244Kinetics of dCas9 target search in Escherichia coli
Q34510047Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity
Q38098474Licensing and due process in the turnover of bacterial RNA.
Q42220662Light-Triggered RNA Annealing by an RNA Chaperone
Q92264584Loss of RNA Chaperone Hfq Unveils a Toxic Pathway in Pseudomonas aeruginosa
Q37009111Lsm proteins and Hfq: Life at the 3' end
Q27680705Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching
Q47320143Mapping the small RNA interactome in bacteria using RIL-seq
Q61804596Mechanism and physiological significance of autoregulation of the gene
Q36831683Mechanism for accurate, protein-assisted DNA annealing by Deinococcus radiodurans DdrB.
Q64928887Mechanisms for Hfq-Independent Activation of rpoS by DsrA, a Small RNA, in Escherichia coli.
Q37676483Mechanisms of post-transcriptional gene regulation in bacterial biofilms
Q37266080Mechanistic Insights into Cofactor-Dependent Coupling of RNA Folding and mRNA Transcription/Translation by a Cobalamin Riboswitch
Q38969993Mechanistic study of base-pairing small regulatory RNAs in bacteria.
Q28244052MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
Q47651103Model-based design of RNA hybridization networks implemented in living cells.
Q42751615Modelling translation initiation under the influence of sRNA
Q27681865Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition
Q40280690Molecular mechanism of mRNA repression in trans by a ProQ-dependent small RNA.
Q38965426Molecular phenotyping of infection-associated small non-coding RNAs
Q49981371Motility modulation by the small non-coding RNA SroC in Salmonella Typhimurium
Q90001385Multidrug Resistance Regulators MarA, SoxS, Rob, and RamA Repress Flagellar Gene Expression and Motility in Salmonella enterica Serovar Typhimurium
Q59000580Multiple Roles for the sRNA GcvB in the Regulation of Slp Levels in Escherichia coli
Q35931768Multiple factors dictate target selection by Hfq-binding small RNAs
Q28710105Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features
Q34322538Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets
Q63362170Mycobacterium tuberculosis 6C sRNA binds multiple mRNA targets via C-rich loops independent of RNA chaperones.
Q38199289Ménage à trois: post-transcriptional control of the key enzyme for cell envelope synthesis by a base-pairing small RNA, an RNase adaptor protein, and a small RNA mimic
Q45326202NF90-NF45 is a selective RNA chaperone that rearranges viral and cellular riboswitches: biochemical analysis of a virus host factor activity.
Q51236845Natural Products from Photorhabdus and Other Entomopathogenic Bacteria.
Q33556778Negative allosteric regulation of Enterococcus faecalis small alarmone synthetase RelQ by single-stranded RNA.
Q40285241Neisseria meningitidis Uses Sibling Small Regulatory RNAs To Switch from Cataplerotic to Anaplerotic Metabolism
Q36901756New developments in post-transcriptional regulation of operons by small RNAs
Q35548333New insight into the structure and function of Hfq C-terminus
Q90472458New sequencing methodologies reveal interplay between multiple RNA-binding proteins and their RNAs
Q91928891NfiR, a New Regulatory Noncoding RNA (ncRNA), Is Required in Concert with the NfiS ncRNA for Optimal Expression of Nitrogenase Genes in Pseudomonas stutzeri A1501
Q37226186Nitrogen oxyanion-dependent dissociation of a two-component complex that regulates bacterial nitrate assimilation.
Q28727945Non-coding RNA and its potential role in Mycobacterium tuberculosis pathogenesis
Q55065824Non-coding RNAs Potentially Controlling Cell Cycle in the Model Caulobacter crescentus: A Bioinformatic Approach.
Q34271960Non-coding sRNAs regulate virulence in the bacterial pathogen Vibrio cholerae.
Q28263595Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq
Q26700139Novel Insights into Insect-Microbe Interactions-Role of Epigenomics and Small RNAs
Q59359015Novel roles for Sm-class RNAs in the regulation of gene expression
Q42291805Nucleoid and cytoplasmic localization of small RNAs in Escherichia coli.
Q28710346Omics strategies for revealing Yersinia pestis virulence
Q89824505On a stake-out: Mycobacterial small RNA identification and regulation
Q37373617OprD Repression upon Metal Treatment Requires the RNA Chaperone Hfq in Pseudomonas aeruginosa
Q93366073Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium
Q38141160Pathogenesis of adherent-invasive Escherichia coli.
Q52714677Pervasive Targeting of Nascent Transcripts by Hfq.
Q43576806Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.
Q34538307Photorhabdus-nematode symbiosis is dependent on hfq-mediated regulation of secondary metabolites
Q24605734Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli
Q36095406Plasmid pPCP1-derived sRNA HmsA promotes biofilm formation of Yersinia pestis
Q41674595Pleiotropic Regulation of Virulence Genes in Streptococcus mutans by the Conserved Small Protein SprV.
Q34056874Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile
Q58702556Poly(A) polymerase is required for RyhB sRNA stability and function in
Q92075560Polynucleotide phosphorylase promotes the stability and function of Hfq-binding sRNAs by degrading target mRNA-derived fragments
Q34372359Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq.
Q51393409Positive regulatory dynamics by a small noncoding RNA: speeding up responses under temperature stress.
Q27680589Post-Transcriptional Regulator Hfq Binds Catalase HPII: Crystal Structure of the Complex
Q57344163Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus
Q38187662Post-transcriptional regulation of gene expression in bacterial pathogens by toxin-antitoxin systems
Q34436751Post-transcriptional regulation of the virulence-associated enzyme AlgC by the σ(22) -dependent small RNA ErsA of Pseudomonas aeruginosa.
Q38016604Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems.
Q38201636Posttranscriptional regulation of oral bacterial adaptive responses
Q47096824Potential and use of bacterial small RNAs to combat drug resistance: a systematic review.
Q24490074Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens
Q34526027Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA.
Q33577327Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains
Q89528016Proteomic responses of spores of Bacillus subtilis to thermosonication involve large-scale alterations in metabolic pathways
Q28714377Quantitative proteomic analysis of the Hfq-regulon in Sinorhizobium meliloti 2011
Q39367031Quick change: post-transcriptional regulation in Pseudomonas
Q37324474Quorum sensing signal-response systems in Gram-negative bacteria
Q35683145Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets.
Q41763069RETRACTED: MtvR is a global small noncoding regulatory RNA in Burkholderia cenocepacia
Q33742173RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins
Q28081604RNA Degradation in Staphylococcus aureus: Diversity of Ribonucleases and Their Impact
Q38211777RNA binding by Hfq and ring-forming (L)Sm proteins: a trade-off between optimal sequence readout and RNA backbone conformation
Q30643654RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA.
Q38533831RNA degradosomes in bacteria and chloroplasts: classification, distribution and evolution of RNase E homologs
Q35799715RNA regulators of host immunity and pathogen adaptive responses in the oral cavity
Q39436206RNA search engines empower the bacterial intranet
Q29114114RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes
Q47956799RNA silencing in plant symbiotic bacteria: Insights from a protein-centric view.
Q36833029RNA type III secretion signals that require Hfq
Q38839256RNA-based mechanisms of virulence control in Enterobacteriaceae
Q39135511RNA-based recognition and targeting: sowing the seeds of specificity
Q89566837RNA-binding proteins in bacteria
Q26858937RNA-binding proteins involved in post-transcriptional regulation in bacteria
Q37122347RNA-mediated regulation in pathogenic bacteria
Q35839664RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium
Q36399874RNase E finds some sRNAs stimulating
Q38067568RNase E: at the interface of bacterial RNA processing and decay
Q30408238Rapid colorimetric assays to qualitatively distinguish RNA and DNA in biomolecular samples
Q49924178Reciprocal Regulation of OmpR and Hfq and Their Regulatory Actions on the Vi Polysaccharide Capsular Antigen in Salmonella enterica Serovar Typhi
Q35111238Recognition of the small regulatory RNA RydC by the bacterial Hfq protein
Q35377223Reduced heme levels underlie the exponential growth defect of the Shewanella oneidensis hfq mutant
Q26776000Regulated Control of the Assembly and Diversity of LPS by Noncoding sRNAs
Q50028612Regulating the regulator: MicF RNA controls expression of the global regulator Lrp.
Q39532748Regulation Systems of Bacteria such as Escherichia coli in Response to Nutrient Limitation and Environmental Stresses
Q27009044Regulation by small RNAs in bacteria: expanding frontiers
Q21144870Regulation of Hfq by the RNA CrcZ in Pseudomonas aeruginosa carbon catabolite repression
Q35182348Regulation of Hfq mRNA and protein levels in Escherichia coli and Pseudomonas aeruginosa by the Burkholderia cenocepacia MtvR sRNA
Q40047509Regulation of Neisseria meningitidis cytochrome bc1 components by NrrF, a Fur-controlled small noncoding RNA.
Q41674655Regulation of Polyhydroxybutyrate Accumulation in Sinorhizobium meliloti by the Trans-Encoded Small RNA MmgR.
Q64981026Regulation of Transcription Termination of Small RNAs and by Small RNAs: Molecular Mechanisms and Biological Functions.
Q38103937Regulation of pathogenicity by noncoding RNAs in bacteria
Q38435296Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression.
Q90249916Regulatory non-coding sRNAs in bacterial metabolic pathway engineering
Q35849677RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq.
Q59126981Revised role for Hfq bacterial regulator on DNA topology
Q90270007Riboregulation in Nitrogen-Fixing Endosymbiotic Bacteria
Q26864663Riboregulation in plant-associated α-proteobacteria
Q26769016Riboregulation of bacterial and archaeal transposition
Q54278546Riboregulation of the bacterial actin-homolog MreB by DsrA small noncoding RNA.
Q38197832Riboregulators and the role of Hfq in photosynthetic bacteria
Q92256660Role of Hfq in Genome Evolution: Instability of G-Quadruplex Sequences in E. coli
Q39103598Role of Non-coding Regulatory RNA in the Virulence of Human Pathogenic Vibrios.
Q26766030Role of Small Noncoding RNAs in Bacterial Metabolism
Q41432718Role of the terminator hairpin in the biogenesis of functional Hfq-binding sRNAs
Q39321244Roles of Regulatory RNAs for Antibiotic Resistance in Bacteria and Their Potential Value as Novel Drug Targets
Q40624537RpoS-dependent sRNA RgsA regulates Fis and AcpP in Pseudomonas aeruginosa.
Q42223779Scaffold-fused riboregulators for enhanced gene activation in Synechocystis sp. PCC 6803
Q40397577Several Hfq-dependent alterations in physiology of Yersinia enterocolitica O:3 are mediated by derepression of the transcriptional regulator RovM.
Q34581112Shewanella oneidensis Hfq promotes exponential phase growth, stationary phase culture density, and cell survival
Q33402959Shiga toxin in enterohemorrhagic E.coli: regulation and novel anti-virulence strategies
Q47626617Silent but deadly: IS200 promotes pathogenicity in Salmonella Typhimurium
Q33554177Sinorhizobium meliloti YbeY is an endoribonuclease with unprecedented catalytic features, acting as silencing enzyme in riboregulation
Q92071736Small RNA ArcZ Regulates Oxidative Stress Response Genes and Regulons in Erwinia amylovora
Q28727846Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition
Q38235406Small RNA functions in carbon metabolism and virulence of enteric pathogens
Q28284168Small RNA modules confer different stabilities and interact differently with multiple targets
Q55425615Small RNA profiling in Mycobacterium tuberculosis identifies MrsI as necessary for an anticipatory iron sparing response.
Q21131371Small RNA sX13: a multifaceted regulator of virulence in the plant pathogen Xanthomonas
Q36008348Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella
Q28288849Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis
Q90060039Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM
Q27026497Small RNAs in the Vibrionaceae: an ocean still to be explored
Q95355807Small RNAs of Borrelia burgdorferi: Characterizing Functional Regulators in a Sea of sRNAs
Q26852464Small RNAs, 5' UTR elements and RNA-binding proteins in intracellular bacteria: impact on metabolism and virulence
Q38084831Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella
Q38199304Small non-coding RNAs in plant-pathogenic Xanthomonas spp.
Q38191748Small regulatory RNAs from low-GC Gram-positive bacteria
Q34122750Small regulatory RNAs in Archaea
Q39014913Small regulatory RNAs in Streptococcus pneumoniae: discovery and biological functions
Q42330324Spot 42 sRNA regulates arabinose-inducible araBAD promoter activity by repressing synthesis of the high-affinity low-capacity arabinose transporter
Q89599909Staphylococcus aureus pigmentation is not controlled by Hfq
Q27675434Structural and Biochemical Studies on ATP Binding and Hydrolysis by the Escherichia coli RNA Chaperone Hfq
Q38656166Structural and dynamic properties of the C-terminal region of the Escherichia coli RNA chaperone Hfq: integrative experimental and computational studies
Q114371092Structural basis of rotavirus RNA chaperone displacement and RNA annealing
Q42324804Structural flexibility of RNA as molecular basis for Hfq chaperone function
Q35131127Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq.
Q27672887Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract
Q34661444Structural model of an mRNA in complex with the bacterial chaperone Hfq.
Q38093756Structure and RNA-binding properties of the bacterial LSm protein Hfq.
Q41850298Structure of an Escherichia coli Hfq:RNA complex at 0.97 Å resolution
Q41430016Study of E. coli Hfq's RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents
Q40028342Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA.
Q57755950Supramolecular membrane-associated assemblies of RNA metabolic proteins in Escherichia coli
Q90068768Surface association sensitizes Pseudomonas aeruginosa to quorum sensing
Q90470293Switching fatty acid metabolism by an RNA-controlled feed forward loop
Q101166550Symbiosis, virulence and natural-product biosynthesis in entomopathogenic bacteria are regulated by a small RNA
Q35569225Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics
Q28081126Target activation by regulatory RNAs in bacteria
Q28286931Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA
Q36240637Temperature-dependent sRNA transcriptome of the Lyme disease spirochete
Q34337618The AfaR small RNA controls expression of the AfaD-VIII invasin in pathogenic Escherichia coli strains
Q47157269The Anaerobically Induced sRNA PaiI Affects Denitrification in Pseudomonas aeruginosa PA14.
Q91807373The Bacterial Amyloid-Like Hfq Promotes In Vitro DNA Alignment
Q31145113The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum
Q41934938The Cpx envelope stress response regulates and is regulated by small noncoding RNAs.
Q58031118The Crc and Hfq proteins ofPseudomonas putidacooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs
Q41510446The Crc protein participates in down-regulation of the Lon gene to promote rhamnolipid production and rhl quorum sensing in Pseudomonas aeruginosa.
Q36835470The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli.
Q47303593The DNABII family of proteins is comprised of the only nucleoid associated proteins required for nontypeable Haemophilus influenzae biofilm structure
Q26741702The Escherichia Coli Hfq Protein: An Unattended DNA-Transactions Regulator
Q36109037The Genetic Analysis of an Acinetobacter johnsonii Clinical Strain Evidenced the Presence of Horizontal Genetic Transfer.
Q41348540The Heptameric SmAP1 and SmAP2 Proteins of the Crenarchaeon Sulfolobus Solfataricus Bind to Common and Distinct RNA Targets
Q88683782The Hfq chaperone helps the ribosome mature
Q38737223The Hfq regulon of Neisseria meningitidis.
Q36114219The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium.
Q46348382The Irr and RirA Proteins Participate in a Complex Regulatory Circuit and Act in Concert To Modulate Bacterioferritin Expression in Ensifer meliloti 1021.
Q60922200The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium
Q55263726The Most Important Virulence Markers of Yersinia enterocolitica and Their Role during Infection.
Q27678381The Pseudomonas aeruginosa Catabolite Repression Control Protein Crc Is Devoid of RNA Binding Activity
Q39153160The Pseudomonas aeruginosa CrcZ RNA interferes with Hfq-mediated riboregulation
Q92876527The RGG/RG motif of AUF1 isoform p45 is a key modulator of the protein's RNA chaperone and RNA annealing activities
Q37076396The RNA Chaperone Hfq Is Essential for Virulence and Modulates the Expression of Four Adhesins in Yersinia enterocolitica
Q36148477The RNA Chaperone Hfq Is Involved in Colony Morphology, Nutrient Utilization and Oxidative and Envelope Stress Response in Vibrio alginolyticus.
Q35866021The RNA Helicase DeaD Stimulates ExsA Translation To Promote Expression of the Pseudomonas aeruginosa Type III Secretion System.
Q47907885The RNA chaperone Hfq enables the environmental stress tolerance super-phenotype of Pseudomonas putida
Q28538741The RNA chaperone Hfq impacts growth, metabolism and production of virulence factors in Yersinia enterocolitica
Q37264875The RNA chaperone Hfq is required for virulence of Bordetella pertussis
Q39992446The RNA-Binding Chaperone Hfq Is an Important Global Regulator of Gene Expression in Pasteurella multocida and Plays a Crucial Role in Production of a Number of Virulence Factors, Including Hyaluronic Acid Capsule.
Q54205177The RNA-binding protein Hfq is important for ribosome biogenesis and affects translation fidelity.
Q64019873The RNase YbeY Is Vital for Ribosome Maturation, Stress Resistance, and Virulence of the Natural Genetic Engineer Agrobacterium tumefaciens
Q33705048The Role of Ribonucleases and sRNAs in the Virulence of Foodborne Pathogens
Q41510845The SmAP1/2 proteins of the crenarchaeon Sulfolobus solfataricus interact with the exosome and stimulate A-rich tailing of transcripts
Q41628128The SmAP2 RNA binding motif in the 3'UTR affects mRNA stability in the crenarchaeum Sulfolobus solfataricus
Q39326888The Small RNA GcvB Promotes Mutagenic Break Repair by Opposing the Membrane Stress Response
Q28292941The Vibrio parahaemolyticus small RNA RyhB promotes production of the siderophore vibrioferrin by stabilizing the polycistronic mRNA
Q38852902The analysis of the antibiotic resistome offers new opportunities for therapeutic intervention
Q35882335The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair
Q37995707The bacterial protein Hfq: much more than a mere RNA-binding factor
Q35568551The brace for a growing scaffold: Mss116 protein promotes RNA folding by stabilizing an early assembly intermediate
Q42095834The broad-spectrum antibiotic, zeamine, kills the nematode worm Caenorhabditis elegans.
Q33661903The centrality of RNA for engineering gene expression
Q28655054The coding and noncoding architecture of the Caulobacter crescentus genome
Q54340513The csgD mRNA as a hub for signal integration via multiple small RNAs.
Q59127032The development of a new parameter for tracking post-transcriptional regulation allows the detailed map of the Pseudomonas aeruginosa Crc regulon
Q43149694The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tail
Q35539843The global regulatory architecture of transcription during the Caulobacter cell cycle
Q31164442The highly conserved bacterial RNase YbeY is essential in Vibrio cholerae, playing a critical role in virulence, stress regulation, and RNA processing
Q39240966The impact of insertion sequences on bacterial genome plasticity and adaptability.
Q26852007The interplay of Hfq, poly(A) polymerase I and exoribonucleases at the 3' ends of RNAs resulting from Rho-independent termination: A tentative model
Q34115395The iron-sensing aconitase B binds its own mRNA to prevent sRNA-induced mRNA cleavage
Q36280635The low-resolution solution structure of Vibrio cholerae Hfq in complex with Qrr1 sRNA
Q96135488The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition
Q26851952The noncoding RNA revolution-trashing old rules to forge new ones
Q56888116The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978
Q92902297The protein regulator ArgR and the sRNA derived from the 3'-UTR region of its gene, ArgX, both regulate the arginine deiminase pathway in Lactococcus lactis
Q38161763The ribonucleoprotein Csr network
Q41606921The role of Hfq in regulation of lipA expression in Pseudomonas protegens Pf-5.
Q42428502The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E.
Q60045811The small RNA RssR regulates myo-inositol degradation by Salmonella enterica
Q40987468The small RNA Spot 42 regulates the expression of the type III secretion system 1 (T3SS1) chaperone protein VP1682 in Vibrio parahaemolyticus
Q39519699The small RNA SraG participates in PNPase homeostasis
Q28972220The social fabric of the RNA degradosome
Q28277062The target spectrum of SdsR small RNA in Salmonella
Q90007039The unusual glycine-rich C terminus of the Acinetobacter baumannii RNA chaperone Hfq plays an important role in bacterial physiology
Q36147132Thermal control of virulence factors in bacteria: a hot topic
Q42600827Tn5 transposition in Escherichia coli is repressed by Hfq and activated by over-expression of the small non-coding RNA SgrS.
Q64897602Toxin⁻Antitoxin Systems in Bacillus subtilis.
Q28546723Tracking the Elusive Function of Bacillus subtilis Hfq
Q28647613Transcriptional Profiling of Hydrogen Production Metabolism of Rhodobacter capsulatus under Temperature Stress by Microarray Analysis
Q27016195Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori
Q34517200Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism
Q36391979Transcriptome profiling of Zymomonas mobilis under ethanol stress.
Q34501223Transcriptome-Wide Identification of Hfq-Associated RNAs in Brucella suis by Deep Sequencing
Q34468976Transcriptomic profiling of Yersinia pseudotuberculosis reveals reprogramming of the Crp regulon by temperature and uncovers Crp as a master regulator of small RNAs
Q28710534Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus
Q21563354Translation enhancing ACA motifs and their silencing by a bacterial small regulatory RNA
Q64104376TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs
Q37051423Twins, quadruplexes, and more: functional aspects of native and engineered RNA self-assembly in vivo
Q39083061Two regulatory RNA elements affect TisB-dependent depolarization and persister formation.
Q42665602Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region.
Q57456017Two virulent sRNAs identified by genomic sequencing target the type III secretion system in rice bacterial blight pathogen
Q35764298Two-level inhibition of galK expression by Spot 42: Degradation of mRNA mK2 and enhanced transcription termination before the galK gene
Q64945312Type I Toxin-Antitoxin Systems in Clostridia.
Q37548346Ultra deep sequencing of Listeria monocytogenes sRNA transcriptome revealed new antisense RNAs
Q37522931Unexpected properties of sRNA promoters allow feedback control via regulation of a two-component system
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